Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47191 * 270.00126 * 3 2 1 5 5 H 1.48503 * 109.47431 * 29.99860 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00087 * 3 2 1 7 7 C 1.37872 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47495 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00058 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00012 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99850 * 180.02562 * 12 11 10 15 15 O 1.42908 * 109.46927 * 179.97438 * 14 12 11 16 16 C 1.35949 * 116.99711 * 179.97438 * 15 14 12 17 17 C 1.38795 * 120.06449 * 89.99509 * 16 15 14 18 18 Cl 1.73602 * 120.02971 * 359.70216 * 17 16 15 19 19 C 1.38259 * 119.93736 * 179.97438 * 17 16 15 20 20 C 1.38261 * 120.06498 * 0.02602 * 19 17 16 21 21 C 1.38259 * 120.12483 * 359.95475 * 20 19 17 22 22 C 1.38264 * 120.06459 * 0.04246 * 21 20 19 23 23 Cl 1.73595 * 120.03396 * 180.02562 * 22 21 20 24 24 H 0.96998 * 119.99501 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46895 * 59.99862 * 9 7 2 26 26 H 1.08994 * 109.47212 * 300.00465 * 9 7 2 27 27 H 1.08995 * 109.47078 * 60.00211 * 10 9 7 28 28 H 1.09006 * 109.46917 * 300.00171 * 10 9 7 29 29 H 0.96997 * 119.99954 * 359.97438 * 11 10 9 30 30 H 1.08995 * 109.47433 * 59.99448 * 14 12 11 31 31 H 1.09001 * 109.46950 * 299.98708 * 14 12 11 32 32 H 1.08001 * 119.97088 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.93703 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.96920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4864 -2.6368 -0.0022 12 6 6.1602 -3.8040 -0.0037 13 8 5.5538 -4.8542 -0.0046 14 6 7.6673 -3.8040 -0.0031 15 8 8.1435 -5.1514 -0.0043 16 6 9.4913 -5.3295 -0.0044 17 6 10.1806 -5.4216 1.1967 18 17 9.3236 -5.3017 2.7017 19 6 11.5512 -5.6033 1.1935 20 6 12.2353 -5.6928 -0.0047 21 6 11.5512 -5.6018 -1.2028 22 6 10.1805 -5.4201 -1.2057 23 17 9.3223 -5.3067 -2.7104 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6802 -0.8910 27 1 3.6578 -3.1499 -0.8924 28 1 3.6584 -3.1511 0.8875 29 1 5.9715 -1.7968 -0.0019 30 1 8.0303 -3.2915 0.8877 31 1 8.0309 -3.2891 -0.8922 32 1 12.0882 -5.6746 2.1278 33 1 13.3059 -5.8343 -0.0048 34 1 12.0880 -5.6724 -2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273048264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -62.873959 kcal Electronic energy + Delta-G solvation = -20791.321305 eV Core-core repulsion = 17162.452197 eV Total energy + Delta-G solvation = -3628.869108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59539 -39.29871 -37.58954 -37.10208 -36.61205 -34.99497 -32.84426 -31.17910 -31.04709 -30.24548 -28.03328 -24.66275 -23.44288 -22.96060 -20.86580 -20.43425 -18.70169 -17.26465 -17.13614 -17.05414 -16.87304 -15.69541 -15.50965 -14.99573 -14.84186 -14.59903 -14.19784 -14.14838 -13.60088 -13.12350 -12.99272 -12.71247 -12.69127 -12.57382 -12.26787 -11.51574 -11.50829 -11.42317 -11.35141 -11.22098 -10.43149 -10.35353 -10.30158 -9.98440 -9.54586 -9.31787 -9.24724 -9.19657 -8.67468 -8.57989 -6.12170 -4.12521 0.36727 0.42980 1.45088 1.87887 2.56642 2.81042 3.00805 3.24037 3.31564 3.32753 3.78963 4.22863 4.36366 4.42568 4.58061 4.67903 4.80757 4.80935 4.94093 4.96884 5.20607 5.41079 5.45532 5.63239 5.87111 6.06222 6.17944 6.53141 6.66495 6.87477 7.11281 7.20510 7.64512 7.80177 8.41137 8.48593 8.92301 9.47646 11.00902 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002763 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.050763 B =10133.129046 C =10723.471611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.132 3.868 11 N -0.723 5.723 12 C 0.511 3.489 13 O -0.519 6.519 14 C 0.047 3.953 15 O -0.291 6.291 16 C 0.114 3.886 17 C -0.046 4.046 18 Cl -0.039 7.039 19 C -0.096 4.096 20 C -0.101 4.101 21 C -0.096 4.096 22 C -0.046 4.046 23 Cl -0.038 7.038 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.397 0.603 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.395 -8.797 0.010 31.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.010 3.990 11 N -0.376 5.376 12 C 0.294 3.706 13 O -0.394 6.394 14 C -0.031 4.031 15 O -0.206 6.206 16 C 0.068 3.932 17 C -0.074 4.074 18 Cl -0.009 7.009 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.074 4.074 23 Cl -0.009 7.009 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 29.441 -9.569 0.013 30.957 hybrid contribution 0.561 1.531 -0.019 1.630 sum 30.002 -8.038 -0.006 31.060 Atomic orbital electron populations 1.69906 1.06295 1.27069 1.50343 1.25001 0.94770 0.99150 0.94365 0.86748 0.80258 0.83543 0.78501 1.20215 1.21262 1.19076 1.20913 0.88594 0.94943 1.51727 0.90569 1.19801 0.98049 0.91211 0.96890 1.21553 0.75228 1.00293 1.01877 1.46180 1.09296 1.07317 1.74764 1.19843 0.88046 0.84815 0.77853 1.90743 1.69610 1.31036 1.48026 1.22567 0.94197 0.83176 1.03137 1.86210 1.15126 1.25275 1.93973 1.18184 0.84394 1.00971 0.89675 1.21344 0.92995 1.05507 0.87526 1.98422 1.77086 1.96161 1.29263 1.21151 0.91387 0.99010 0.99935 1.21139 1.00743 0.99247 0.90799 1.21151 0.91394 0.99002 0.99936 1.21345 0.92988 1.05514 0.87529 1.98422 1.77014 1.96212 1.29276 0.92527 0.95930 0.96373 0.91738 0.91723 0.77017 0.89722 0.89722 0.83743 0.83699 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 11 N -0.72 -11.72 5.56 -60.30 -0.33 -12.06 16 12 C 0.51 8.54 7.91 -10.99 -0.09 8.45 16 13 O -0.52 -11.04 16.50 -14.35 -0.24 -11.28 16 14 C 0.05 0.59 6.54 36.01 0.24 0.82 16 15 O -0.29 -4.09 8.51 -39.49 -0.34 -4.43 16 16 C 0.11 1.29 5.71 -39.17 -0.22 1.06 16 17 C -0.05 -0.45 6.33 -39.37 -0.25 -0.70 16 18 Cl -0.04 -0.41 28.50 -51.86 -1.48 -1.89 16 19 C -0.10 -0.63 9.83 -39.57 -0.39 -1.02 16 20 C -0.10 -0.53 10.04 -39.57 -0.40 -0.92 16 21 C -0.10 -0.63 9.83 -39.56 -0.39 -1.02 16 22 C -0.05 -0.45 6.33 -39.37 -0.25 -0.70 16 23 Cl -0.04 -0.41 28.50 -51.86 -1.48 -1.89 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.50 7.20 -51.92 -0.37 0.12 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.40 5.13 8.47 -40.82 -0.35 4.78 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 333.45 15.07 5.02 5.02 Total: -1.00 -33.99 333.45 -8.71 -42.70 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.66 Total: -0.84 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.32 Total: -5.04 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.44 Total: -38.59 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.57 Total: -15.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -2.96 Total: -3.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.99 -8.71 -42.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273048264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.175 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds