Wall clock time and date at job start Tue Mar 31 2020 11:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 5 5 O 1.21293 * 120.00456 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99675 * 359.72090 * 4 3 2 7 7 S 1.80997 * 109.47151 * 180.27780 * 6 4 3 8 8 C 1.76202 * 100.00066 * 179.97438 * 7 6 4 9 9 H 1.07995 * 120.00172 * 0.02562 * 8 7 6 10 10 C 1.38802 * 119.99989 * 179.97438 * 8 7 6 11 11 N 1.31633 * 120.00063 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00195 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47157 * 59.99783 * 12 10 8 14 14 H 1.48496 * 109.47271 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46987 * 300.00317 * 12 10 8 16 16 C 1.40093 * 119.99991 * 269.99208 * 3 2 1 17 17 C 1.38797 * 120.07236 * 269.72654 * 16 3 2 18 18 C 1.38135 * 119.97104 * 179.74626 * 17 16 3 19 19 C 1.38384 * 120.09705 * 0.52797 * 18 17 16 20 20 Cl 1.73605 * 119.93650 * 179.76750 * 19 18 17 21 21 C 1.38361 * 120.13166 * 359.75056 * 19 18 17 22 22 C 1.38308 * 120.03377 * 359.97183 * 21 19 18 23 23 F 1.35101 * 120.05116 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 26 26 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 27 27 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 28 28 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 29 29 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 30 30 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 31 31 H 0.97003 * 120.00297 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.01070 * 0.02562 * 17 16 3 33 33 H 1.07998 * 119.95265 * 180.27894 * 18 17 16 34 34 H 1.08000 * 119.98647 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 1.1672 5 8 2.6477 3.1600 1.1672 6 6 1.9859 1.3083 2.4723 7 16 2.3716 2.4195 3.8480 8 6 1.9913 1.3659 5.2081 9 1 1.6372 0.3613 5.0305 10 6 2.1480 1.8268 6.5080 11 7 2.5811 3.0509 6.7246 12 14 1.7455 0.7097 7.9500 13 1 2.6035 -0.5009 7.8928 14 1 1.9960 1.4338 9.2221 15 1 0.3175 0.3079 7.8814 16 6 2.2519 2.0415 -1.2132 17 6 3.5020 1.9737 -1.8125 18 6 3.7286 2.6213 -3.0115 19 6 2.7140 3.3469 -3.6108 20 17 3.0051 4.1641 -5.1146 21 6 1.4679 3.4221 -3.0141 22 6 1.2335 2.7710 -1.8166 23 9 0.0170 2.8446 -1.2334 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.9376 1.0142 2.5258 30 1 2.6158 0.4209 2.5344 31 1 2.6902 3.3731 7.6330 32 1 4.2959 1.4111 -1.3439 33 1 4.7001 2.5646 -3.4798 34 1 0.6780 3.9893 -3.4837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281780621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:48 Heat of formation + Delta-G solvation = -76.017008 kcal Electronic energy + Delta-G solvation = -21471.616746 eV Core-core repulsion = 17856.594209 eV Total energy + Delta-G solvation = -3615.022538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.11450 -41.58304 -39.74209 -37.72352 -36.91680 -34.58754 -32.72445 -31.87970 -31.23463 -29.48250 -27.66610 -24.62578 -24.19584 -23.94842 -21.02701 -19.68727 -19.05451 -18.41857 -18.09015 -17.65359 -16.88134 -16.71401 -16.55114 -16.36658 -16.01152 -15.27770 -14.96965 -14.80932 -14.76340 -14.52326 -14.31678 -14.10451 -13.61984 -13.46117 -13.19527 -12.87511 -12.82324 -12.80186 -12.63210 -12.39371 -12.09574 -12.05834 -11.76233 -11.13153 -11.09798 -10.30252 -10.17154 -10.13431 -9.77685 -8.69124 -8.34742 -6.13775 -0.30816 -0.06842 0.88568 1.19702 1.38944 1.43596 1.44614 1.54151 1.91010 2.20822 2.26657 2.99585 3.03275 3.22520 3.55013 3.68345 3.84231 3.92242 3.99958 4.13896 4.23956 4.28838 4.41492 4.46245 4.51175 4.78557 4.82376 4.88022 4.92850 5.02269 5.25948 5.32513 5.41562 5.70819 6.00975 6.19568 6.98756 7.06390 8.74276 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.002997 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.485361 B = 9341.496948 C = 9748.498601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.570 5.570 4 C 0.539 3.461 5 O -0.551 6.551 6 C -0.121 4.121 7 S -0.150 6.150 8 C -0.545 4.545 9 H 0.085 0.915 10 C 0.014 3.986 11 N -0.912 5.912 12 Si 0.999 3.001 13 H -0.260 1.260 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.097 3.903 17 C -0.070 4.070 18 C -0.101 4.101 19 C -0.008 4.008 20 Cl -0.044 7.044 21 C -0.142 4.142 22 C 0.098 3.902 23 F -0.138 7.138 24 H 0.097 0.903 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.271 0.729 32 H 0.160 0.840 33 H 0.174 0.826 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -8.024 -23.754 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.301 5.301 4 C 0.328 3.672 5 O -0.428 6.428 6 C -0.272 4.272 7 S 0.077 5.923 8 C -0.693 4.693 9 H 0.103 0.897 10 C -0.191 4.191 11 N -0.548 5.548 12 Si 0.820 3.180 13 H -0.184 1.184 14 H -0.205 1.205 15 H -0.187 1.187 16 C 0.006 3.994 17 C -0.090 4.090 18 C -0.120 4.120 19 C -0.035 4.035 20 Cl -0.015 7.015 21 C -0.162 4.162 22 C 0.077 3.923 23 F -0.116 7.116 24 H 0.116 0.884 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.178 0.822 33 H 0.192 0.808 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.212 -6.153 -23.725 24.511 hybrid contribution -1.067 -1.214 1.089 1.949 sum -1.280 -7.368 -22.636 23.839 Atomic orbital electron populations 1.22232 0.95227 1.03786 1.01710 1.22053 0.95139 0.79026 1.05785 1.45531 1.66977 1.15646 1.01984 1.20364 0.75900 0.85844 0.85095 1.90710 1.45543 1.19231 1.87279 1.23384 1.06266 1.03361 0.94190 1.85632 1.87503 1.22003 0.97184 1.23154 1.51876 1.01787 0.92465 0.89690 1.26134 0.94132 0.97135 1.01696 1.70180 1.44203 1.17883 1.22556 0.85003 0.79303 0.77868 0.75829 1.18427 1.20517 1.18700 1.17909 0.94017 0.99013 0.88476 1.21433 0.94858 0.98211 0.94459 1.21314 1.00115 0.95938 0.94646 1.20736 0.94322 0.98150 0.90266 1.98399 1.96011 1.77345 1.29698 1.21033 0.98650 1.01982 0.94486 1.18039 0.81055 0.99760 0.93445 1.91497 1.41500 1.94673 1.83950 0.88406 0.94010 0.92881 0.87009 0.88224 0.87438 0.86490 0.91987 0.82224 0.80835 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 10.13 71.98 0.73 -2.59 16 2 C 0.10 1.92 5.92 86.38 0.51 2.43 16 3 N -0.57 -15.93 2.34 -630.99 -1.48 -17.41 16 4 C 0.54 20.68 7.66 87.66 0.67 21.35 16 5 O -0.55 -26.33 15.84 -3.07 -0.05 -26.38 16 6 C -0.12 -4.83 4.71 71.24 0.34 -4.49 16 7 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 8 C -0.55 -30.81 9.50 67.95 0.65 -30.17 16 9 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 10 C 0.01 0.78 5.49 84.86 0.47 1.25 16 11 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 12 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 13 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 16 C 0.10 2.52 4.47 38.15 0.17 2.69 16 17 C -0.07 -1.41 9.97 22.38 0.22 -1.19 16 18 C -0.10 -1.64 9.82 22.28 0.22 -1.42 16 19 C -0.01 -0.14 6.32 22.33 0.14 0.00 16 20 Cl -0.04 -0.67 28.95 -2.72 -0.08 -0.75 16 21 C -0.14 -2.93 9.80 22.32 0.22 -2.71 16 22 C 0.10 2.57 7.31 22.48 0.16 2.73 16 23 F -0.14 -4.13 15.83 44.97 0.71 -3.42 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.00 7.20 -2.39 -0.02 0.99 16 26 H 0.05 1.09 6.99 -2.39 -0.02 1.08 16 27 H 0.11 1.47 8.05 -2.39 -0.02 1.45 16 28 H 0.10 1.76 6.45 -2.39 -0.02 1.74 16 29 H 0.11 3.97 7.16 -2.39 -0.02 3.95 16 30 H 0.12 4.05 7.41 -2.40 -0.02 4.04 16 31 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -76.20 330.40 5.89 -70.31 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.13 Total: 9.75 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.50 Total: -12.12 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.19 Total: -73.06 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.71 Total: -3.42 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -76.20 5.89 -70.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281780621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.706 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds