Wall clock time and date at job start Tue Mar 31 2020 11:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47239 * 2 1 4 4 C 1.37099 * 119.99957 * 85.92218 * 3 2 1 5 5 H 1.08001 * 119.99706 * 173.69975 * 4 3 2 6 6 C 1.38953 * 120.00117 * 353.69926 * 4 3 2 7 7 N 1.31405 * 119.99688 * 346.26209 * 6 4 3 8 8 Si 1.86804 * 119.99782 * 166.26728 * 6 4 3 9 9 H 1.48491 * 109.47205 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46928 * 119.99912 * 8 6 4 11 11 H 1.48497 * 109.46608 * 239.99613 * 8 6 4 12 12 C 1.34773 * 119.99916 * 265.92018 * 3 2 1 13 13 O 1.21299 * 120.00022 * 184.61470 * 12 3 2 14 14 C 1.50701 * 120.00052 * 4.61441 * 12 3 2 15 15 H 1.08997 * 109.47191 * 35.86058 * 14 12 3 16 16 O 1.42905 * 109.47233 * 155.86222 * 14 12 3 17 17 C 1.50705 * 109.46910 * 275.85746 * 14 12 3 18 18 C 1.38216 * 119.99303 * 287.68379 * 17 14 12 19 19 C 1.38359 * 120.01354 * 179.72407 * 18 17 14 20 20 Cl 1.73601 * 120.00432 * 180.27100 * 19 18 17 21 21 C 1.38324 * 119.98622 * 0.57338 * 19 18 17 22 22 C 1.38331 * 119.97748 * 359.69921 * 21 19 18 23 23 Cl 1.73591 * 120.01163 * 180.02562 * 22 21 19 24 24 C 1.38226 * 119.97981 * 107.95483 * 17 14 12 25 25 H 1.09005 * 109.47033 * 300.00306 * 1 2 3 26 26 H 1.08998 * 109.47374 * 59.99553 * 1 2 3 27 27 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46747 * 120.00096 * 2 1 3 29 29 H 1.09005 * 109.47033 * 239.99693 * 2 1 3 30 30 H 0.96998 * 119.99906 * 179.97438 * 7 6 4 31 31 H 0.96696 * 113.99660 * 59.99701 * 16 14 12 32 32 H 1.08007 * 119.98797 * 0.02562 * 18 17 14 33 33 H 1.08003 * 120.01263 * 179.72446 * 21 19 18 34 34 H 1.07997 * 119.99826 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1672 2.0556 1.1843 5 1 2.6219 3.0352 1.1944 6 6 1.7331 1.4789 2.3716 7 7 0.9467 0.4265 2.3418 8 14 2.2673 2.1997 4.0101 9 1 3.1455 3.3731 3.7719 10 1 1.0694 2.6251 4.7779 11 1 3.0119 1.1734 4.7830 12 6 2.3212 1.9888 -1.1642 13 8 2.8042 3.1015 -1.1599 14 6 2.0599 1.2859 -2.4714 15 1 1.1455 0.6982 -2.3914 16 8 1.9144 2.2542 -3.5122 17 6 3.2166 0.3744 -2.7915 18 6 4.4272 0.9085 -3.1910 19 6 5.4911 0.0723 -3.4795 20 17 7.0136 0.7437 -3.9744 21 6 5.3395 -1.2990 -3.3795 22 6 4.1260 -1.8333 -2.9851 23 17 3.9350 -3.5540 -2.8587 24 6 3.0646 -0.9958 -2.6909 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 0.6439 0.0237 3.1706 31 1 2.6922 2.8142 -3.6399 32 1 4.5440 1.9791 -3.2732 33 1 6.1684 -1.9523 -3.6089 34 1 2.1173 -1.4128 -2.3825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271029173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:09 Heat of formation + Delta-G solvation = -68.806594 kcal Electronic energy + Delta-G solvation = -22528.276407 eV Core-core repulsion = 18899.150040 eV Total energy + Delta-G solvation = -3629.126366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56961 -39.99859 -38.00129 -37.81626 -37.28895 -36.64472 -33.93027 -32.65087 -31.81798 -31.21419 -28.66136 -26.39431 -24.23349 -23.79475 -23.20891 -21.17531 -19.15891 -18.86430 -18.48054 -17.40634 -17.08189 -16.87462 -16.18378 -16.02743 -15.51694 -15.48973 -15.12312 -14.80049 -14.69797 -14.57014 -13.66564 -13.48638 -13.39872 -13.22521 -13.06715 -12.85759 -12.76585 -12.57585 -12.38306 -12.21229 -12.14803 -12.01911 -11.98122 -11.79461 -11.64029 -10.81108 -10.46720 -9.86236 -9.83662 -9.69070 -8.23058 -5.89255 -0.16114 -0.15375 0.69908 1.16335 1.33111 1.43074 1.54745 1.85641 2.20293 2.28107 2.90434 3.03457 3.35070 3.46485 3.79687 3.82241 3.84167 3.92837 4.08772 4.30493 4.41091 4.45749 4.83058 4.89915 4.93708 4.95872 5.10868 5.19510 5.32330 5.40531 5.55555 6.00535 6.06575 6.44446 6.51934 7.14411 7.44249 7.94511 8.63026 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.004906 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.590649 B = 5705.790874 C = 6323.372457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.115 3.885 3 N -0.438 5.438 4 C -0.340 4.340 5 H 0.073 0.927 6 C 0.002 3.998 7 N -0.867 5.867 8 Si 0.984 3.016 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.268 1.268 12 C 0.402 3.598 13 O -0.631 6.631 14 C 0.153 3.847 15 H 0.133 0.867 16 O -0.541 6.541 17 C -0.090 4.090 18 C -0.099 4.099 19 C -0.024 4.024 20 Cl -0.049 7.049 21 C -0.097 4.097 22 C -0.022 4.022 23 Cl -0.043 7.043 24 C -0.095 4.095 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.273 0.727 31 H 0.387 0.613 32 H 0.136 0.864 33 H 0.167 0.833 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -9.382 -10.074 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 N -0.156 5.156 4 C -0.468 4.468 5 H 0.091 0.909 6 C -0.200 4.200 7 N -0.507 5.507 8 Si 0.808 3.192 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.193 1.193 12 C 0.191 3.809 13 O -0.520 6.520 14 C 0.091 3.909 15 H 0.150 0.850 16 O -0.347 6.347 17 C -0.092 4.092 18 C -0.118 4.118 19 C -0.051 4.051 20 Cl -0.020 7.020 21 C -0.116 4.116 22 C -0.049 4.049 23 Cl -0.014 7.014 24 C -0.114 4.114 25 H 0.093 0.907 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.237 0.763 32 H 0.154 0.846 33 H 0.185 0.815 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.202 -9.370 -9.991 14.651 hybrid contribution 0.741 0.777 1.018 1.479 sum 5.943 -8.592 -8.973 13.772 Atomic orbital electron populations 1.22185 0.95444 1.01364 1.01070 1.21865 0.95707 0.81657 1.01442 1.44079 1.54209 1.12619 1.04682 1.19712 1.39576 1.02839 0.84645 0.90872 1.25869 0.95138 0.97219 1.01793 1.70258 1.29804 1.22208 1.28400 0.85012 0.78246 0.78148 0.77750 1.20588 1.19832 1.19338 1.21189 0.85812 0.87444 0.86458 1.90478 1.51489 1.22669 1.87328 1.20542 0.97467 0.88019 0.84915 0.84952 1.86520 1.45039 1.50278 1.52850 1.20138 0.95262 0.94215 0.99597 1.20993 0.91403 1.00954 0.98423 1.20655 0.88252 0.93026 1.03149 1.98380 1.28672 1.85425 1.89533 1.21117 0.97604 0.93269 0.99584 1.20666 0.94793 0.86110 1.03332 1.98388 1.97586 1.08914 1.96477 1.21202 1.00016 0.91505 0.98668 0.90725 0.95744 0.91653 0.89502 0.91626 0.91644 0.76286 0.84575 0.81529 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 9.40 71.98 0.68 -4.92 16 2 C 0.12 4.80 4.98 86.38 0.43 5.23 16 3 N -0.44 -21.65 2.63 -635.53 -1.67 -23.32 16 4 C -0.34 -18.63 9.52 84.04 0.80 -17.83 16 5 H 0.07 4.39 7.21 -2.91 -0.02 4.37 16 6 C 0.00 0.10 5.22 84.93 0.44 0.54 16 7 N -0.87 -41.52 7.37 21.66 0.16 -41.36 16 8 Si 0.98 40.98 29.58 68.60 2.03 43.01 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 C 0.40 19.12 6.73 87.66 0.59 19.71 16 13 O -0.63 -34.53 15.96 14.73 0.24 -34.30 16 14 C 0.15 5.56 2.88 29.10 0.08 5.65 16 15 H 0.13 4.46 5.95 -2.39 -0.01 4.45 16 16 O -0.54 -19.14 13.08 -131.16 -1.72 -20.85 16 17 C -0.09 -2.80 4.71 -19.87 -0.09 -2.89 16 18 C -0.10 -2.92 8.97 22.29 0.20 -2.72 16 19 C -0.02 -0.61 6.32 22.32 0.14 -0.47 16 20 Cl -0.05 -1.13 28.96 -2.72 -0.08 -1.21 16 21 C -0.10 -2.18 9.61 22.31 0.21 -1.97 16 22 C -0.02 -0.52 6.32 22.32 0.14 -0.38 16 23 Cl -0.04 -0.88 28.96 -2.72 -0.08 -0.96 16 24 C -0.10 -2.53 7.99 22.30 0.18 -2.35 16 25 H 0.07 3.44 5.80 -2.38 -0.01 3.43 16 26 H 0.02 0.89 7.29 -2.39 -0.02 0.87 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.09 3.97 6.04 -2.39 -0.01 3.96 16 29 H 0.07 2.27 3.14 -2.38 -0.01 2.27 16 30 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 31 H 0.39 12.32 7.35 -74.06 -0.54 11.77 16 32 H 0.14 4.10 7.13 -2.91 -0.02 4.08 16 33 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.16 3.73 6.70 -2.91 -0.02 3.71 16 Total: -1.00 -61.03 311.62 3.32 -57.71 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.63 Total: 23.70 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 3.81 Total: -2.42 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -1.51 Total: -64.68 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -1.48 Total: -55.15 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.16 Total: -2.17 kcal Total: -61.03 3.32 -57.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271029173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.100 kcal (2) G-P(sol) polarization free energy of solvation -61.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds