Wall clock time and date at job start Tue Mar 31 2020 11:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99823 * 2 1 4 4 H 1.48494 * 109.47235 * 269.99628 * 3 2 1 5 5 H 1.48503 * 109.47419 * 29.99760 * 3 2 1 6 6 H 1.48510 * 109.46862 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00593 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47191 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46785 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99730 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99832 * 180.02562 * 12 11 10 15 15 O 1.42904 * 109.47109 * 179.97438 * 14 12 11 16 16 C 1.35945 * 117.00344 * 179.97438 * 15 14 12 17 17 C 1.38698 * 120.04311 * 0.27408 * 16 15 14 18 18 C 1.38149 * 119.97097 * 180.23552 * 17 16 15 19 19 C 1.38385 * 120.06093 * 359.48600 * 18 17 16 20 20 Cl 1.73597 * 119.95375 * 180.27892 * 19 18 17 21 21 C 1.38341 * 120.09069 * 0.25867 * 19 18 17 22 22 C 1.38256 * 120.03355 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03249 * 180.02562 * 22 21 19 24 24 H 0.97003 * 120.00335 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46813 * 59.99746 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00113 * 9 7 2 27 27 H 1.09000 * 109.46902 * 60.00749 * 10 9 7 28 28 H 1.08994 * 109.47391 * 299.99763 * 10 9 7 29 29 H 0.96991 * 120.00603 * 0.02562 * 11 10 9 30 30 H 1.08991 * 109.47663 * 59.99963 * 14 12 11 31 31 H 1.09008 * 109.47101 * 299.99179 * 14 12 11 32 32 H 1.08002 * 120.02026 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.97347 * 179.77134 * 18 17 16 34 34 H 1.07999 * 119.98285 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0980 0.0003 13 8 3.3993 -6.0980 0.0007 14 6 1.4330 -7.4031 -0.0009 15 8 2.3616 -8.4893 -0.0008 16 6 1.8420 -9.7455 -0.0013 17 6 0.4671 -9.9283 -0.0076 18 6 -0.0593 -11.2056 -0.0031 19 6 0.7839 -12.3029 -0.0031 20 17 0.1194 -13.9067 -0.0049 21 6 2.1557 -12.1235 -0.0022 22 6 2.6866 -10.8470 -0.0017 23 17 4.4080 -10.6219 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 0.8073 -7.4606 -0.8915 31 1 0.8054 -7.4611 0.8885 32 1 -0.1917 -9.0726 -0.0117 33 1 -1.1299 -11.3480 -0.0043 34 1 2.8121 -12.9811 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273032153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:49 Heat of formation + Delta-G solvation = -70.595387 kcal Electronic energy + Delta-G solvation = -20314.072901 eV Core-core repulsion = 16684.868967 eV Total energy + Delta-G solvation = -3629.203934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79921 -39.32308 -37.93458 -36.91192 -36.39553 -34.97024 -32.95415 -31.52883 -30.78106 -29.90519 -28.07136 -24.76821 -23.46019 -22.80617 -21.12543 -20.37872 -18.93842 -17.36829 -17.15178 -16.66045 -16.52814 -16.13078 -15.28198 -15.06930 -14.89136 -14.53049 -14.51190 -14.00300 -13.77746 -13.11647 -13.10947 -12.85487 -12.57045 -12.35223 -11.95382 -11.73590 -11.35957 -11.28397 -11.12278 -11.09734 -11.03208 -10.69392 -10.41819 -9.91073 -9.57272 -9.45854 -9.28978 -8.68170 -8.56260 -8.44670 -6.15039 -4.18075 0.54411 0.62632 1.52200 1.95806 2.40372 2.73713 2.96328 3.26320 3.32716 3.36746 3.65846 4.19540 4.26643 4.37496 4.50622 4.68462 4.79206 4.81331 4.86727 5.09452 5.20740 5.22347 5.53019 5.60819 5.88046 6.20656 6.24773 6.62463 6.70196 6.78801 7.43109 7.52807 7.79278 7.83302 8.19903 8.43700 8.87680 9.47217 10.96481 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.002082 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.875976 B =13445.533026 C =14369.659280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.717 5.717 12 C 0.507 3.493 13 O -0.522 6.522 14 C 0.035 3.965 15 O -0.271 6.271 16 C 0.150 3.850 17 C -0.189 4.189 18 C -0.062 4.062 19 C -0.067 4.067 20 Cl -0.062 7.062 21 C -0.063 4.063 22 C -0.060 4.060 23 Cl -0.037 7.037 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.399 0.601 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -26.747 -0.008 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.369 5.369 12 C 0.290 3.710 13 O -0.398 6.398 14 C -0.043 4.043 15 O -0.182 6.182 16 C 0.102 3.898 17 C -0.209 4.209 18 C -0.081 4.081 19 C -0.094 4.094 20 Cl -0.033 7.033 21 C -0.083 4.083 22 C -0.088 4.088 23 Cl -0.008 7.008 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.167 0.833 33 H 0.161 0.839 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.650 -26.649 -0.003 26.700 hybrid contribution -0.329 0.853 -0.010 0.914 sum -1.979 -25.795 -0.013 25.871 Atomic orbital electron populations 1.69948 1.06091 1.26962 1.50273 1.24996 0.94918 0.99468 0.94909 0.86497 0.79844 0.82896 0.78240 1.20525 1.21145 1.19698 1.21036 0.93289 0.90302 1.51514 0.92185 1.19333 0.94178 0.91030 0.97932 1.21802 0.96106 0.80816 1.01139 1.46193 1.10616 1.06041 1.74037 1.19832 0.88328 0.84614 0.78209 1.90755 1.13471 1.87206 1.48378 1.22717 0.92160 0.85412 1.04043 1.86299 1.33967 1.10722 1.87206 1.18831 0.91350 0.84781 0.94851 1.21248 0.93095 0.98696 1.07811 1.20949 1.00475 0.90235 0.96426 1.20588 0.92726 0.86807 1.09298 1.98381 1.85556 1.22243 1.97135 1.20754 0.93699 0.95678 0.98142 1.20012 0.86417 0.91751 1.10596 1.98414 1.08199 1.97334 1.96848 0.92795 0.95858 0.95838 0.92251 0.92262 0.76733 0.88622 0.88616 0.83303 0.83872 0.83245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.72 -11.27 5.56 -60.29 -0.33 -11.60 16 12 C 0.51 7.96 7.91 -10.98 -0.09 7.88 16 13 O -0.52 -10.72 16.50 -14.35 -0.24 -10.96 16 14 C 0.04 0.38 5.22 36.01 0.19 0.56 16 15 O -0.27 -3.53 9.13 -39.48 -0.36 -3.89 16 16 C 0.15 1.60 6.68 -39.20 -0.26 1.33 16 17 C -0.19 -1.48 9.04 -39.44 -0.36 -1.83 16 18 C -0.06 -0.44 9.82 -39.56 -0.39 -0.83 16 19 C -0.07 -0.53 6.32 -39.49 -0.25 -0.78 16 20 Cl -0.06 -0.45 28.95 -51.86 -1.50 -1.96 16 21 C -0.06 -0.54 9.61 -39.54 -0.38 -0.92 16 22 C -0.06 -0.63 6.33 -39.37 -0.25 -0.88 16 23 Cl -0.04 -0.43 28.50 -51.86 -1.48 -1.91 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.40 5.04 8.47 -40.82 -0.35 4.70 16 30 H 0.10 0.73 7.65 -51.93 -0.40 0.34 16 31 H 0.10 0.73 7.67 -51.92 -0.40 0.34 16 32 H 0.15 0.79 6.30 -52.49 -0.33 0.46 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.30 333.81 -9.08 -41.38 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.55 Total: -1.56 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.36 Total: -5.76 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.40 Total: -36.36 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.60 Total: -14.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.98 Total: -3.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.30 -9.08 -41.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.219 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds