Wall clock time and date at job start Tue Mar 31 2020 11:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47038 * 2 1 4 4 N 1.46497 * 109.46819 * 239.99864 * 2 1 3 5 5 C 1.34787 * 119.99836 * 135.99258 * 4 2 1 6 6 O 1.21685 * 119.99662 * 0.02562 * 5 4 2 7 7 C 1.46373 * 119.99965 * 179.97438 * 5 4 2 8 8 H 1.08007 * 120.00031 * 0.02562 * 7 5 4 9 9 C 1.40046 * 119.99905 * 179.72024 * 7 5 4 10 10 N 1.30677 * 119.99920 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99944 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46669 * 90.00755 * 11 9 7 13 13 H 1.48496 * 109.47220 * 210.00299 * 11 9 7 14 14 H 1.48497 * 109.47578 * 330.00725 * 11 9 7 15 15 C 1.53005 * 109.47221 * 120.00261 * 2 1 3 16 16 H 1.08999 * 109.46495 * 302.28574 * 15 2 1 17 17 O 1.42893 * 109.47235 * 62.28258 * 15 2 1 18 18 C 1.50699 * 109.46896 * 182.28748 * 15 2 1 19 19 C 1.38332 * 120.01150 * 280.11613 * 18 15 2 20 20 Cl 1.73605 * 120.00538 * 359.97438 * 19 18 15 21 21 C 1.38362 * 119.98543 * 179.79579 * 19 18 15 22 22 C 1.38219 * 120.01248 * 0.45965 * 21 19 18 23 23 C 1.38223 * 120.02557 * 359.79778 * 22 21 19 24 24 C 1.38328 * 120.01338 * 100.39638 * 18 15 2 25 25 Cl 1.73601 * 120.00805 * 359.97438 * 24 18 15 26 26 H 1.08998 * 109.46617 * 299.99628 * 1 2 3 27 27 H 1.08991 * 109.46937 * 60.00266 * 1 2 3 28 28 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 29 29 H 0.97003 * 120.00506 * 315.99160 * 4 2 1 30 30 H 0.97000 * 119.99459 * 179.97438 * 10 9 7 31 31 H 0.96705 * 114.00444 * 26.46906 * 17 15 2 32 32 H 1.07999 * 119.99039 * 180.20823 * 21 19 18 33 33 H 1.07998 * 119.98466 * 179.76602 * 22 21 19 34 34 H 1.08000 * 119.98956 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 3.0345 -0.1661 -1.9096 6 8 3.5466 0.8809 -1.5598 7 6 3.5227 -0.8564 -3.1044 8 1 3.0684 -1.7859 -3.4146 9 6 4.5747 -0.3084 -3.8490 10 7 5.1207 0.8190 -3.4767 11 14 5.1982 -1.1897 -5.3734 12 1 4.4417 -0.7190 -6.5615 13 1 6.6423 -0.8973 -5.5584 14 1 5.0063 -2.6534 -5.2124 15 6 2.0401 -0.7213 1.2492 16 1 1.6436 -0.2317 2.1387 17 8 1.6081 -2.0831 1.2227 18 6 3.5460 -0.6724 1.2778 19 6 4.2817 -1.5548 0.5074 20 17 3.4704 -2.7194 -0.4922 21 6 5.6643 -1.5066 0.5309 22 6 6.3104 -0.5832 1.3311 23 6 5.5758 0.2952 2.1052 24 6 4.1932 0.2512 2.0789 25 17 3.2708 1.3546 3.0512 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6103 -1.5254 -1.4748 30 1 5.8495 1.1983 -3.9923 31 1 1.4537 -2.4296 0.3331 32 1 6.2388 -2.1933 -0.0732 33 1 7.3896 -0.5485 1.3520 34 1 6.0813 1.0168 2.7300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275007685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:04 Heat of formation + Delta-G solvation = -80.866932 kcal Electronic energy + Delta-G solvation = -23481.876071 eV Core-core repulsion = 19852.226729 eV Total energy + Delta-G solvation = -3629.649342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 5.77 seconds Orbital eigenvalues (eV) -41.15519 -39.38437 -37.97977 -37.64842 -37.10090 -35.05566 -34.28422 -32.63143 -31.51875 -31.29166 -28.06429 -27.07658 -23.77946 -23.44923 -22.52097 -21.09029 -19.37707 -18.54446 -17.79450 -17.53662 -17.19861 -16.79612 -16.12712 -15.75900 -15.33291 -15.21015 -15.04426 -14.63794 -14.22017 -14.14012 -13.51389 -13.47125 -13.24297 -13.05019 -12.84071 -12.74925 -12.63716 -12.56166 -12.44473 -12.32367 -12.04445 -11.86877 -11.80443 -11.75219 -10.83629 -10.81019 -9.86393 -9.66161 -9.60720 -9.07711 -8.16788 -6.66902 0.09911 0.16881 0.90967 1.40056 1.40852 1.41758 1.54289 2.27614 2.51084 2.61512 3.05668 3.46725 3.58468 3.70646 3.88751 3.93061 4.10992 4.28976 4.36734 4.40360 4.50497 4.58370 4.69780 4.88446 5.04845 5.11698 5.23975 5.25704 5.27068 5.43228 5.67619 6.02558 6.27710 6.37149 6.60213 7.01967 7.65334 8.64271 8.83603 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.006690 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.048080 B = 4184.427469 C = 4624.970434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.115 3.885 3 H 0.066 0.934 4 N -0.749 5.749 5 C 0.562 3.438 6 O -0.616 6.616 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.041 3.959 10 N -0.814 5.814 11 Si 0.972 3.028 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.253 1.253 15 C 0.137 3.863 16 H 0.116 0.884 17 O -0.555 6.555 18 C -0.100 4.100 19 C 0.001 3.999 20 Cl -0.043 7.043 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.116 4.116 24 C -0.031 4.031 25 Cl -0.056 7.056 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.388 0.612 30 H 0.268 0.732 31 H 0.375 0.625 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 -5.186 9.402 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 H 0.085 0.915 4 N -0.405 5.405 5 C 0.366 3.634 6 O -0.502 6.502 7 C -0.588 4.588 8 H 0.093 0.907 9 C -0.174 4.174 10 N -0.444 5.444 11 Si 0.793 3.207 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.177 1.177 15 C 0.076 3.924 16 H 0.133 0.867 17 O -0.365 6.365 18 C -0.102 4.102 19 C -0.026 4.026 20 Cl -0.014 7.014 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.135 4.135 24 C -0.058 4.058 25 Cl -0.027 7.027 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.222 0.778 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.158 0.842 33 H 0.185 0.815 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.853 -4.240 10.256 11.251 hybrid contribution 0.084 -0.449 -1.619 1.682 sum -1.769 -4.690 8.637 9.986 Atomic orbital electron populations 1.21999 0.92044 1.03442 1.03023 1.21297 0.95498 0.97367 0.85008 0.91526 1.46130 1.38909 1.27310 1.28172 1.18173 0.78029 0.83947 0.83277 1.90576 1.60451 1.26579 1.72574 1.21138 1.18680 1.09052 1.09895 0.90742 1.26591 0.95499 0.94638 1.00714 1.70178 1.19654 1.17516 1.37032 0.85392 0.77592 0.79721 0.77974 1.19303 1.20205 1.17668 1.21305 0.87328 0.83927 0.99805 0.86652 1.86523 1.88820 1.26024 1.35095 1.20156 0.98290 0.95291 0.96439 1.20556 0.92862 0.94435 0.94749 1.98268 1.79048 1.56638 1.67462 1.21363 0.92503 1.00670 0.99579 1.21339 1.01659 0.93714 0.94813 1.21343 0.91228 1.00214 1.00704 1.20699 0.92833 0.94678 0.97638 1.98319 1.73981 1.61361 1.69008 0.89957 0.92262 0.90724 0.77759 0.92228 0.77280 0.84233 0.81491 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.36 71.98 0.67 -3.40 16 2 C 0.12 4.21 2.56 45.00 0.12 4.32 16 3 H 0.07 2.95 7.06 -2.39 -0.02 2.93 16 4 N -0.75 -30.84 2.51 -446.80 -1.12 -31.96 16 5 C 0.56 29.47 5.32 86.36 0.46 29.93 16 6 O -0.62 -37.81 14.42 -4.30 -0.06 -37.87 16 7 C -0.55 -29.05 8.78 24.83 0.22 -28.83 16 8 H 0.07 3.63 7.85 -2.91 -0.02 3.61 16 9 C 0.04 2.18 5.50 85.30 0.47 2.65 16 10 N -0.81 -47.53 11.83 21.84 0.26 -47.27 16 11 Si 0.97 40.16 29.56 68.60 2.03 42.19 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 15 C 0.14 4.69 2.82 29.85 0.08 4.77 16 16 H 0.12 3.63 6.51 -2.39 -0.02 3.62 16 17 O -0.55 -17.94 11.64 -148.98 -1.73 -19.68 16 18 C -0.10 -3.78 4.74 -19.82 -0.09 -3.87 16 19 C 0.00 0.04 4.95 22.32 0.11 0.15 16 20 Cl -0.04 -1.57 20.07 -2.72 -0.05 -1.63 16 21 C -0.12 -4.44 9.83 22.29 0.22 -4.22 16 22 C -0.10 -3.04 10.04 22.26 0.22 -2.81 16 23 C -0.12 -3.66 9.83 22.29 0.22 -3.44 16 24 C -0.03 -1.10 6.31 22.32 0.14 -0.96 16 25 Cl -0.06 -1.67 27.13 -2.72 -0.07 -1.74 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.79 7.59 -2.39 -0.02 1.77 16 29 H 0.39 14.21 6.83 -92.71 -0.63 13.58 16 30 H 0.27 14.47 8.29 -92.71 -0.77 13.70 16 31 H 0.37 11.37 5.07 -74.05 -0.38 10.99 16 32 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -69.36 308.18 2.24 -67.12 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.16 Total: 36.56 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 2.84 Total: -5.72 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -0.86 Total: -79.23 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.80 Total: -57.55 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.13 Total: -3.37 kcal Total: -69.36 2.24 -67.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275007685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.748 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.77 seconds