Wall clock time and date at job start Tue Mar 31 2020 12:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99876 * 2 1 4 4 H 1.48497 * 109.47442 * 270.00047 * 3 2 1 5 5 H 1.48499 * 109.47104 * 30.00455 * 3 2 1 6 6 H 1.48500 * 109.47282 * 149.99916 * 3 2 1 7 7 C 1.37881 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46920 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99901 * 179.97438 * 11 10 9 13 13 O 1.21595 * 120.00359 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99915 * 179.97438 * 12 11 10 15 15 C 1.40189 * 120.00287 * 175.38062 * 14 12 11 16 16 C 1.38829 * 119.98895 * 214.82181 * 15 14 12 17 17 C 1.38191 * 120.01021 * 179.76592 * 16 15 14 18 18 Cl 1.73603 * 120.00745 * 180.25079 * 17 16 15 19 19 C 1.38931 * 119.98639 * 0.53219 * 17 16 15 20 20 N 1.40078 * 120.01150 * 179.70023 * 19 17 16 21 21 C 1.38932 * 119.97780 * 359.72116 * 19 17 16 22 22 Cl 1.73600 * 120.00423 * 179.97438 * 21 19 17 23 23 C 1.38183 * 119.98860 * 0.02562 * 21 19 17 24 24 H 0.96995 * 120.00214 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47526 * 60.00021 * 9 7 2 26 26 H 1.09000 * 109.46960 * 299.99085 * 9 7 2 27 27 H 1.09004 * 109.47290 * 59.99467 * 10 9 7 28 28 H 1.09005 * 109.46795 * 299.99946 * 10 9 7 29 29 H 0.96998 * 119.99715 * 0.27424 * 11 10 9 30 30 H 0.97002 * 119.99672 * 355.38292 * 14 12 11 31 31 H 1.07999 * 119.99780 * 0.02562 * 16 15 14 32 32 H 0.96999 * 119.99867 * 180.02562 * 20 19 17 33 33 H 0.97002 * 119.99919 * 0.02562 * 20 19 17 34 34 H 1.07997 * 119.99959 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0007 13 8 3.4029 -6.0979 -0.0006 14 7 1.5131 -7.2652 0.0018 15 6 2.2105 -8.4773 -0.0964 16 6 1.6537 -9.5442 -0.7885 17 6 2.3429 -10.7377 -0.8897 18 17 1.6494 -12.0697 -1.7607 19 6 3.5884 -10.8733 -0.2892 20 7 4.2847 -12.0849 -0.3862 21 6 4.1429 -9.8070 0.4077 22 17 5.6988 -9.9760 1.1588 23 6 3.4552 -8.6123 0.5039 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.5430 -4.9309 -0.0025 30 1 0.5455 -7.2666 0.0705 31 1 0.6835 -9.4401 -1.2515 32 1 5.1541 -12.1795 0.0334 33 1 3.8975 -12.8293 -0.8729 34 1 3.8862 -7.7832 1.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277547728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:11 Heat of formation + Delta-G solvation = -46.172491 kcal Electronic energy + Delta-G solvation = -20670.173395 eV Core-core repulsion = 17074.321268 eV Total energy + Delta-G solvation = -3595.852127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71663 -40.23548 -37.74516 -37.57113 -36.73669 -36.18850 -34.91730 -34.20103 -31.67559 -31.47108 -28.78269 -26.61205 -24.40275 -23.67904 -22.71635 -21.95564 -19.77584 -18.93016 -18.46421 -18.13504 -18.03945 -16.73222 -16.50702 -16.34411 -15.67082 -15.56600 -15.39612 -15.37064 -15.00013 -14.79574 -14.31059 -14.23364 -13.33161 -13.19696 -13.03240 -12.92254 -12.51115 -12.44298 -12.19188 -12.18454 -12.12073 -11.99289 -11.63943 -11.46457 -11.16891 -10.59725 -10.55179 -9.96196 -9.78713 -8.36067 -8.22369 -6.32011 -0.04059 0.20586 0.76557 1.30398 1.43602 1.43732 1.54754 1.65672 2.01018 2.42585 2.54721 2.70824 3.12929 3.25865 3.78745 4.04698 4.08715 4.29120 4.49970 4.55319 4.63504 4.85662 4.89766 5.06936 5.11353 5.31196 5.52171 5.62794 5.71862 5.80884 5.98410 6.19169 6.21795 6.73161 6.81487 7.03062 7.37220 7.50133 8.89465 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002405 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.565167 B =11638.573268 C =12653.002922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.725 5.725 12 C 0.698 3.302 13 O -0.617 6.617 14 N -0.667 5.667 15 C 0.121 3.879 16 C -0.071 4.071 17 C -0.094 4.094 18 Cl -0.044 7.044 19 C 0.226 3.774 20 N -0.856 5.856 21 C -0.100 4.100 22 Cl -0.057 7.057 23 C -0.071 4.071 24 H 0.265 0.735 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.410 0.590 30 H 0.426 0.574 31 H 0.168 0.832 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -27.646 -0.913 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.498 6.498 14 N -0.317 5.317 15 C 0.024 3.976 16 C -0.093 4.093 17 C -0.127 4.127 18 Cl -0.015 7.015 19 C 0.116 3.884 20 N -0.398 5.398 21 C -0.133 4.133 22 Cl -0.028 7.028 23 C -0.093 4.093 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.246 0.754 30 H 0.265 0.735 31 H 0.185 0.815 32 H 0.240 0.760 33 H 0.243 0.757 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.428 -27.571 -0.927 27.799 hybrid contribution -0.254 0.749 0.066 0.793 sum 3.174 -26.823 -0.861 27.024 Atomic orbital electron populations 1.70045 1.07476 1.27952 1.51128 1.25833 0.95766 1.02979 0.94511 0.85483 0.78671 0.78653 0.78481 1.19835 1.20602 1.19100 1.21473 0.93628 0.91933 1.51342 0.92286 1.19132 0.94253 0.91530 0.96506 1.21124 0.94625 0.80735 0.99917 1.45190 1.10636 1.04133 1.77941 1.16094 0.85253 0.81001 0.77791 1.90887 1.13271 1.86724 1.58874 1.42226 1.10804 1.01773 1.76926 1.16924 0.93737 0.85974 1.00970 1.20769 1.01760 0.89919 0.96803 1.19782 0.94517 0.91994 1.06382 1.98356 1.83452 1.45010 1.74668 1.17078 0.90453 0.87210 0.93617 1.42635 1.23508 1.11436 1.62217 1.19925 0.91039 0.95024 1.07271 1.98343 1.26128 1.97565 1.80793 1.21055 0.94640 0.95857 0.97758 0.92575 0.97174 0.97119 0.93478 0.93582 0.75399 0.73500 0.81479 0.76019 0.75717 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.16 6.65 5.61 86.38 0.48 7.13 16 11 N -0.72 -23.60 5.56 -478.51 -2.66 -26.26 16 12 C 0.70 22.53 8.41 179.06 1.51 24.03 16 13 O -0.62 -24.88 13.78 -4.02 -0.06 -24.94 16 14 N -0.67 -15.21 5.35 -317.03 -1.70 -16.91 16 15 C 0.12 2.81 6.30 38.09 0.24 3.05 16 16 C -0.07 -1.25 9.74 22.40 0.22 -1.03 16 17 C -0.09 -1.66 6.33 22.42 0.14 -1.52 16 18 Cl -0.04 -0.61 27.58 -2.72 -0.08 -0.68 16 19 C 0.23 4.27 6.76 38.16 0.26 4.53 16 20 N -0.86 -11.54 9.01 -51.09 -0.46 -12.00 16 21 C -0.10 -2.30 6.33 22.42 0.14 -2.16 16 22 Cl -0.06 -1.21 27.58 -2.72 -0.08 -1.29 16 23 C -0.07 -1.91 8.47 22.40 0.19 -1.72 16 24 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.41 10.94 8.49 -92.71 -0.79 10.15 16 30 H 0.43 6.37 8.84 -92.71 -0.82 5.55 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.41 4.86 7.50 -92.71 -0.70 4.16 16 33 H 0.41 4.21 7.50 -92.71 -0.70 3.52 16 34 H 0.13 4.31 6.21 -2.91 -0.02 4.29 16 Total: -1.00 -67.04 325.85 -0.47 -67.52 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -1.79 Total: 17.84 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.03 Total: 4.78 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.53 Total: -108.48 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.06 Total: -24.94 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.15 Total: -1.97 kcal Total: -67.04 -0.47 -67.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277547728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.344 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds