Wall clock time and date at job start Tue Mar 31 2020 11:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99823 * 2 1 4 4 H 1.48494 * 109.47235 * 269.99628 * 3 2 1 5 5 H 1.48503 * 109.47419 * 29.99760 * 3 2 1 6 6 H 1.48510 * 109.46862 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99585 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00593 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47191 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46785 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99730 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00015 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99832 * 180.02562 * 12 11 10 15 15 O 1.42904 * 109.47109 * 179.97438 * 14 12 11 16 16 C 1.35945 * 117.00344 * 179.97438 * 15 14 12 17 17 C 1.38698 * 120.04311 * 0.27408 * 16 15 14 18 18 C 1.38149 * 119.97097 * 180.23552 * 17 16 15 19 19 C 1.38385 * 120.06093 * 359.48600 * 18 17 16 20 20 Cl 1.73597 * 119.95375 * 180.27892 * 19 18 17 21 21 C 1.38341 * 120.09069 * 0.25867 * 19 18 17 22 22 C 1.38256 * 120.03355 * 359.97438 * 21 19 18 23 23 Cl 1.73603 * 120.03249 * 180.02562 * 22 21 19 24 24 H 0.97003 * 120.00335 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46813 * 59.99746 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00113 * 9 7 2 27 27 H 1.09000 * 109.46902 * 60.00749 * 10 9 7 28 28 H 1.08994 * 109.47391 * 299.99763 * 10 9 7 29 29 H 0.96991 * 120.00603 * 0.02562 * 11 10 9 30 30 H 1.08991 * 109.47663 * 59.99963 * 14 12 11 31 31 H 1.09008 * 109.47101 * 299.99179 * 14 12 11 32 32 H 1.08002 * 120.02026 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.97347 * 179.77134 * 18 17 16 34 34 H 1.07999 * 119.98285 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1865 -6.0980 0.0003 13 8 3.3993 -6.0980 0.0007 14 6 1.4330 -7.4031 -0.0009 15 8 2.3616 -8.4893 -0.0008 16 6 1.8420 -9.7455 -0.0013 17 6 0.4671 -9.9283 -0.0076 18 6 -0.0593 -11.2056 -0.0031 19 6 0.7839 -12.3029 -0.0031 20 17 0.1194 -13.9067 -0.0049 21 6 2.1557 -12.1235 -0.0022 22 6 2.6866 -10.8470 -0.0017 23 17 4.4080 -10.6219 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 0.8073 -7.4606 -0.8915 31 1 0.8054 -7.4611 0.8885 32 1 -0.1917 -9.0726 -0.0117 33 1 -1.1299 -11.3480 -0.0043 34 1 2.8121 -12.9811 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273032153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:49 Heat of formation + Delta-G solvation = -90.262082 kcal Electronic energy + Delta-G solvation = -20314.925713 eV Core-core repulsion = 16684.868967 eV Total energy + Delta-G solvation = -3630.056746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60249 -40.48059 -38.75032 -37.65178 -37.07928 -36.58456 -34.84834 -32.27023 -31.95948 -31.02569 -29.17393 -26.53105 -24.21090 -23.57309 -22.83689 -21.63534 -19.67399 -18.59993 -18.32793 -17.82650 -17.54774 -17.13619 -16.55044 -16.36916 -16.17740 -15.83086 -15.17279 -15.03978 -14.94288 -14.38066 -14.29564 -14.02150 -13.53731 -13.34688 -13.22415 -12.95427 -12.63992 -12.54001 -12.53185 -12.23052 -11.96353 -11.91735 -11.69770 -11.67615 -11.45708 -10.90045 -10.60123 -10.09939 -10.07884 -9.26232 -8.24269 -6.33852 -0.08414 -0.01919 0.86228 1.23592 1.42073 1.42307 1.51153 1.52402 1.55146 2.33289 2.39152 2.63190 3.10888 3.51151 3.62702 3.82358 3.94610 4.03560 4.09761 4.15966 4.47607 4.49540 4.53042 4.59502 4.85989 4.95603 5.01678 5.24114 5.29579 5.48023 5.59713 5.78793 6.02824 6.16671 6.56640 6.79267 7.20847 7.35328 8.87244 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.002082 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.875976 B =13445.533026 C =14369.659280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.708 5.708 12 C 0.505 3.495 13 O -0.577 6.577 14 C 0.042 3.958 15 O -0.304 6.304 16 C 0.131 3.869 17 C -0.180 4.180 18 C -0.056 4.056 19 C -0.070 4.070 20 Cl -0.056 7.056 21 C -0.065 4.065 22 C -0.079 4.079 23 Cl -0.061 7.061 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.417 0.583 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 -27.529 -0.022 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.361 5.361 12 C 0.291 3.709 13 O -0.457 6.457 14 C -0.035 4.035 15 O -0.217 6.217 16 C 0.084 3.916 17 C -0.198 4.198 18 C -0.074 4.074 19 C -0.097 4.097 20 Cl -0.027 7.027 21 C -0.084 4.084 22 C -0.106 4.106 23 Cl -0.032 7.032 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.254 0.746 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.197 0.803 33 H 0.189 0.811 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.406 -27.459 -0.019 27.669 hybrid contribution 0.140 0.995 -0.006 1.004 sum -3.267 -26.464 -0.024 26.665 Atomic orbital electron populations 1.70037 1.07364 1.27974 1.50988 1.25819 0.95805 1.02920 0.94508 0.85493 0.78638 0.78735 0.78478 1.19842 1.20516 1.19271 1.21470 0.93555 0.92068 1.51494 0.92518 1.19135 0.94185 0.91389 0.96722 1.21248 0.95121 0.81961 0.99917 1.45914 1.11372 1.04889 1.73936 1.20721 0.87900 0.86042 0.76210 1.90734 1.16149 1.88095 1.50698 1.22769 0.91124 0.82001 1.07598 1.86236 1.35552 1.11876 1.88016 1.19036 0.92590 0.83708 0.96285 1.21562 0.91980 1.00036 1.06254 1.21302 1.01762 0.89555 0.94785 1.20741 0.92595 0.87509 1.08847 1.98388 1.85329 1.21916 1.97074 1.20858 0.94398 0.95299 0.97869 1.20216 0.85383 0.92757 1.12280 1.98399 1.10250 1.97451 1.97077 0.92532 0.96893 0.96878 0.93562 0.93549 0.74640 0.84855 0.84851 0.80290 0.81118 0.82341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.68 13.29 21.45 0.28 -52.39 16 2 C 0.01 0.46 5.46 84.65 0.46 0.93 16 3 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -29.81 9.11 25.60 0.23 -29.58 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.75 5.61 86.38 0.48 6.23 16 11 N -0.71 -21.55 5.56 -463.06 -2.57 -24.13 16 12 C 0.50 15.37 7.91 87.66 0.69 16.06 16 13 O -0.58 -24.07 16.50 16.00 0.26 -23.80 16 14 C 0.04 0.78 5.22 71.24 0.37 1.16 16 15 O -0.30 -7.53 9.13 -73.90 -0.67 -8.20 16 16 C 0.13 2.55 6.68 22.51 0.15 2.70 16 17 C -0.18 -2.15 9.04 22.36 0.20 -1.94 16 18 C -0.06 -0.59 9.82 22.28 0.22 -0.37 16 19 C -0.07 -0.94 6.32 22.33 0.14 -0.80 16 20 Cl -0.06 -0.70 28.95 -2.72 -0.08 -0.78 16 21 C -0.07 -1.04 9.61 22.30 0.21 -0.82 16 22 C -0.08 -1.61 6.33 22.41 0.14 -1.47 16 23 Cl -0.06 -1.46 28.50 -2.72 -0.08 -1.54 16 24 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.42 9.71 8.47 -92.71 -0.79 8.93 16 30 H 0.13 1.47 7.65 -2.39 -0.02 1.45 16 31 H 0.13 1.47 7.67 -2.38 -0.02 1.45 16 32 H 0.18 0.96 6.30 -2.91 -0.02 0.94 16 33 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.71 333.81 3.00 -68.71 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 0.36 Total: 3.83 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 3.47 Total: -6.65 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -2.29 Total: -76.52 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.41 Total: -32.00 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.16 Total: -2.31 kcal Total: -71.71 3.00 -68.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.548 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds