Wall clock time and date at job start Tue Mar 31 2020 11:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 N 1.46501 * 109.47402 * 240.00278 * 2 1 3 5 5 C 1.34774 * 120.00252 * 84.99999 * 4 2 1 6 6 O 1.21693 * 119.99705 * 359.97438 * 5 4 2 7 7 C 1.46370 * 119.99944 * 180.02562 * 5 4 2 8 8 H 1.07994 * 120.00456 * 0.02562 * 7 5 4 9 9 C 1.40056 * 119.99739 * 179.97438 * 7 5 4 10 10 N 1.30665 * 119.99990 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 119.99671 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47348 * 60.00662 * 11 9 7 13 13 H 1.48508 * 109.46973 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47260 * 299.99985 * 11 9 7 15 15 C 1.52999 * 109.47219 * 120.00055 * 2 1 3 16 16 H 1.09000 * 109.47339 * 175.55162 * 15 2 1 17 17 O 1.42904 * 109.47056 * 55.54983 * 15 2 1 18 18 C 1.50703 * 109.47111 * 295.55154 * 15 2 1 19 19 C 1.38339 * 120.01201 * 81.61137 * 18 15 2 20 20 Cl 1.73606 * 120.00462 * 359.97438 * 19 18 15 21 21 C 1.38356 * 119.98620 * 179.97438 * 19 18 15 22 22 C 1.38224 * 120.01204 * 0.27660 * 21 19 18 23 23 C 1.38217 * 120.02379 * 359.44560 * 22 21 19 24 24 C 1.38329 * 120.01797 * 261.58744 * 18 15 2 25 25 Cl 1.73599 * 120.00107 * 0.02562 * 24 18 15 26 26 H 1.09000 * 109.46934 * 58.27145 * 1 2 3 27 27 H 1.09002 * 109.46934 * 178.26401 * 1 2 3 28 28 H 1.08997 * 109.47175 * 298.27175 * 1 2 3 29 29 H 0.97005 * 119.99494 * 264.99742 * 4 2 1 30 30 H 0.97002 * 120.00335 * 180.02562 * 10 9 7 31 31 H 0.96699 * 114.00041 * 322.25112 * 17 15 2 32 32 H 1.07998 * 119.99282 * 180.02562 * 21 19 18 33 33 H 1.08001 * 119.97933 * 179.70286 * 22 21 19 34 34 H 1.08004 * 119.98976 * 180.25815 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8572 1.1624 -2.4118 7 6 2.6346 -0.7083 -3.5523 8 1 2.8906 -1.7563 -3.5041 9 6 2.7679 -0.0097 -4.7589 10 7 2.4575 1.2582 -4.8174 11 14 3.3906 -0.8903 -6.2840 12 1 2.4747 -2.0105 -6.6175 13 1 3.4406 0.0640 -7.4208 14 1 4.7522 -1.4240 -6.0262 15 6 2.0400 -0.7213 1.2492 16 1 3.1271 -0.7908 1.2103 17 8 1.4802 -2.0350 1.3026 18 6 1.6296 0.0499 2.4772 19 6 0.3546 -0.0979 2.9932 20 17 -0.7734 -1.1713 2.2257 21 6 -0.0214 0.6100 4.1209 22 6 0.8748 1.4690 4.7287 23 6 2.1507 1.6127 4.2170 24 6 2.5279 0.9055 3.0894 25 17 4.1281 1.0916 2.4426 26 1 -0.3633 0.5404 -0.8741 27 1 -0.3633 -1.0272 -0.0311 28 1 -0.3633 0.4867 0.9050 29 1 2.2491 -1.6317 -1.1526 30 1 2.5495 1.7420 -5.6531 31 1 0.5620 -2.0838 1.0034 32 1 -1.0166 0.4944 4.5240 33 1 0.5792 2.0250 5.6062 34 1 2.8519 2.2810 4.6948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275008831.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:16 Heat of formation + Delta-G solvation = -83.778761 kcal Electronic energy + Delta-G solvation = -22299.982631 eV Core-core repulsion = 18670.207023 eV Total energy + Delta-G solvation = -3629.775608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40290 -39.64380 -38.34174 -37.81362 -37.37070 -35.19917 -34.41800 -32.93702 -31.72178 -31.02225 -28.29014 -27.53972 -24.05156 -23.79111 -22.27114 -21.25182 -19.53617 -18.83104 -17.96723 -17.50247 -17.41612 -16.64160 -16.48416 -15.86525 -15.63951 -15.45382 -15.38853 -14.82940 -14.57656 -14.35906 -14.05390 -13.53882 -13.26967 -13.11396 -13.05168 -12.82391 -12.73609 -12.62638 -12.60584 -12.43548 -12.06612 -12.01212 -11.96708 -11.29843 -11.05984 -10.91903 -9.97857 -9.84100 -9.78708 -9.50792 -8.29188 -6.86003 -0.08794 -0.07961 0.73152 1.16055 1.39448 1.42910 1.54288 2.23178 2.33406 2.47036 2.91013 3.24401 3.52529 3.59337 3.65063 3.74653 3.90409 4.11953 4.17353 4.21174 4.33682 4.45561 4.56688 4.68598 4.87453 5.03413 5.05075 5.15647 5.23249 5.31494 5.54804 5.86963 6.17561 6.24820 6.46837 6.86511 7.51737 8.48647 8.66858 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.004150 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.669908 B = 6746.023115 C = 7510.741827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.054 0.946 4 N -0.747 5.747 5 C 0.543 3.457 6 O -0.626 6.626 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.031 3.969 10 N -0.820 5.820 11 Si 0.996 3.004 12 H -0.255 1.255 13 H -0.273 1.273 14 H -0.256 1.256 15 C 0.146 3.854 16 H 0.107 0.893 17 O -0.559 6.559 18 C -0.112 4.112 19 C -0.027 4.027 20 Cl -0.047 7.047 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.102 4.102 24 C -0.035 4.035 25 Cl -0.065 7.065 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.274 0.726 31 H 0.377 0.623 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -2.579 20.936 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 H 0.072 0.928 4 N -0.402 5.402 5 C 0.347 3.653 6 O -0.513 6.513 7 C -0.611 4.611 8 H 0.103 0.897 9 C -0.184 4.184 10 N -0.449 5.449 11 Si 0.816 3.184 12 H -0.179 1.179 13 H -0.198 1.198 14 H -0.180 1.180 15 C 0.086 3.914 16 H 0.125 0.875 17 O -0.374 6.374 18 C -0.115 4.115 19 C -0.054 4.054 20 Cl -0.018 7.018 21 C -0.119 4.119 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.062 4.062 25 Cl -0.036 7.036 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.234 0.766 32 H 0.188 0.812 33 H 0.204 0.796 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.690 -1.792 20.893 21.292 hybrid contribution 0.003 -0.463 -1.355 1.432 sum -3.687 -2.255 19.538 20.010 Atomic orbital electron populations 1.22745 0.95365 1.01876 1.01984 1.21092 0.94551 0.96600 0.85267 0.92792 1.45839 1.72213 1.13352 1.08767 1.18542 0.77547 0.86035 0.83171 1.90551 1.56853 1.18360 1.85562 1.21389 1.47412 0.98215 0.94079 0.89692 1.26928 0.92770 0.95128 1.03584 1.70174 1.36479 1.10460 1.27806 0.85096 0.79674 0.78398 0.75275 1.17858 1.19801 1.17980 1.20949 0.98946 0.82331 0.89189 0.87523 1.86585 1.34655 1.27338 1.88804 1.20072 0.93457 0.99212 0.98723 1.20727 0.89901 0.97455 0.97325 1.98302 1.59519 1.64115 1.79861 1.21574 1.02510 0.95043 0.92753 1.21594 0.91085 0.96723 1.00486 1.21553 0.98575 0.98492 0.93426 1.20882 0.87111 1.00607 0.97642 1.98402 1.22619 1.96303 1.86254 0.95035 0.91324 0.89818 0.77220 0.91583 0.76563 0.81235 0.79635 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.94 7.50 71.98 0.54 -5.40 16 2 C 0.13 5.34 2.43 44.99 0.11 5.45 16 3 H 0.05 2.56 7.58 -2.39 -0.02 2.54 16 4 N -0.75 -35.16 5.05 -446.83 -2.26 -37.41 16 5 C 0.54 32.15 7.71 86.36 0.67 32.82 16 6 O -0.63 -42.40 14.68 -4.33 -0.06 -42.46 16 7 C -0.57 -33.30 9.54 24.83 0.24 -33.07 16 8 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.03 1.77 5.50 85.31 0.47 2.24 16 10 N -0.82 -50.81 11.83 21.84 0.26 -50.55 16 11 Si 1.00 41.73 29.56 68.60 2.03 43.76 16 12 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 15 C 0.15 4.86 2.91 29.85 0.09 4.95 16 16 H 0.11 3.76 6.57 -2.39 -0.02 3.74 16 17 O -0.56 -17.86 12.15 -148.98 -1.81 -19.67 16 18 C -0.11 -3.13 4.79 -19.82 -0.09 -3.23 16 19 C -0.03 -0.63 5.08 22.32 0.11 -0.52 16 20 Cl -0.05 -1.07 20.43 -2.72 -0.06 -1.13 16 21 C -0.10 -1.57 9.83 22.29 0.22 -1.35 16 22 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16 23 C -0.10 -1.74 9.83 22.29 0.22 -1.52 16 24 C -0.04 -0.89 6.31 22.32 0.14 -0.75 16 25 Cl -0.06 -1.81 27.16 -2.72 -0.07 -1.88 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 2.24 5.42 -2.39 -0.01 2.23 16 28 H 0.08 2.63 4.80 -2.39 -0.01 2.62 16 29 H 0.39 16.75 8.34 -92.70 -0.77 15.98 16 30 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 31 H 0.38 11.12 4.03 -74.06 -0.30 10.82 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -77.99 308.86 1.06 -76.93 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.11 Total: 33.59 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 2.93 Total: -1.17 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.00 Total: -87.96 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -1.87 Total: -62.14 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.13 Total: -3.01 kcal Total: -77.99 1.06 -76.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275008831.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.850 kcal (2) G-P(sol) polarization free energy of solvation -77.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds