Wall clock time and date at job start Tue Mar 31 2020 11:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48503 * 109.46918 * 269.99870 * 3 2 1 5 5 H 1.48500 * 109.47112 * 29.99781 * 3 2 1 6 6 H 1.48503 * 109.47152 * 149.99604 * 3 2 1 7 7 C 1.37884 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99777 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00302 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47332 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00046 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00277 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99809 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47358 * 305.00091 * 14 12 11 16 16 O 1.42903 * 109.47131 * 184.99731 * 14 12 11 17 17 C 1.50707 * 109.47163 * 65.00534 * 14 12 11 18 18 C 1.38213 * 119.98918 * 84.72339 * 17 14 12 19 19 C 1.38363 * 120.01252 * 179.72951 * 18 17 14 20 20 Cl 1.73600 * 120.00435 * 180.27167 * 19 18 17 21 21 C 1.38327 * 119.98608 * 0.52496 * 19 18 17 22 22 C 1.38332 * 119.97340 * 359.74491 * 21 19 18 23 23 Cl 1.73599 * 120.00751 * 180.02562 * 22 21 19 24 24 C 1.38223 * 119.98114 * 264.99722 * 17 14 12 25 25 H 0.96997 * 120.00317 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47405 * 59.99792 * 9 7 2 27 27 H 1.09003 * 109.47087 * 300.00357 * 9 7 2 28 28 H 1.08991 * 109.47248 * 59.99346 * 10 9 7 29 29 H 1.09005 * 109.46399 * 299.99389 * 10 9 7 30 30 H 0.97004 * 119.99665 * 359.97438 * 11 10 9 31 31 H 0.96700 * 114.00311 * 300.00591 * 16 14 12 32 32 H 1.08004 * 119.99496 * 0.02562 * 18 17 14 33 33 H 1.07999 * 120.01129 * 179.77278 * 21 19 18 34 34 H 1.07991 * 119.99598 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4867 -2.6365 0.0022 12 6 6.1605 -3.8036 0.0028 13 8 5.5542 -4.8540 0.0029 14 6 7.6675 -3.8036 0.0034 15 1 8.0312 -3.2144 -0.8384 16 8 8.1439 -5.1458 -0.1133 17 6 8.1693 -3.2028 1.2913 18 6 8.2953 -3.9921 2.4188 19 6 8.7613 -3.4423 3.6000 20 17 8.9262 -4.4355 5.0142 21 6 9.0907 -2.1000 3.6551 22 6 8.9590 -1.3092 2.5277 23 17 9.3728 0.3754 2.5956 24 6 8.4979 -1.8613 1.3457 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1502 -0.8891 29 1 3.6580 -3.1504 0.8909 30 1 5.9716 -1.7964 0.0025 31 1 7.8583 -5.7284 0.6037 32 1 8.0346 -5.0394 2.3767 33 1 9.4509 -1.6696 4.5777 34 1 8.3954 -1.2442 0.4655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273127150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:11 Heat of formation + Delta-G solvation = -107.170610 kcal Electronic energy + Delta-G solvation = -21292.347194 eV Core-core repulsion = 17661.557239 eV Total energy + Delta-G solvation = -3630.789955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63699 -40.18430 -37.95334 -37.82275 -37.15777 -36.51733 -34.85801 -33.11516 -31.87854 -31.76426 -28.63794 -26.41333 -23.99946 -23.51001 -22.64604 -21.68044 -19.28952 -19.06338 -18.76538 -17.62540 -17.21206 -16.76047 -16.44657 -16.22651 -16.19936 -15.54916 -15.28821 -15.19231 -14.90635 -14.61669 -14.51748 -13.51646 -13.40359 -13.34712 -13.21918 -13.02947 -12.87401 -12.55664 -12.29484 -12.17977 -12.16635 -12.01927 -11.84195 -11.76559 -11.51106 -10.84878 -10.78404 -10.13896 -9.96435 -9.86801 -8.29649 -6.37055 -0.20410 -0.17195 0.71414 1.16575 1.39643 1.42280 1.43793 1.53097 2.01548 2.28502 2.37133 3.05830 3.16627 3.26918 3.66847 3.79064 3.83258 3.90114 3.99868 4.24464 4.33242 4.39442 4.42491 4.74218 4.83906 4.91934 5.02071 5.09652 5.30076 5.38146 5.40402 5.62695 6.21576 6.30408 6.53890 6.71146 7.12342 7.27769 8.87149 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.003905 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.697813 B = 7168.571497 C = 8278.309054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.013 4.013 10 C 0.143 3.857 11 N -0.707 5.707 12 C 0.482 3.518 13 O -0.575 6.575 14 C 0.152 3.848 15 H 0.169 0.831 16 O -0.535 6.535 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.027 4.027 20 Cl -0.053 7.053 21 C -0.099 4.099 22 C -0.026 4.026 23 Cl -0.049 7.049 24 C -0.090 4.090 25 H 0.268 0.732 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.413 0.587 31 H 0.390 0.610 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.536 -1.815 6.345 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.157 1.157 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.359 5.359 12 C 0.268 3.732 13 O -0.455 6.455 14 C 0.089 3.911 15 H 0.186 0.814 16 O -0.341 6.341 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.054 4.054 20 Cl -0.024 7.024 21 C -0.118 4.118 22 C -0.053 4.053 23 Cl -0.020 7.020 24 C -0.109 4.109 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.250 0.750 31 H 0.242 0.758 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 26.284 -2.184 5.952 27.038 hybrid contribution -0.671 0.660 0.761 1.210 sum 25.613 -1.524 6.713 26.522 Atomic orbital electron populations 1.70074 1.08631 1.28410 1.51984 1.26061 0.95627 1.03805 0.93659 0.85593 0.79794 0.77428 0.79428 1.18829 1.21491 1.15749 1.21256 0.91662 0.93313 1.51560 0.95342 1.19650 0.94373 0.92880 0.98144 1.21064 0.78340 0.98523 1.00110 1.46056 1.07518 1.09023 1.73310 1.21912 0.91744 0.83723 0.75813 1.90719 1.70828 1.32706 1.51267 1.20733 0.87194 0.86020 0.97186 0.81405 1.86621 1.74552 1.19253 1.53717 1.20046 1.00663 0.94105 0.94982 1.21053 0.98257 1.01695 0.90754 1.20700 1.03404 0.91997 0.89309 1.98403 1.96214 1.69075 1.38719 1.21148 0.99855 0.91461 0.99340 1.20749 1.02754 0.86710 0.95067 1.98414 1.91826 1.13117 1.98609 1.21245 0.97065 0.94171 0.98426 0.92364 0.94566 0.94378 0.93466 0.93786 0.74998 0.75845 0.83530 0.82425 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.96 41.26 27.47 68.60 1.88 43.14 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 7 C -0.54 -30.11 9.66 25.60 0.25 -29.86 16 8 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.54 4.15 29.85 0.12 -0.42 16 10 C 0.14 5.52 5.61 86.38 0.48 6.00 16 11 N -0.71 -19.70 5.51 -463.07 -2.55 -22.25 16 12 C 0.48 13.27 7.15 87.66 0.63 13.90 16 13 O -0.58 -21.17 16.32 15.96 0.26 -20.91 16 14 C 0.15 2.75 3.62 29.10 0.11 2.85 16 15 H 0.17 2.03 8.05 -2.39 -0.02 2.02 16 16 O -0.54 -10.73 12.79 -129.99 -1.66 -12.39 16 17 C -0.10 -1.57 4.95 -19.87 -0.10 -1.67 16 18 C -0.10 -1.69 9.11 22.29 0.20 -1.48 16 19 C -0.03 -0.46 6.32 22.32 0.14 -0.32 16 20 Cl -0.05 -0.88 28.96 -2.72 -0.08 -0.96 16 21 C -0.10 -1.54 9.62 22.31 0.21 -1.33 16 22 C -0.03 -0.40 6.32 22.32 0.14 -0.26 16 23 Cl -0.05 -0.74 28.96 -2.72 -0.08 -0.82 16 24 C -0.09 -1.27 9.30 22.30 0.21 -1.07 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.04 1.45 7.20 -2.38 -0.02 1.43 16 27 H 0.04 1.48 7.57 -2.39 -0.02 1.47 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.41 8.63 8.30 -92.71 -0.77 7.86 16 31 H 0.39 6.57 7.14 -74.06 -0.53 6.04 16 32 H 0.15 2.23 6.62 -2.91 -0.02 2.21 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.17 1.50 8.06 -2.92 -0.02 1.48 16 Total: -1.00 -71.74 329.59 0.75 -70.99 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -0.19 Total: 14.41 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 2.86 Total: -12.86 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.25 Total: -80.60 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.40 Total: -33.30 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.16 Total: -1.78 kcal Total: -71.74 0.75 -70.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273127150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.178 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds