Wall clock time and date at job start Tue Mar 31 2020 11:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46914 * 2 1 4 4 N 1.46491 * 109.47251 * 120.00149 * 2 1 3 5 5 C 1.34773 * 120.00495 * 277.11824 * 4 2 1 6 6 O 1.21690 * 119.99755 * 359.97438 * 5 4 2 7 7 C 1.46376 * 120.00669 * 180.02562 * 5 4 2 8 8 H 1.07999 * 119.99507 * 0.51587 * 7 5 4 9 9 C 1.40045 * 120.00088 * 180.51614 * 7 5 4 10 10 N 1.30671 * 120.00112 * 0.62613 * 9 7 5 11 11 Si 1.86805 * 119.99818 * 180.62870 * 9 7 5 12 12 H 1.48499 * 109.47288 * 94.74257 * 11 9 7 13 13 H 1.48503 * 109.47083 * 214.74244 * 11 9 7 14 14 H 1.48501 * 109.46840 * 334.73900 * 11 9 7 15 15 C 1.53007 * 109.46819 * 240.00198 * 2 1 3 16 16 H 1.09002 * 109.46990 * 57.25491 * 15 2 1 17 17 O 1.42900 * 109.47083 * 297.25517 * 15 2 1 18 18 C 1.50700 * 109.46985 * 177.25261 * 15 2 1 19 19 C 1.38325 * 120.01334 * 277.65384 * 18 15 2 20 20 Cl 1.73593 * 120.01017 * 359.97438 * 19 18 15 21 21 C 1.38366 * 119.98315 * 179.70212 * 19 18 15 22 22 C 1.38216 * 120.01233 * 0.58857 * 21 19 18 23 23 C 1.38219 * 120.02786 * 359.68114 * 22 21 19 24 24 C 1.38326 * 120.00863 * 97.92073 * 18 15 2 25 25 Cl 1.73601 * 120.01186 * 359.97438 * 24 18 15 26 26 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46730 * 299.99404 * 1 2 3 28 28 H 1.08995 * 109.47811 * 59.99860 * 1 2 3 29 29 H 0.97007 * 119.99873 * 97.11741 * 4 2 1 30 30 H 0.97001 * 120.00023 * 180.02562 * 10 9 7 31 31 H 0.96698 * 113.99929 * 325.22618 * 17 15 2 32 32 H 1.08004 * 119.99037 * 180.31864 * 21 19 18 33 33 H 1.08005 * 119.98708 * 179.70468 * 22 21 19 34 34 H 1.08004 * 119.99623 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1067 -0.0295 2.3672 6 8 1.7812 1.1413 2.4309 7 6 2.5952 -0.7193 3.5622 8 1 2.8927 -1.7559 3.5035 9 6 2.6767 -0.0353 4.7815 10 7 2.3051 1.2153 4.8551 11 14 3.3166 -0.9107 6.3026 12 1 4.7692 -0.6419 6.4541 13 1 2.5936 -0.4136 7.5007 14 1 3.0956 -2.3724 6.1621 15 6 2.0400 -0.7212 -1.2493 16 1 1.6370 -0.2366 -2.1386 17 8 1.6170 -2.0859 -1.2175 18 6 3.5454 -0.6626 -1.2839 19 6 4.1829 0.4638 -1.7722 20 17 3.2490 1.8099 -2.3459 21 6 5.5652 0.5194 -1.7979 22 6 6.3089 -0.5549 -1.3471 23 6 5.6724 -1.6828 -0.8643 24 6 4.2902 -1.7372 -0.8325 25 17 3.4910 -3.1537 -0.2254 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 2.2782 -1.6238 1.1452 30 1 2.3619 1.6893 5.6996 31 1 1.5904 -2.4688 -0.3300 32 1 6.0631 1.4009 -2.1743 33 1 7.3879 -0.5129 -1.3718 34 1 6.2540 -2.5222 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275008824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:12 Heat of formation + Delta-G solvation = -86.431090 kcal Electronic energy + Delta-G solvation = -22779.349827 eV Core-core repulsion = 19149.459205 eV Total energy + Delta-G solvation = -3629.890622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30620 -39.60692 -38.22490 -37.79444 -37.32155 -35.15713 -34.39271 -32.75053 -31.67046 -31.41037 -28.20760 -27.21508 -23.88043 -23.66668 -22.70413 -21.11329 -19.78223 -18.67712 -17.86113 -17.65074 -17.22540 -16.75484 -16.24923 -15.63720 -15.43049 -15.34931 -15.32285 -14.80593 -14.61873 -14.28676 -13.63343 -13.54052 -13.36843 -13.30329 -13.01008 -12.86053 -12.73281 -12.69037 -12.62245 -12.52807 -12.22301 -12.00138 -11.91107 -11.70003 -10.93206 -10.68956 -9.89500 -9.80222 -9.75156 -9.52769 -8.28456 -6.84839 -0.04297 -0.00493 0.77554 1.20167 1.39212 1.40090 1.55708 2.23307 2.38269 2.48422 2.86066 3.29716 3.35659 3.59717 3.72416 3.83214 3.92858 4.20984 4.30011 4.32022 4.37409 4.50140 4.57622 4.76100 4.94957 5.04319 5.09127 5.17686 5.25094 5.31983 5.57201 5.85705 6.10963 6.23167 6.41970 6.87636 7.48026 8.49723 8.67973 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.005552 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.197548 B = 5042.207841 C = 5368.357259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 H 0.064 0.936 4 N -0.751 5.751 5 C 0.547 3.453 6 O -0.623 6.623 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.033 3.967 10 N -0.818 5.818 11 Si 0.991 3.009 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.249 1.249 15 C 0.146 3.854 16 H 0.128 0.872 17 O -0.554 6.554 18 C -0.111 4.111 19 C -0.036 4.036 20 Cl -0.059 7.059 21 C -0.108 4.108 22 C -0.089 4.089 23 C -0.108 4.108 24 C -0.026 4.026 25 Cl -0.046 7.046 26 H 0.066 0.934 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.384 0.616 30 H 0.274 0.726 31 H 0.375 0.625 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.970 -6.787 -13.573 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.082 0.918 4 N -0.410 5.410 5 C 0.351 3.649 6 O -0.509 6.509 7 C -0.608 4.608 8 H 0.100 0.900 9 C -0.183 4.183 10 N -0.447 5.447 11 Si 0.810 3.190 12 H -0.187 1.187 13 H -0.197 1.197 14 H -0.172 1.172 15 C 0.086 3.914 16 H 0.145 0.855 17 O -0.367 6.367 18 C -0.113 4.113 19 C -0.063 4.063 20 Cl -0.030 7.030 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.052 4.052 25 Cl -0.017 7.017 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.221 0.779 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.181 0.819 33 H 0.199 0.801 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.492 -5.720 -14.071 16.936 hybrid contribution -0.144 -0.391 1.320 1.384 sum 7.348 -6.111 -12.751 15.935 Atomic orbital electron populations 1.22056 0.94766 1.02375 1.01743 1.21280 0.94817 0.97311 0.85035 0.91755 1.46049 1.72022 1.14330 1.08580 1.18465 0.77581 0.85879 0.82991 1.90557 1.55773 1.18917 1.85677 1.21359 1.46800 0.99255 0.93388 0.90007 1.26874 0.92866 0.95060 1.03474 1.70179 1.36052 1.11267 1.27216 0.85110 0.78743 0.79470 0.75666 1.18662 1.19744 1.17224 1.21084 0.88072 0.83729 0.98494 0.85505 1.86665 1.89789 1.24277 1.35929 1.20192 0.97727 0.93287 1.00064 1.20775 0.93208 0.89284 1.03032 1.98370 1.73523 1.44003 1.87072 1.21522 0.90578 1.01072 0.99437 1.21530 1.02246 0.90903 0.95999 1.21543 0.91302 1.00856 0.98918 1.20730 0.93592 0.89008 1.01919 1.98279 1.79345 1.38174 1.85859 0.91550 0.94749 0.89983 0.77931 0.91637 0.77013 0.81886 0.80123 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 9.34 71.98 0.67 -4.91 16 2 C 0.12 4.83 2.26 45.00 0.10 4.93 16 3 H 0.06 2.92 7.07 -2.39 -0.02 2.90 16 4 N -0.75 -34.10 4.54 -446.84 -2.03 -36.13 16 5 C 0.55 31.52 7.68 86.36 0.66 32.18 16 6 O -0.62 -41.25 14.70 -4.32 -0.06 -41.31 16 7 C -0.57 -32.34 9.54 24.83 0.24 -32.10 16 8 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 9 C 0.03 1.82 5.50 85.30 0.47 2.28 16 10 N -0.82 -49.78 11.83 21.83 0.26 -49.52 16 11 Si 0.99 40.80 29.56 68.60 2.03 42.83 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 13 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 14 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 15 C 0.15 4.73 2.45 29.85 0.07 4.80 16 16 H 0.13 3.73 7.25 -2.39 -0.02 3.72 16 17 O -0.55 -17.43 10.71 -148.98 -1.60 -19.03 16 18 C -0.11 -3.45 4.77 -19.82 -0.09 -3.55 16 19 C -0.04 -1.02 6.31 22.32 0.14 -0.88 16 20 Cl -0.06 -1.62 26.87 -2.72 -0.07 -1.69 16 21 C -0.11 -2.41 9.83 22.30 0.22 -2.19 16 22 C -0.09 -1.69 10.04 22.26 0.22 -1.47 16 23 C -0.11 -2.44 9.83 22.30 0.22 -2.22 16 24 C -0.03 -0.74 6.12 22.32 0.14 -0.60 16 25 Cl -0.05 -1.27 22.19 -2.72 -0.06 -1.33 16 26 H 0.07 2.24 7.76 -2.39 -0.02 2.22 16 27 H 0.03 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.38 15.60 4.87 -92.70 -0.45 15.15 16 30 H 0.27 15.11 8.29 -92.71 -0.77 14.35 16 31 H 0.37 11.80 4.76 -74.06 -0.35 11.45 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -75.03 313.66 1.89 -73.14 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.36 Total: 36.78 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 3.06 Total: -3.73 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -1.77 Total: -85.65 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.66 Total: -60.34 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.13 Total: -3.02 kcal Total: -75.03 1.89 -73.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275008824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.293 kcal (2) G-P(sol) polarization free energy of solvation -75.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds