Wall clock time and date at job start Tue Mar 31 2020 11:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.47051 * 2 1 4 4 C 1.37099 * 119.99856 * 271.20377 * 3 2 1 5 5 H 1.07997 * 119.99926 * 184.17502 * 4 3 2 6 6 C 1.38950 * 120.00025 * 4.18598 * 4 3 2 7 7 N 1.31413 * 120.00149 * 31.34323 * 6 4 3 8 8 Si 1.86800 * 119.99618 * 211.35358 * 6 4 3 9 9 H 1.48495 * 109.47497 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47138 * 119.99917 * 8 6 4 11 11 H 1.48502 * 109.46723 * 239.99480 * 8 6 4 12 12 C 1.34777 * 119.99704 * 91.21485 * 3 2 1 13 13 O 1.21293 * 119.99650 * 185.60815 * 12 3 2 14 14 C 1.50697 * 120.00237 * 5.60057 * 12 3 2 15 15 H 1.08996 * 109.47139 * 322.62938 * 14 12 3 16 16 O 1.42904 * 109.46969 * 202.62624 * 14 12 3 17 17 C 1.50702 * 109.46899 * 82.63093 * 14 12 3 18 18 C 1.38224 * 119.98732 * 72.15300 * 17 14 12 19 19 C 1.38353 * 120.01402 * 179.72852 * 18 17 14 20 20 Cl 1.73603 * 120.00999 * 180.27415 * 19 18 17 21 21 C 1.38334 * 119.98485 * 0.52390 * 19 18 17 22 22 C 1.38331 * 119.97318 * 359.74778 * 21 19 18 23 23 Cl 1.73602 * 120.00696 * 180.02562 * 22 21 19 24 24 C 1.38216 * 119.98483 * 252.42796 * 17 14 12 25 25 H 1.08995 * 109.46831 * 59.99903 * 1 2 3 26 26 H 1.08997 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46906 * 300.00086 * 1 2 3 28 28 H 1.09005 * 109.47272 * 239.99822 * 2 1 3 29 29 H 1.09000 * 109.46983 * 119.99645 * 2 1 3 30 30 H 0.97003 * 119.99747 * 180.02562 * 7 6 4 31 31 H 0.96702 * 114.00336 * 300.00514 * 16 14 12 32 32 H 1.08001 * 119.99189 * 0.02562 * 18 17 14 33 33 H 1.08004 * 120.01435 * 179.77304 * 21 19 18 34 34 H 1.07994 * 119.99770 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2233 2.0358 -1.1871 5 1 2.6468 3.0293 -1.1897 6 6 1.8861 1.4211 -2.3867 7 7 0.8790 0.5781 -2.4327 8 14 2.8645 1.7928 -3.9339 9 1 3.9391 2.7677 -3.6179 10 1 3.4695 0.5387 -4.4502 11 1 1.9623 2.3677 -4.9639 12 6 2.2663 2.0083 1.1670 13 8 2.5724 3.1820 1.1717 14 6 2.1630 1.2513 2.4659 15 1 1.3302 0.5502 2.4126 16 8 1.9434 2.1713 3.5372 17 6 3.4429 0.4937 2.7089 18 6 4.5924 1.1749 3.0630 19 6 5.7663 0.4793 3.2917 20 17 7.2081 1.3342 3.7434 21 6 5.7922 -0.8970 3.1553 22 6 4.6429 -1.5776 2.7954 23 17 4.6742 -3.3049 2.6246 24 6 3.4682 -0.8814 2.5720 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.6438 0.1487 -3.2701 31 1 2.6469 2.8263 3.6437 32 1 4.5729 2.2498 3.1659 33 1 6.7092 -1.4401 3.3301 34 1 2.5709 -1.4127 2.2914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271029171.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:05 Heat of formation + Delta-G solvation = -73.158940 kcal Electronic energy + Delta-G solvation = -22510.879373 eV Core-core repulsion = 18881.564275 eV Total energy + Delta-G solvation = -3629.315098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53883 -39.99719 -37.98030 -37.81656 -37.26702 -36.62112 -34.00291 -32.67103 -31.80320 -31.24328 -28.68990 -26.37514 -24.25641 -23.80467 -23.25559 -21.13166 -19.16195 -18.81733 -18.46558 -17.41383 -17.08068 -16.86929 -16.22479 -16.09545 -15.52880 -15.48681 -15.10442 -14.81976 -14.67008 -14.55012 -13.86634 -13.46592 -13.40040 -13.25122 -13.09347 -12.88347 -12.77012 -12.57621 -12.38809 -12.20365 -12.15340 -12.07348 -12.01083 -11.78024 -11.55357 -10.85211 -10.45007 -9.86401 -9.82513 -9.77130 -8.36875 -5.83955 -0.15699 -0.15117 0.69793 1.16183 1.30558 1.43182 1.54660 1.85636 2.20200 2.28458 2.87343 2.97484 3.35003 3.46200 3.77413 3.82476 3.83704 3.92598 4.08199 4.30231 4.37583 4.42852 4.76833 4.85589 4.86908 4.93477 5.10745 5.15696 5.32627 5.38206 5.43531 5.98687 6.02893 6.44089 6.52866 7.14577 7.43068 7.96642 8.55944 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.005038 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.985876 B = 5556.885315 C = 5947.784621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.118 3.882 3 N -0.434 5.434 4 C -0.357 4.357 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.850 5.850 8 Si 0.968 3.032 9 H -0.280 1.280 10 H -0.265 1.265 11 H -0.275 1.275 12 C 0.399 3.601 13 O -0.631 6.631 14 C 0.153 3.847 15 H 0.134 0.866 16 O -0.541 6.541 17 C -0.089 4.089 18 C -0.099 4.099 19 C -0.024 4.024 20 Cl -0.049 7.049 21 C -0.097 4.097 22 C -0.022 4.022 23 Cl -0.043 7.043 24 C -0.095 4.095 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.276 0.724 31 H 0.387 0.613 32 H 0.136 0.864 33 H 0.167 0.833 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.223 -9.538 9.819 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.004 4.004 3 N -0.151 5.151 4 C -0.484 4.484 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.487 5.487 8 Si 0.792 3.208 9 H -0.205 1.205 10 H -0.189 1.189 11 H -0.201 1.201 12 C 0.188 3.812 13 O -0.520 6.520 14 C 0.090 3.910 15 H 0.152 0.848 16 O -0.347 6.347 17 C -0.091 4.091 18 C -0.118 4.118 19 C -0.051 4.051 20 Cl -0.020 7.020 21 C -0.116 4.116 22 C -0.049 4.049 23 Cl -0.014 7.014 24 C -0.114 4.114 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.237 0.763 32 H 0.154 0.846 33 H 0.184 0.816 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.833 -9.555 9.758 15.271 hybrid contribution 0.803 0.775 -1.034 1.521 sum 7.636 -8.781 8.724 14.543 Atomic orbital electron populations 1.22251 0.95319 1.01715 1.01997 1.21628 0.95699 0.81947 1.01176 1.44069 1.54177 1.12352 1.04526 1.19538 1.42483 1.02818 0.83583 0.90962 1.25759 0.95402 0.96671 1.00947 1.70210 1.20822 1.29130 1.28510 0.85292 0.78900 0.78555 0.78042 1.20509 1.18936 1.20100 1.21144 0.85859 0.87914 0.86234 1.90477 1.56542 1.18027 1.86997 1.20527 0.95780 0.89968 0.84693 0.84842 1.86516 1.51471 1.46752 1.49978 1.20118 0.95230 0.93981 0.99736 1.20996 0.91029 1.01127 0.98638 1.20657 0.88616 0.92370 1.03441 1.98381 1.35924 1.77001 1.90739 1.21116 0.99049 0.91887 0.99543 1.20668 0.94590 0.86151 1.03505 1.98388 1.98718 1.08246 1.96051 1.21197 0.98729 0.92701 0.98760 0.90043 0.91330 0.95464 0.90910 0.91010 0.91308 0.76310 0.84621 0.81562 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 9.58 71.98 0.69 -5.35 16 2 C 0.12 4.81 5.00 86.38 0.43 5.24 16 3 N -0.43 -21.23 2.62 -635.51 -1.67 -22.90 16 4 C -0.36 -19.56 9.40 84.04 0.79 -18.77 16 5 H 0.07 4.37 7.36 -2.91 -0.02 4.35 16 6 C 0.02 0.87 4.78 84.93 0.41 1.28 16 7 N -0.85 -40.86 8.36 21.66 0.18 -40.68 16 8 Si 0.97 40.40 29.65 68.60 2.03 42.43 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 11 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 12 C 0.40 18.91 6.73 87.66 0.59 19.50 16 13 O -0.63 -34.75 15.95 14.91 0.24 -34.51 16 14 C 0.15 5.50 2.89 29.10 0.08 5.58 16 15 H 0.13 4.38 6.09 -2.39 -0.01 4.36 16 16 O -0.54 -19.06 13.07 -131.00 -1.71 -20.77 16 17 C -0.09 -2.74 4.84 -19.87 -0.10 -2.83 16 18 C -0.10 -2.93 8.97 22.29 0.20 -2.73 16 19 C -0.02 -0.61 6.32 22.32 0.14 -0.47 16 20 Cl -0.05 -1.14 28.96 -2.72 -0.08 -1.22 16 21 C -0.10 -2.19 9.62 22.31 0.21 -1.97 16 22 C -0.02 -0.52 6.32 22.32 0.14 -0.38 16 23 Cl -0.04 -0.88 28.96 -2.72 -0.08 -0.96 16 24 C -0.10 -2.50 8.38 22.29 0.19 -2.31 16 25 H 0.08 3.77 5.67 -2.39 -0.01 3.75 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.03 1.01 7.74 -2.39 -0.02 0.99 16 28 H 0.07 3.20 6.29 -2.38 -0.02 3.19 16 29 H 0.07 2.39 3.40 -2.39 -0.01 2.38 16 30 H 0.28 12.34 8.31 -92.71 -0.77 11.57 16 31 H 0.39 12.31 7.36 -74.06 -0.55 11.77 16 32 H 0.14 4.09 7.13 -2.91 -0.02 4.07 16 33 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.16 3.61 6.56 -2.91 -0.02 3.60 16 Total: -1.00 -61.74 313.83 3.33 -58.41 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.63 Total: 23.41 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 3.78 Total: -3.22 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -1.49 Total: -63.58 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.47 Total: -55.28 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.16 Total: -2.18 kcal Total: -61.74 3.33 -58.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029171.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.748 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds