Wall clock time and date at job start Tue Mar 31 2020 12:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35238 * 126.06695 * 2 1 4 4 C 1.40410 * 107.86643 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.97643 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99807 * 0.02562 * 5 4 3 7 7 O 1.21294 * 119.99808 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00035 * 180.02562 * 6 5 4 9 9 H 1.08996 * 115.55487 * 34.41195 * 8 6 5 10 10 C 1.53003 * 117.49810 * 180.08437 * 8 6 5 11 11 C 1.53003 * 117.49530 * 248.74329 * 8 6 5 12 12 Cl 1.80298 * 117.50206 * 359.97438 * 11 8 6 13 13 Cl 1.80303 * 117.49790 * 145.02253 * 11 8 6 14 14 N 1.31224 * 108.05286 * 359.97438 * 4 3 2 15 15 N 1.34965 * 126.06958 * 179.97438 * 2 1 3 16 16 C 1.46502 * 125.97705 * 0.05388 * 15 2 1 17 17 C 1.50704 * 109.47007 * 269.98731 * 16 15 2 18 18 H 1.07997 * 119.99914 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99779 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47121 * 60.00283 * 21 19 17 23 23 H 1.48501 * 109.46938 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47110 * 299.99839 * 21 19 17 25 25 H 1.09007 * 109.47113 * 89.97910 * 1 2 3 26 26 H 1.09000 * 109.47423 * 209.97539 * 1 2 3 27 27 H 1.08999 * 109.47222 * 329.97759 * 1 2 3 28 28 H 1.07998 * 126.07029 * 359.95267 * 3 2 1 29 29 H 0.96999 * 120.00507 * 179.97438 * 5 4 3 30 30 H 1.09000 * 117.49625 * 214.97778 * 10 8 6 31 31 H 1.08994 * 117.49790 * 359.97438 * 10 8 6 32 32 H 1.08998 * 109.46869 * 29.98448 * 16 15 2 33 33 H 1.08994 * 109.47239 * 149.98649 * 16 15 2 34 34 H 0.97001 * 120.00013 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7734 1.4749 0.0003 6 6 4.6367 2.8157 -0.0001 7 8 3.5301 3.3124 -0.0007 8 6 5.8585 3.6978 -0.0011 9 1 6.7143 3.3150 -0.5571 10 6 5.6369 5.2117 0.0005 11 6 6.1438 4.5107 1.2634 12 17 4.9922 4.3405 2.6401 13 17 7.8700 4.7626 1.7192 14 7 3.6336 -0.6576 0.0015 15 7 2.3016 -1.0909 0.0005 16 6 1.8500 -2.4846 0.0000 17 6 1.6944 -2.9627 1.4207 18 1 1.9107 -2.2953 2.2418 19 6 1.2769 -4.2525 1.6721 20 7 1.0140 -5.0653 0.6722 21 14 1.0847 -4.8453 3.4331 22 1 0.0833 -4.0013 4.1330 23 1 0.6269 -6.2580 3.4326 24 1 2.3905 -4.7480 4.1335 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 1.9719 2.1211 -0.0007 29 1 5.6584 1.0777 0.0011 30 1 6.3472 5.8248 -0.5542 31 1 4.6074 5.5696 0.0017 32 1 0.8916 -2.5558 -0.5143 33 1 2.5849 -3.1045 -0.5135 34 1 0.7200 -5.9726 0.8492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271124225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:36 Heat of formation + Delta-G solvation = 39.123298 kcal Electronic energy + Delta-G solvation = -21250.593966 eV Core-core repulsion = 17658.440542 eV Total energy + Delta-G solvation = -3592.153424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.35321 -41.02184 -38.42295 -37.13467 -36.52020 -36.06905 -35.32044 -33.05443 -32.64060 -28.81129 -27.89462 -26.40497 -24.64542 -23.36263 -22.24051 -21.32696 -20.63959 -18.84631 -18.69382 -17.74946 -17.21539 -17.00341 -16.41637 -16.36594 -15.87015 -15.50829 -14.82784 -14.54290 -14.35038 -14.08454 -13.82068 -13.64853 -13.57083 -13.23453 -13.16868 -13.06497 -12.84776 -12.68834 -12.31587 -12.25149 -12.13768 -11.98708 -11.75304 -11.57436 -11.37350 -11.15946 -10.87631 -10.74119 -9.60141 -9.16457 -8.33854 -6.51530 -0.00475 0.77753 0.92708 1.25920 1.35899 1.38241 1.39225 1.48861 1.97341 2.23354 2.35240 2.39824 2.95949 2.97944 3.20145 3.43310 3.88567 4.12140 4.14415 4.46186 4.59606 4.75242 4.76220 4.76912 4.86080 4.97564 4.99030 5.12292 5.24795 5.52431 5.80041 5.91268 6.19805 6.24681 6.60681 6.90445 7.05200 7.19530 8.71948 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003018 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.225640 B = 9275.771836 C = 9787.428762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.273 3.727 5 N -0.617 5.617 6 C 0.547 3.453 7 O -0.524 6.524 8 C -0.154 4.154 9 H 0.186 0.814 10 C -0.085 4.085 11 C 0.008 3.992 12 Cl -0.102 7.102 13 Cl -0.077 7.077 14 N -0.357 5.357 15 N -0.342 5.342 16 C 0.276 3.724 17 C -0.555 4.555 18 H 0.048 0.952 19 C 0.024 3.976 20 N -0.917 5.917 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.276 1.276 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.425 0.575 30 H 0.169 0.831 31 H 0.130 0.870 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.184 21.419 -2.343 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.019 3.981 5 N -0.266 5.266 6 C 0.333 3.667 7 O -0.398 6.398 8 C -0.175 4.175 9 H 0.203 0.797 10 C -0.123 4.123 11 C -0.044 4.044 12 Cl -0.075 7.075 13 Cl -0.049 7.049 14 N -0.187 5.187 15 N -0.124 5.124 16 C 0.157 3.843 17 C -0.593 4.593 18 H 0.067 0.933 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.201 1.201 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.186 0.814 29 H 0.263 0.737 30 H 0.187 0.813 31 H 0.148 0.852 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.073 20.439 -2.251 22.897 hybrid contribution 0.041 -0.540 1.057 1.188 sum 10.114 19.899 -1.194 22.353 Atomic orbital electron populations 1.20502 0.85429 1.04321 1.04160 1.21756 0.96669 0.86483 0.99450 1.21419 0.89804 0.99930 1.21480 1.19267 0.88662 0.89186 1.00973 1.42446 1.07159 1.04977 1.72038 1.19880 0.90485 0.80934 0.75390 1.90660 1.27354 1.74013 1.47730 1.23238 0.99459 0.95703 0.99147 0.79723 1.24210 1.06235 0.91049 0.90757 1.26651 0.82654 1.10591 0.84499 1.98804 1.60740 1.97926 1.50008 1.98771 1.15660 1.96739 1.93776 1.77184 1.00096 1.10040 1.31407 1.48792 1.01739 1.07532 1.54369 1.19234 0.94927 0.72429 0.97692 1.21413 1.47701 0.98391 0.91825 0.93326 1.25708 0.93928 0.95911 1.02136 1.69990 1.44957 1.07571 1.32993 0.85443 0.78730 0.77740 0.78817 1.19061 1.19650 1.20137 0.88772 0.91542 0.87981 0.81370 0.73671 0.81305 0.85212 0.92981 0.95711 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.89 71.23 0.70 -2.13 16 2 C 0.09 3.61 6.92 41.38 0.29 3.90 16 3 C -0.30 -11.73 9.52 22.11 0.21 -11.52 16 4 C 0.27 10.77 8.11 133.32 1.08 11.85 16 5 N -0.62 -17.61 5.45 -307.51 -1.68 -19.29 16 6 C 0.55 13.49 6.67 87.66 0.58 14.08 16 7 O -0.52 -15.97 13.23 -3.07 -0.04 -16.01 16 8 C -0.15 -2.19 6.03 -11.54 -0.07 -2.26 16 9 H 0.19 1.33 8.14 -2.39 -0.02 1.31 16 10 C -0.09 -0.91 9.73 30.62 0.30 -0.61 16 11 C 0.01 0.13 3.62 30.62 0.11 0.24 16 12 Cl -0.10 -2.35 28.19 -2.72 -0.08 -2.42 16 13 Cl -0.08 -1.09 29.29 -2.72 -0.08 -1.17 16 14 N -0.36 -16.55 12.59 -54.45 -0.69 -17.23 16 15 N -0.34 -16.44 3.59 -338.45 -1.22 -17.65 16 16 C 0.28 14.56 5.81 85.63 0.50 15.06 16 17 C -0.56 -31.18 9.39 25.60 0.24 -30.94 16 18 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 19 C 0.02 1.34 5.46 84.65 0.46 1.80 16 20 N -0.92 -51.74 13.29 21.45 0.28 -51.45 16 21 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 26 H 0.07 2.42 7.71 -2.39 -0.02 2.40 16 27 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 28 H 0.17 6.33 5.92 -2.91 -0.02 6.31 16 29 H 0.43 9.59 8.82 -92.71 -0.82 8.78 16 30 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 1.69 7.67 -2.39 -0.02 1.67 16 32 H 0.05 2.71 7.65 -2.39 -0.02 2.70 16 33 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -70.00 332.21 3.28 -66.72 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.34 Total: 13.87 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.41 Total: -0.54 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.29 Total: -105.63 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.04 Total: -16.01 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -3.44 SS G_CDS: -0.16 Total: -3.60 kcal Total: -70.00 3.28 -66.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271124225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.845 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds