Wall clock time and date at job start Tue Mar 31 2020 11:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 5 5 O 1.21293 * 120.00456 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99675 * 359.72090 * 4 3 2 7 7 S 1.80997 * 109.47151 * 180.27780 * 6 4 3 8 8 C 1.76202 * 100.00066 * 179.97438 * 7 6 4 9 9 H 1.07995 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.38802 * 119.99989 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00063 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47157 * 59.99783 * 12 10 8 14 14 H 1.48496 * 109.47271 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46987 * 300.00317 * 12 10 8 16 16 C 1.40093 * 119.99991 * 269.99208 * 3 2 1 17 17 C 1.38797 * 120.07236 * 269.72654 * 16 3 2 18 18 C 1.38135 * 119.97104 * 179.74626 * 17 16 3 19 19 C 1.38384 * 120.09705 * 0.52797 * 18 17 16 20 20 Cl 1.73605 * 119.93650 * 179.76750 * 19 18 17 21 21 C 1.38361 * 120.13166 * 359.75056 * 19 18 17 22 22 C 1.38308 * 120.03377 * 359.97183 * 21 19 18 23 23 F 1.35101 * 120.05116 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 26 26 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 27 27 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 28 28 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 29 29 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 30 30 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 31 31 H 0.97003 * 120.00297 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.01070 * 0.02562 * 17 16 3 33 33 H 1.07998 * 119.95265 * 180.27894 * 18 17 16 34 34 H 1.08000 * 119.98647 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6477 3.1600 1.1672 6 6 1.9859 1.3083 2.4723 7 16 2.3716 2.4195 3.8480 8 6 1.9913 1.3659 5.2081 9 1 1.6372 0.3613 5.0305 10 6 2.1480 1.8268 6.5080 11 7 2.5811 3.0509 6.7246 12 14 1.7455 0.7097 7.9500 13 1 2.6035 -0.5009 7.8928 14 1 1.9960 1.4338 9.2221 15 1 0.3175 0.3079 7.8814 16 6 2.2519 2.0415 -1.2132 17 6 3.5020 1.9737 -1.8125 18 6 3.7286 2.6213 -3.0115 19 6 2.7140 3.3469 -3.6108 20 17 3.0051 4.1641 -5.1146 21 6 1.4679 3.4221 -3.0141 22 6 1.2335 2.7710 -1.8166 23 9 0.0170 2.8446 -1.2334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.9376 1.0142 2.5258 30 1 2.6158 0.4209 2.5344 31 1 2.6902 3.3731 7.6330 32 1 4.2959 1.4111 -1.3439 33 1 4.7001 2.5646 -3.4798 34 1 0.6780 3.9893 -3.4837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281780621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:48 Heat of formation + Delta-G solvation = -56.582546 kcal Electronic energy + Delta-G solvation = -21470.774005 eV Core-core repulsion = 17856.594209 eV Total energy + Delta-G solvation = -3614.179796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.07142 -40.40773 -38.67691 -36.82934 -35.78710 -32.45584 -31.76462 -31.01419 -29.89544 -28.30063 -25.52164 -23.72570 -23.16486 -22.98319 -19.79045 -18.09982 -17.74508 -17.25343 -16.98719 -16.49417 -15.65413 -15.56709 -14.96883 -14.82851 -14.51599 -14.11224 -13.89123 -13.81405 -13.50325 -13.47269 -13.03952 -12.78406 -12.58892 -12.12505 -11.95087 -11.83156 -11.54076 -11.35229 -11.17976 -11.07312 -11.05008 -10.79835 -9.87114 -9.60211 -9.29610 -9.08677 -8.97697 -8.87286 -8.27769 -6.54377 -6.24072 -3.95632 0.59222 0.79032 1.67889 2.68074 2.87283 3.06944 3.21534 3.21900 3.27236 3.49377 3.95094 4.17286 4.38209 4.62372 4.74500 4.83364 4.89970 5.05822 5.10448 5.12106 5.27459 5.31717 5.50558 5.62584 5.66699 5.70586 5.74640 5.80205 5.92173 6.00490 6.13536 6.22537 6.74866 7.26325 7.56623 8.32187 8.38859 9.20949 10.83283 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.002997 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.485361 B = 9341.496948 C = 9748.498601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.109 3.891 3 N -0.585 5.585 4 C 0.538 3.462 5 O -0.500 6.500 6 C -0.148 4.148 7 S -0.059 6.059 8 C -0.536 4.536 9 H 0.073 0.927 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.124 3.876 17 C -0.069 4.069 18 C -0.114 4.114 19 C -0.008 4.008 20 Cl -0.059 7.059 21 C -0.144 4.144 22 C 0.123 3.877 23 F -0.122 7.122 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.269 0.731 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -5.746 -22.363 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 N -0.319 5.319 4 C 0.327 3.673 5 O -0.372 6.372 6 C -0.298 4.298 7 S 0.167 5.833 8 C -0.684 4.684 9 H 0.091 0.909 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.745 3.255 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.032 3.968 17 C -0.089 4.089 18 C -0.133 4.133 19 C -0.035 4.035 20 Cl -0.030 7.030 21 C -0.164 4.164 22 C 0.101 3.899 23 F -0.100 7.100 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.354 -3.830 -22.281 22.611 hybrid contribution -1.024 -1.920 0.892 2.352 sum -1.379 -5.750 -21.389 22.192 Atomic orbital electron populations 1.22267 0.95449 1.02442 1.03219 1.21692 0.94961 0.80900 1.03741 1.45669 1.68685 1.14662 1.02865 1.20567 0.76094 0.86490 0.84123 1.90735 1.42749 1.17198 1.86483 1.23579 1.05116 1.04629 0.96513 1.85448 1.86772 1.17801 0.93231 1.22803 1.52042 1.01467 0.92116 0.90904 1.24993 0.94607 0.95547 0.98374 1.70007 1.42779 1.15609 1.21835 0.86218 0.78985 0.80001 0.80270 1.19913 1.20796 1.19906 1.17629 0.92774 0.97690 0.88711 1.21253 0.95643 0.98018 0.93985 1.20991 0.99138 0.97610 0.95559 1.20604 0.94582 0.98432 0.89835 1.98387 1.96135 1.77681 1.30759 1.20875 0.97712 1.02557 0.95258 1.17796 0.81373 0.98424 0.92289 1.91543 1.40566 1.94390 1.83490 0.91222 0.91617 0.92278 0.90289 0.89049 0.88827 0.88922 0.92077 0.83638 0.83790 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 10.13 37.16 0.38 -1.46 16 2 C 0.11 1.16 5.92 -4.04 -0.02 1.14 16 3 N -0.58 -8.42 2.34 -113.37 -0.27 -8.69 16 4 C 0.54 10.24 7.66 -10.98 -0.08 10.16 16 5 O -0.50 -11.54 15.84 5.55 0.09 -11.45 16 6 C -0.15 -2.95 4.71 36.01 0.17 -2.78 16 7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 8 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 9 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 10 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 11 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 12 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.12 1.66 4.47 -83.57 -0.37 1.29 16 17 C -0.07 -0.76 9.97 -39.41 -0.39 -1.16 16 18 C -0.11 -1.07 9.82 -39.57 -0.39 -1.46 16 19 C -0.01 -0.08 6.32 -39.48 -0.25 -0.33 16 20 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 21 C -0.14 -1.57 9.80 -39.51 -0.39 -1.96 16 22 C 0.12 1.62 7.31 -39.25 -0.29 1.34 16 23 F -0.12 -1.79 15.83 2.25 0.04 -1.75 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.81 7.20 -51.93 -0.37 0.44 16 26 H 0.06 0.64 6.99 -51.93 -0.36 0.28 16 27 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.09 0.93 6.45 -51.93 -0.33 0.59 16 29 H 0.09 1.74 7.16 -51.91 -0.37 1.37 16 30 H 0.09 1.66 7.41 -51.92 -0.38 1.28 16 31 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -33.71 330.40 -8.09 -41.80 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.48 Total: -1.99 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.44 Total: -7.97 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.47 Total: -33.94 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.71 -8.09 -41.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281780621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.782 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds