Wall clock time and date at job start Tue Mar 31 2020 12:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48497 * 109.47442 * 270.00047 * 3 2 1 5 5 H 1.48499 * 109.47104 * 30.00455 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99916 * 3 2 1 7 7 C 1.37881 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46920 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99901 * 179.97438 * 11 10 9 13 13 O 1.21595 * 120.00359 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99915 * 179.97438 * 12 11 10 15 15 C 1.40189 * 120.00287 * 175.38062 * 14 12 11 16 16 C 1.38829 * 119.98895 * 214.82181 * 15 14 12 17 17 C 1.38191 * 120.01021 * 179.76592 * 16 15 14 18 18 Cl 1.73603 * 120.00745 * 180.25079 * 17 16 15 19 19 C 1.38931 * 119.98639 * 0.53219 * 17 16 15 20 20 N 1.40078 * 120.01150 * 179.70023 * 19 17 16 21 21 C 1.38932 * 119.97780 * 359.72116 * 19 17 16 22 22 Cl 1.73600 * 120.00423 * 179.97438 * 21 19 17 23 23 C 1.38183 * 119.98860 * 0.02562 * 21 19 17 24 24 H 0.96995 * 120.00214 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47526 * 60.00021 * 9 7 2 26 26 H 1.09000 * 109.46960 * 299.99085 * 9 7 2 27 27 H 1.09004 * 109.47290 * 59.99467 * 10 9 7 28 28 H 1.09005 * 109.46795 * 299.99946 * 10 9 7 29 29 H 0.96998 * 119.99715 * 0.27424 * 11 10 9 30 30 H 0.97002 * 119.99672 * 355.38292 * 14 12 11 31 31 H 1.07999 * 119.99780 * 0.02562 * 16 15 14 32 32 H 0.96999 * 119.99867 * 180.02562 * 20 19 17 33 33 H 0.97002 * 119.99919 * 0.02562 * 20 19 17 34 34 H 1.07997 * 119.99959 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0007 13 8 3.4029 -6.0979 -0.0006 14 7 1.5131 -7.2652 0.0018 15 6 2.2105 -8.4773 -0.0964 16 6 1.6537 -9.5442 -0.7885 17 6 2.3429 -10.7377 -0.8897 18 17 1.6494 -12.0697 -1.7607 19 6 3.5884 -10.8733 -0.2892 20 7 4.2847 -12.0849 -0.3862 21 6 4.1429 -9.8070 0.4077 22 17 5.6988 -9.9760 1.1588 23 6 3.4552 -8.6123 0.5039 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.5430 -4.9309 -0.0025 30 1 0.5455 -7.2666 0.0705 31 1 0.6835 -9.4401 -1.2515 32 1 5.1541 -12.1795 0.0334 33 1 3.8975 -12.8293 -0.8729 34 1 3.8862 -7.7832 1.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277547728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:12 Heat of formation + Delta-G solvation = -24.719081 kcal Electronic energy + Delta-G solvation = -20669.243105 eV Core-core repulsion = 17074.321268 eV Total energy + Delta-G solvation = -3594.921837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63209 -39.20044 -36.95740 -36.63206 -35.65517 -34.78676 -33.47582 -32.74735 -30.81296 -29.74592 -27.75926 -24.79304 -23.48494 -22.57340 -21.06539 -20.71677 -18.61481 -17.93986 -17.29802 -17.23969 -16.34939 -15.46392 -15.18861 -14.71390 -14.61399 -14.49316 -14.43756 -14.34521 -13.63078 -13.48335 -13.18025 -12.54545 -12.30814 -12.09187 -11.49778 -11.41700 -11.38173 -11.23218 -11.18491 -11.04507 -10.65529 -10.37429 -10.03097 -9.62175 -9.56046 -9.30128 -8.92869 -8.60724 -8.39902 -7.52225 -6.11577 -4.14379 0.81405 1.09033 1.57988 2.13582 2.79590 3.14788 3.28729 3.35066 3.39339 3.42753 3.56086 4.33514 4.48412 4.58958 4.89682 4.95090 5.18716 5.25849 5.45261 5.70341 5.93193 6.07881 6.23108 6.33002 6.67746 6.71565 6.84852 6.94687 7.04228 7.32802 7.51412 7.58673 7.87064 8.14943 8.28331 8.75503 8.91840 9.50686 11.00075 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002405 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.565167 B =11638.573268 C =12653.002922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.138 3.862 11 N -0.730 5.730 12 C 0.697 3.303 13 O -0.580 6.580 14 N -0.688 5.688 15 C 0.142 3.858 16 C -0.087 4.087 17 C -0.089 4.089 18 Cl -0.062 7.062 19 C 0.220 3.780 20 N -0.868 5.868 21 C -0.087 4.087 22 Cl -0.059 7.059 23 C -0.055 4.055 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.396 0.604 30 H 0.408 0.592 31 H 0.142 0.858 32 H 0.403 0.597 33 H 0.402 0.598 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -26.290 -0.313 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.016 3.984 11 N -0.383 5.383 12 C 0.397 3.603 13 O -0.458 6.458 14 N -0.337 5.337 15 C 0.044 3.956 16 C -0.109 4.109 17 C -0.121 4.121 18 Cl -0.034 7.034 19 C 0.112 3.888 20 N -0.410 5.410 21 C -0.119 4.119 22 Cl -0.030 7.030 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.229 0.771 30 H 0.243 0.757 31 H 0.160 0.840 32 H 0.233 0.767 33 H 0.232 0.768 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.760 -26.139 -0.323 26.410 hybrid contribution -0.346 0.500 -0.100 0.617 sum 3.414 -25.638 -0.423 25.868 Atomic orbital electron populations 1.69947 1.06102 1.26920 1.50353 1.24991 0.94893 0.99431 0.94953 0.86507 0.79851 0.82958 0.78220 1.20547 1.21175 1.19695 1.21038 0.93286 0.90298 1.51402 0.92174 1.19332 0.94236 0.91014 0.97892 1.21685 0.95729 0.80022 1.00957 1.45565 1.10098 1.05124 1.77529 1.16054 0.85721 0.80303 0.78173 1.90901 1.11442 1.86064 1.57348 1.42569 1.10035 1.03038 1.78021 1.16832 0.93621 0.85607 0.99534 1.20584 1.01157 0.90917 0.98289 1.19669 0.94615 0.91367 1.06482 1.98345 1.83787 1.46068 1.75189 1.17020 0.90282 0.86976 0.94497 1.42624 1.23498 1.12051 1.62805 1.19922 0.90743 0.94891 1.06373 1.98350 1.26320 1.97594 1.80761 1.21203 0.93670 0.95920 0.96883 0.92822 0.95916 0.95882 0.92449 0.92479 0.77079 0.75681 0.84050 0.76661 0.76759 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.83 5.61 -4.04 -0.02 2.81 16 11 N -0.73 -11.93 5.56 -65.22 -0.36 -12.30 16 12 C 0.70 11.28 8.41 -86.92 -0.73 10.55 16 13 O -0.58 -11.45 13.78 5.28 0.07 -11.37 16 14 N -0.69 -8.19 5.35 -14.18 -0.08 -8.27 16 15 C 0.14 1.71 6.30 -83.59 -0.53 1.18 16 16 C -0.09 -0.87 9.74 -39.38 -0.38 -1.26 16 17 C -0.09 -0.88 6.33 -39.34 -0.25 -1.13 16 18 Cl -0.06 -0.52 27.58 -51.86 -1.43 -1.95 16 19 C 0.22 2.26 6.76 -83.57 -0.56 1.69 16 20 N -0.87 -6.70 9.01 32.50 0.29 -6.40 16 21 C -0.09 -1.02 6.33 -39.34 -0.25 -1.27 16 22 Cl -0.06 -0.63 27.58 -51.86 -1.43 -2.06 16 23 C -0.06 -0.73 8.47 -39.38 -0.33 -1.07 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.40 5.41 8.49 -40.82 -0.35 5.06 16 30 H 0.41 3.43 8.84 -40.82 -0.36 3.07 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.40 2.74 7.50 -40.82 -0.31 2.43 16 33 H 0.40 2.55 7.50 -40.82 -0.31 2.24 16 34 H 0.16 2.46 6.21 -52.49 -0.33 2.14 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -31.19 325.85 -9.22 -40.41 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.30 Total: 7.22 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.61 Total: -1.29 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.59 Total: -51.98 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.86 Total: -4.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.19 -9.22 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277547728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.693 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds