Wall clock time and date at job start Tue Mar 31 2020 10:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46915 * 2 1 4 4 O 1.21263 * 120.00343 * 0.02562 * 3 2 1 5 5 C 1.47089 * 119.99745 * 179.97438 * 3 2 1 6 6 C 1.39917 * 120.16088 * 0.02562 * 5 3 2 7 7 C 1.37792 * 119.84453 * 179.97438 * 6 5 3 8 8 C 1.38590 * 120.15169 * 359.97438 * 7 6 5 9 9 Cl 1.73602 * 119.83767 * 179.97438 * 8 7 6 10 10 C 1.38546 * 120.32583 * 359.97438 * 8 7 6 11 11 S 1.76198 * 119.92316 * 180.02562 * 10 8 7 12 12 O 1.42097 * 106.40522 * 182.56523 * 11 10 8 13 13 O 1.42108 * 106.40428 * 49.64578 * 11 10 8 14 14 N 1.65597 * 107.22056 * 296.10677 * 11 10 8 15 15 C 1.36940 * 120.00041 * 295.31971 * 14 11 10 16 16 H 1.08000 * 119.99912 * 5.50705 * 15 14 11 17 17 C 1.38812 * 119.99936 * 185.51204 * 15 14 11 18 18 N 1.31612 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99927 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46985 * 59.99302 * 19 17 15 21 21 H 1.48493 * 109.47382 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46769 * 299.99984 * 19 17 15 23 23 C 1.37834 * 120.15474 * 0.27610 * 10 8 7 24 24 H 1.09007 * 109.46861 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47179 * 299.99409 * 1 2 3 26 26 H 1.08993 * 109.47202 * 60.00171 * 1 2 3 27 27 H 1.09005 * 109.46808 * 240.00389 * 2 1 3 28 28 H 1.09003 * 109.47150 * 120.00595 * 2 1 3 29 29 H 1.07999 * 120.08000 * 359.97131 * 6 5 3 30 30 H 1.07991 * 119.92534 * 179.97438 * 7 6 5 31 31 H 0.96999 * 120.00036 * 115.31197 * 14 11 10 32 32 H 0.97001 * 119.99885 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.07718 * 179.72755 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4784 1.6896 0.0006 6 6 4.3906 0.6287 0.0006 7 6 5.7439 0.8879 0.0006 8 6 6.2022 2.1959 0.0000 9 17 7.9089 2.5131 0.0007 10 6 5.3048 3.2515 -0.0010 11 16 5.8990 4.9102 -0.0024 12 8 4.7524 5.7473 0.0577 13 8 6.8656 4.9894 -1.0412 14 7 6.7194 5.1382 1.4179 15 6 6.0511 5.0794 2.6117 16 1 5.0089 4.7968 2.6337 17 6 6.7131 5.3829 3.7934 18 7 7.9832 5.7268 3.7666 19 14 5.8013 5.3033 5.4218 20 1 5.2944 3.9243 5.6384 21 1 6.7253 5.6695 6.5250 22 1 4.6592 6.2521 5.3964 23 6 3.9483 3.0071 0.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 4.0349 -0.3911 0.0006 30 1 6.4491 0.0701 0.0010 31 1 7.6734 5.3134 1.4043 32 1 8.4459 5.9385 4.5924 33 1 3.2500 3.8309 0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280220167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:38 Heat of formation + Delta-G solvation = -116.420188 kcal Electronic energy + Delta-G solvation = -22108.261639 eV Core-core repulsion = 18479.114299 eV Total energy + Delta-G solvation = -3629.147340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.25901 -39.56817 -38.20785 -37.60271 -36.80147 -36.49340 -34.05661 -32.86449 -32.45375 -32.19555 -26.66854 -26.41322 -24.73246 -23.56260 -21.33795 -20.18134 -19.94468 -19.09896 -18.35878 -17.45251 -17.27904 -16.86942 -16.50318 -16.44881 -16.10418 -15.61618 -15.34695 -15.18436 -14.81733 -14.12769 -13.89263 -13.80071 -13.29539 -13.14793 -13.09805 -13.07856 -13.03316 -12.92635 -12.64449 -12.53403 -12.51896 -12.34185 -12.09610 -11.98889 -11.88037 -11.65058 -10.81045 -10.62202 -10.17816 -10.04983 -8.31207 -5.90018 -0.78638 -0.43900 -0.21462 0.78476 1.12313 1.45111 1.49457 1.55700 2.18782 2.34487 2.58639 2.76254 2.88679 3.19746 3.40104 3.68502 3.75685 3.96965 4.10229 4.12555 4.32024 4.35209 4.56117 4.66597 4.76866 4.86829 4.99258 5.04611 5.05206 5.09238 5.36910 5.44586 5.61037 6.45814 6.73557 6.93277 7.31341 8.86806 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.005631 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.779713 B = 4971.474490 C = 5862.822623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.161 4.161 3 C 0.395 3.605 4 O -0.493 6.493 5 C -0.200 4.200 6 C 0.010 3.990 7 C -0.135 4.135 8 C 0.067 3.933 9 Cl -0.046 7.046 10 C -0.689 4.689 11 S 2.661 3.339 12 O -0.996 6.996 13 O -0.991 6.991 14 N -0.963 5.963 15 C -0.317 4.317 16 H 0.098 0.902 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.273 1.273 23 C 0.017 3.983 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.210 0.790 30 H 0.187 0.813 31 H 0.407 0.593 32 H 0.273 0.727 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -18.899 -5.472 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.275 3.725 4 O -0.370 6.370 5 C -0.202 4.202 6 C -0.008 4.008 7 C -0.154 4.154 8 C 0.039 3.961 9 Cl -0.016 7.016 10 C -0.775 4.775 11 S 2.751 3.249 12 O -0.986 6.986 13 O -0.981 6.981 14 N -0.718 5.718 15 C -0.450 4.450 16 H 0.116 0.884 17 C -0.210 4.210 18 N -0.565 5.565 19 Si 0.799 3.201 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.198 1.198 23 C -0.002 4.002 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.227 0.773 30 H 0.204 0.796 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.727 -17.786 -6.077 20.322 hybrid contribution 0.516 0.361 1.037 1.214 sum -7.211 -17.425 -5.040 19.520 Atomic orbital electron populations 1.21637 0.94094 1.03073 1.01698 1.22126 0.97983 0.91830 1.07789 1.23211 0.86296 0.93422 0.69582 1.90557 1.58833 1.49724 1.37896 1.21063 0.97227 0.93528 1.08398 1.22214 0.90526 1.00811 0.87208 1.21663 0.97959 0.94064 1.01721 1.21094 0.84977 0.95413 0.94625 1.98453 1.11549 1.95830 1.95799 1.31095 1.02184 1.25417 1.18766 1.02999 0.72933 0.75903 0.73076 1.93473 1.52380 1.65421 1.87358 1.93489 1.60754 1.87675 1.56184 1.51159 1.20130 1.81085 1.19405 1.19266 0.95284 1.46139 0.84324 0.88426 1.25852 0.96406 0.96907 1.01851 1.69780 1.10321 1.46875 1.29540 0.85253 0.77959 0.79302 0.77541 1.18625 1.20250 1.19824 1.21180 0.92376 0.98926 0.87748 0.89132 0.93848 0.93588 0.84515 0.84869 0.77340 0.79611 0.75701 0.91793 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.20 71.98 0.66 -1.32 16 2 C -0.16 -1.74 5.03 29.85 0.15 -1.59 16 3 C 0.39 9.13 7.11 28.01 0.20 9.33 16 4 O -0.49 -16.06 15.97 -2.98 -0.05 -16.10 16 5 C -0.20 -5.11 5.87 -20.15 -0.12 -5.22 16 6 C 0.01 0.17 9.47 22.57 0.21 0.38 16 7 C -0.14 -2.88 9.81 22.25 0.22 -2.66 16 8 C 0.07 2.20 6.31 22.43 0.14 2.35 16 9 Cl -0.05 -1.60 26.41 -2.72 -0.07 -1.67 16 10 C -0.69 -26.68 5.81 22.25 0.13 -26.55 16 11 S 2.66 124.38 5.01 -56.49 -0.28 124.10 16 12 O -1.00 -51.69 16.67 -128.00 -2.13 -53.83 16 13 O -0.99 -47.41 16.56 -128.00 -2.12 -49.53 16 14 N -0.96 -48.69 5.43 -54.26 -0.29 -48.99 16 15 C -0.32 -16.73 9.63 84.03 0.81 -15.92 16 16 H 0.10 5.01 7.82 -2.91 -0.02 4.99 16 17 C -0.01 -0.42 5.50 84.86 0.47 0.04 16 18 N -0.92 -50.80 13.06 21.65 0.28 -50.52 16 19 Si 0.98 41.56 29.55 68.60 2.03 43.59 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.02 0.63 9.09 22.57 0.21 0.83 16 24 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 26 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 27 H 0.14 0.57 8.09 -2.38 -0.02 0.55 16 28 H 0.13 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.21 0.76 7.05 -2.91 -0.02 0.74 16 30 H 0.19 2.44 8.06 -2.92 -0.02 2.41 16 31 H 0.41 21.10 8.04 -96.75 -0.78 20.32 16 32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.13 5.30 6.91 -2.91 -0.02 5.28 16 Total: -1.00 -75.06 319.54 0.83 -74.23 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.39 Total: 19.05 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.08 Total: -40.33 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -0.01 Total: -99.51 kcal Atomic # 8 Polarization: -115.16 SS G_CDS: -4.30 Total: -119.46 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 124.38 SS G_CDS: -0.28 Total: 124.10 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.67 kcal Total: -75.06 0.83 -74.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280220167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.190 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds