Wall clock time and date at job start Tue Mar 31 2020 11:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00201 * 2 1 4 4 H 1.48502 * 109.47191 * 270.00126 * 3 2 1 5 5 H 1.48503 * 109.47431 * 29.99860 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00087 * 3 2 1 7 7 C 1.37872 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00315 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00109 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47495 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00058 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00012 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99850 * 180.02562 * 12 11 10 15 15 O 1.42908 * 109.46927 * 179.97438 * 14 12 11 16 16 C 1.35949 * 116.99711 * 179.97438 * 15 14 12 17 17 C 1.38795 * 120.06449 * 89.99509 * 16 15 14 18 18 Cl 1.73602 * 120.02971 * 359.70216 * 17 16 15 19 19 C 1.38259 * 119.93736 * 179.97438 * 17 16 15 20 20 C 1.38261 * 120.06498 * 0.02602 * 19 17 16 21 21 C 1.38259 * 120.12483 * 359.95475 * 20 19 17 22 22 C 1.38264 * 120.06459 * 0.04246 * 21 20 19 23 23 Cl 1.73595 * 120.03396 * 180.02562 * 22 21 20 24 24 H 0.96998 * 119.99501 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.46895 * 59.99862 * 9 7 2 26 26 H 1.08994 * 109.47212 * 300.00465 * 9 7 2 27 27 H 1.08995 * 109.47078 * 60.00211 * 10 9 7 28 28 H 1.09006 * 109.46917 * 300.00171 * 10 9 7 29 29 H 0.96997 * 119.99954 * 359.97438 * 11 10 9 30 30 H 1.08995 * 109.47433 * 59.99448 * 14 12 11 31 31 H 1.09001 * 109.46950 * 299.98708 * 14 12 11 32 32 H 1.08001 * 119.97088 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.93703 * 179.97438 * 20 19 17 34 34 H 1.07995 * 119.96920 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4864 -2.6368 -0.0022 12 6 6.1602 -3.8040 -0.0037 13 8 5.5538 -4.8542 -0.0046 14 6 7.6673 -3.8040 -0.0031 15 8 8.1435 -5.1514 -0.0043 16 6 9.4913 -5.3295 -0.0044 17 6 10.1806 -5.4216 1.1967 18 17 9.3236 -5.3017 2.7017 19 6 11.5512 -5.6033 1.1935 20 6 12.2353 -5.6928 -0.0047 21 6 11.5512 -5.6018 -1.2028 22 6 10.1805 -5.4201 -1.2057 23 17 9.3223 -5.3067 -2.7104 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6802 -0.8910 27 1 3.6578 -3.1499 -0.8924 28 1 3.6584 -3.1511 0.8875 29 1 5.9715 -1.7968 -0.0019 30 1 8.0303 -3.2915 0.8877 31 1 8.0309 -3.2891 -0.8922 32 1 12.0882 -5.6746 2.1278 33 1 13.3059 -5.8343 -0.0048 34 1 12.0880 -5.6724 -2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273048264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:30 Heat of formation + Delta-G solvation = -85.242642 kcal Electronic energy + Delta-G solvation = -20792.291283 eV Core-core repulsion = 17162.452197 eV Total energy + Delta-G solvation = -3629.839087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42331 -40.51006 -38.46077 -37.81371 -37.30919 -36.65273 -34.83227 -32.45329 -31.74761 -31.35633 -29.21765 -26.44891 -24.02619 -23.63493 -22.69442 -21.82334 -19.48591 -18.98017 -18.37563 -17.90297 -17.82741 -16.85387 -16.71328 -16.22164 -15.88228 -15.53909 -15.51773 -15.46054 -14.78805 -14.52786 -14.33816 -13.95187 -13.44025 -13.39207 -13.36385 -13.06688 -12.85335 -12.24095 -12.20030 -12.16766 -12.14229 -12.06030 -11.76401 -11.52942 -11.20946 -10.95209 -10.79242 -10.13900 -9.85561 -9.84283 -8.30372 -6.38068 -0.25485 -0.13573 0.77498 1.20544 1.39231 1.42169 1.48679 1.53329 1.65141 2.30252 2.36884 2.77723 3.04772 3.63809 3.72131 3.83288 3.96698 4.07525 4.09767 4.15936 4.29103 4.33368 4.40631 4.72967 4.89844 4.98814 5.09119 5.14364 5.37045 5.39363 5.43729 5.61686 6.05913 6.21225 6.51787 6.70141 7.17213 7.26536 8.86597 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.002763 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.050763 B =10133.129046 C =10723.471611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.012 4.012 10 C 0.146 3.854 11 N -0.710 5.710 12 C 0.510 3.490 13 O -0.572 6.572 14 C 0.057 3.943 15 O -0.319 6.319 16 C 0.085 3.915 17 C -0.059 4.059 18 Cl -0.057 7.057 19 C -0.090 4.090 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.059 4.059 23 Cl -0.057 7.057 24 H 0.268 0.732 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.417 0.583 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.138 -7.351 0.020 35.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.023 3.977 11 N -0.363 5.363 12 C 0.296 3.704 13 O -0.451 6.451 14 C -0.020 4.020 15 O -0.235 6.235 16 C 0.040 3.960 17 C -0.087 4.087 18 Cl -0.028 7.028 19 C -0.108 4.108 20 C -0.100 4.100 21 C -0.108 4.108 22 C -0.087 4.087 23 Cl -0.028 7.028 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.254 0.746 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.187 0.813 33 H 0.205 0.795 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 34.237 -8.114 0.024 35.185 hybrid contribution -0.865 0.946 -0.025 1.282 sum 33.372 -7.167 -0.001 34.133 Atomic orbital electron populations 1.70084 1.08659 1.28463 1.51949 1.26107 0.95705 1.03967 0.93622 0.85521 0.79727 0.77150 0.79371 1.18939 1.21333 1.15707 1.21259 0.91639 0.93365 1.51651 0.95439 1.19655 0.94364 0.92635 0.98316 1.21064 0.77847 0.98716 1.00105 1.45871 1.07527 1.08570 1.74377 1.20602 0.89962 0.83759 0.76075 1.90719 1.71106 1.32913 1.50318 1.22482 0.90466 0.83757 1.05330 1.86167 1.17280 1.25729 1.94362 1.18408 0.83368 1.03348 0.90902 1.21510 0.94032 1.06855 0.86289 1.98412 1.77789 1.96358 1.30242 1.21533 0.90094 0.97418 1.01761 1.21632 1.02529 0.96441 0.89372 1.21533 0.90101 0.97410 1.01762 1.21509 0.94024 1.06862 0.86292 1.98412 1.77718 1.96408 1.30256 0.92319 0.94201 0.94352 0.93705 0.93715 0.74590 0.87337 0.87315 0.81309 0.79538 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.00 0.17 5.47 84.65 0.46 0.64 16 3 Si 0.96 42.06 27.47 68.60 1.88 43.94 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.23 -9.00 6.54 99.48 0.65 -8.35 16 7 C -0.54 -31.02 9.66 25.60 0.25 -30.77 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 10 C 0.15 6.03 5.61 86.38 0.48 6.52 16 11 N -0.71 -22.31 5.56 -463.07 -2.57 -24.88 16 12 C 0.51 16.99 7.91 87.66 0.69 17.68 16 13 O -0.57 -25.20 16.50 16.01 0.26 -24.94 16 14 C 0.06 1.36 6.54 71.24 0.47 1.83 16 15 O -0.32 -8.92 8.51 -73.94 -0.63 -9.55 16 16 C 0.09 1.82 5.71 22.53 0.13 1.95 16 17 C -0.06 -1.04 6.33 22.41 0.14 -0.90 16 18 Cl -0.06 -1.16 28.50 -2.72 -0.08 -1.24 16 19 C -0.09 -0.87 9.83 22.28 0.22 -0.65 16 20 C -0.08 -0.47 10.04 22.28 0.22 -0.25 16 21 C -0.09 -0.87 9.83 22.28 0.22 -0.65 16 22 C -0.06 -1.04 6.33 22.41 0.14 -0.90 16 23 Cl -0.06 -1.16 28.50 -2.72 -0.08 -1.24 16 24 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 25 H 0.04 1.64 7.20 -2.38 -0.02 1.62 16 26 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.42 9.67 8.47 -92.71 -0.79 8.88 16 30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -78.95 333.45 2.95 -76.01 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.30 Total: 7.17 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 3.55 Total: -5.91 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.27 Total: -84.25 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.37 Total: -34.48 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.94 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.16 Total: -2.48 kcal Total: -78.95 2.95 -76.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273048264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.237 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds