Wall clock time and date at job start Tue Mar 31 2020 12:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35242 * 126.06704 * 2 1 4 4 C 1.40415 * 107.86404 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.96854 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00475 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99450 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00247 * 179.97438 * 6 5 4 9 9 H 1.09002 * 115.55213 * 325.67409 * 8 6 5 10 10 C 1.52998 * 117.50040 * 180.02562 * 8 6 5 11 11 C 1.53001 * 60.00149 * 252.51441 * 10 8 6 12 12 Cl 1.80302 * 117.49684 * 252.51384 * 11 10 8 13 13 Cl 1.80290 * 117.50342 * 107.48688 * 11 10 8 14 14 N 1.31215 * 108.05511 * 0.02562 * 4 3 2 15 15 N 1.34967 * 126.07010 * 179.97438 * 2 1 3 16 16 C 1.46494 * 125.97745 * 0.02562 * 15 2 1 17 17 C 1.50708 * 109.47192 * 270.01553 * 16 15 2 18 18 H 1.07999 * 119.99691 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99932 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00062 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99620 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47125 * 90.00099 * 21 19 17 23 23 H 1.48498 * 109.47273 * 209.99912 * 21 19 17 24 24 H 1.48501 * 109.47143 * 330.00731 * 21 19 17 25 25 H 1.08998 * 109.47722 * 90.02188 * 1 2 3 26 26 H 1.09004 * 109.47288 * 210.02670 * 1 2 3 27 27 H 1.09003 * 109.47409 * 330.02154 * 1 2 3 28 28 H 1.07998 * 126.06517 * 0.22601 * 3 2 1 29 29 H 0.97004 * 119.99864 * 180.02562 * 5 4 3 30 30 H 1.09002 * 117.49485 * 359.97438 * 10 8 6 31 31 H 1.08997 * 117.49994 * 145.01981 * 10 8 6 32 32 H 1.09000 * 109.47505 * 30.01115 * 16 15 2 33 33 H 1.08999 * 109.47914 * 150.01197 * 16 15 2 34 34 H 0.97001 * 119.99574 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6366 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0023 9 1 6.7144 3.3147 0.5579 10 6 5.6369 5.2117 0.0024 11 6 6.1428 4.5127 -1.2611 12 17 7.8686 4.7653 -1.7179 13 17 4.9905 4.3441 -2.6374 14 7 3.6336 -0.6576 0.0004 15 7 2.3016 -1.0909 0.0005 16 6 1.8501 -2.4846 0.0006 17 6 1.6943 -2.9621 1.4215 18 1 1.9098 -2.2941 2.2423 19 6 1.2758 -4.2514 1.6735 20 7 1.0131 -5.0646 0.6740 21 14 1.0835 -4.8434 3.4347 22 1 -0.2991 -4.5681 3.9013 23 1 1.3455 -6.3038 3.4975 24 1 2.0512 -4.1289 4.3056 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3634 0.8902 0.5135 28 1 1.9718 2.1211 0.0034 29 1 5.6584 1.0778 0.0013 30 1 4.6073 5.5697 0.0010 31 1 6.3473 5.8243 0.5574 32 1 0.8917 -2.5561 -0.5137 33 1 2.5849 -3.1048 -0.5127 34 1 0.7190 -5.9718 0.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271124228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:39 Heat of formation + Delta-G solvation = 39.122851 kcal Electronic energy + Delta-G solvation = -21215.766097 eV Core-core repulsion = 17623.612653 eV Total energy + Delta-G solvation = -3592.153443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.35368 -41.02357 -38.42490 -37.13264 -36.52057 -36.07005 -35.31795 -33.05512 -32.64073 -28.81064 -27.89517 -26.40582 -24.64540 -23.36034 -22.24180 -21.32721 -20.64093 -18.85550 -18.68007 -17.74882 -17.23435 -16.99448 -16.49658 -16.15140 -16.01910 -15.48607 -14.82331 -14.54197 -14.35236 -14.07268 -13.82174 -13.63365 -13.57791 -13.27444 -13.16173 -13.04834 -12.82967 -12.68082 -12.31847 -12.25432 -12.12549 -11.98152 -11.74987 -11.57398 -11.36663 -11.15992 -10.87714 -10.73570 -9.60274 -9.16435 -8.33332 -6.51135 -0.00782 0.77250 0.94353 1.23193 1.38002 1.38320 1.39618 1.51223 1.97155 2.23834 2.36820 2.38318 2.96594 2.98264 3.19950 3.43320 3.88534 4.12127 4.14351 4.46289 4.59589 4.75133 4.76001 4.76672 4.86128 4.97570 4.98794 5.12218 5.24769 5.53132 5.80228 5.91227 6.19721 6.24851 6.61287 6.90384 7.05132 7.20073 8.72788 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.002769 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.102121 B =10108.922015 C =10398.877695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.273 3.727 5 N -0.617 5.617 6 C 0.547 3.453 7 O -0.524 6.524 8 C -0.155 4.155 9 H 0.184 0.816 10 C -0.087 4.087 11 C 0.011 3.989 12 Cl -0.076 7.076 13 Cl -0.100 7.100 14 N -0.357 5.357 15 N -0.342 5.342 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.169 0.831 29 H 0.425 0.575 30 H 0.130 0.870 31 H 0.169 0.831 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 21.430 -1.715 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.019 3.981 5 N -0.266 5.266 6 C 0.333 3.667 7 O -0.398 6.398 8 C -0.177 4.177 9 H 0.202 0.798 10 C -0.124 4.124 11 C -0.042 4.042 12 Cl -0.049 7.049 13 Cl -0.073 7.073 14 N -0.187 5.187 15 N -0.124 5.124 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.069 0.931 19 C -0.178 4.178 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.186 0.814 29 H 0.263 0.737 30 H 0.148 0.852 31 H 0.186 0.814 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.059 20.453 -1.936 22.875 hybrid contribution 0.032 -0.549 0.321 0.637 sum 10.090 19.905 -1.615 22.375 Atomic orbital electron populations 1.20502 0.85421 1.04431 1.04059 1.21758 0.96672 0.86477 0.99453 1.21423 0.89798 0.99932 1.21480 1.19266 0.88665 0.89184 1.00970 1.42447 1.07161 1.04976 1.72040 1.19875 0.90479 0.80931 0.75389 1.90659 1.27347 1.74014 1.47736 1.23231 0.99454 0.95691 0.99282 0.79849 1.24198 1.06241 0.91065 0.90895 1.26615 0.82673 1.10372 0.84509 1.98772 1.15687 1.96726 1.93740 1.98800 1.60636 1.97933 1.49906 1.77182 1.00097 1.10046 1.31408 1.48789 1.01742 1.07529 1.54373 1.19241 0.94858 0.72438 0.97820 1.21435 1.47563 0.98392 0.91733 0.93149 1.25740 0.93936 0.95921 1.02246 1.70003 1.45037 1.07576 1.33041 0.85348 0.78993 0.77540 0.78566 1.18940 1.19977 1.19966 0.89023 0.91444 0.87819 0.81359 0.73673 0.85208 0.81387 0.93100 0.95815 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.89 71.23 0.70 -2.13 16 2 C 0.09 3.61 6.92 41.38 0.29 3.90 16 3 C -0.30 -11.74 9.52 22.11 0.21 -11.53 16 4 C 0.27 10.78 8.11 133.33 1.08 11.87 16 5 N -0.62 -17.64 5.45 -307.51 -1.68 -19.32 16 6 C 0.55 13.52 6.67 87.66 0.58 14.10 16 7 O -0.52 -15.98 13.22 -3.07 -0.04 -16.02 16 8 C -0.15 -2.22 6.03 -11.54 -0.07 -2.29 16 9 H 0.18 1.39 8.14 -2.39 -0.02 1.37 16 10 C -0.09 -0.93 9.73 30.59 0.30 -0.63 16 11 C 0.01 0.16 3.61 30.60 0.11 0.27 16 12 Cl -0.08 -1.06 29.29 -2.72 -0.08 -1.14 16 13 Cl -0.10 -2.19 28.18 -2.72 -0.08 -2.27 16 14 N -0.36 -16.57 12.59 -54.45 -0.69 -17.25 16 15 N -0.34 -16.45 3.59 -338.45 -1.22 -17.67 16 16 C 0.28 14.54 5.81 85.64 0.50 15.04 16 17 C -0.55 -30.86 9.39 25.60 0.24 -30.62 16 18 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 19 C 0.02 1.23 5.46 84.66 0.46 1.69 16 20 N -0.92 -51.77 13.29 21.45 0.28 -51.48 16 21 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.07 2.44 7.71 -2.38 -0.02 2.42 16 27 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.17 6.33 5.92 -2.91 -0.02 6.31 16 29 H 0.43 9.61 8.82 -92.71 -0.82 8.80 16 30 H 0.13 1.70 7.67 -2.39 -0.02 1.68 16 31 H 0.17 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 2.67 7.65 -2.39 -0.02 2.65 16 33 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -69.65 332.20 3.28 -66.37 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.34 Total: 14.33 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.41 Total: -0.32 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.29 Total: -105.72 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.04 Total: -16.02 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.16 Total: -3.41 kcal Total: -69.65 3.28 -66.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271124228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.491 kcal (2) G-P(sol) polarization free energy of solvation -69.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds