Wall clock time and date at job start Tue Mar 31 2020 11:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47346 * 274.99035 * 3 2 1 5 5 H 1.48494 * 109.46996 * 34.98871 * 3 2 1 6 6 H 1.48500 * 109.47325 * 154.98678 * 3 2 1 7 7 C 1.40046 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 186.15008 * 7 2 1 9 9 C 1.46371 * 119.99997 * 6.14572 * 7 2 1 10 10 O 1.21687 * 119.99909 * 353.95491 * 9 7 2 11 11 N 1.34773 * 120.00104 * 173.95298 * 9 7 2 12 12 C 1.46507 * 120.00139 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.46780 * 325.00012 * 12 11 9 14 14 C 1.52995 * 109.47081 * 84.99919 * 12 11 9 15 15 C 1.52997 * 109.47242 * 295.00105 * 14 12 11 16 16 O 1.42900 * 109.47189 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46864 * 205.00243 * 12 11 9 18 18 C 1.38269 * 119.98030 * 319.72025 * 17 12 11 19 19 C 1.38204 * 120.03453 * 179.73140 * 18 17 12 20 20 C 1.38348 * 120.00439 * 0.54628 * 19 18 17 21 21 Cl 1.73598 * 120.02562 * 179.74959 * 20 19 18 22 22 C 1.38451 * 119.95716 * 359.72848 * 20 19 18 23 23 Cl 1.73599 * 120.01663 * 180.02562 * 22 20 19 24 24 C 1.38210 * 119.97855 * 140.00271 * 17 12 11 25 25 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00121 * 0.02562 * 11 9 7 27 27 H 1.08995 * 109.47624 * 55.00410 * 14 12 11 28 28 H 1.09001 * 109.47009 * 175.00312 * 14 12 11 29 29 H 1.09005 * 109.47296 * 299.99910 * 15 14 12 30 30 H 1.08999 * 109.47225 * 59.99719 * 15 14 12 31 31 H 0.96706 * 113.99961 * 180.02562 * 16 15 14 32 32 H 1.07993 * 119.97902 * 359.97438 * 18 17 12 33 33 H 1.07998 * 120.00191 * 180.25716 * 19 18 17 34 34 H 1.07998 * 119.99917 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3828 2.1074 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0997 9 6 1.2814 -2.4767 -0.1368 10 8 0.0646 -2.4826 -0.1390 11 7 1.9611 -3.6340 -0.2599 12 6 1.2349 -4.8990 -0.3969 13 1 0.3227 -4.8606 0.1986 14 6 0.8752 -5.1240 -1.8668 15 6 -0.1061 -4.0426 -2.3231 16 8 -0.4425 -4.2531 -3.6959 17 6 2.1034 -6.0317 0.0869 18 6 3.4534 -6.0433 -0.2116 19 6 4.2519 -7.0786 0.2363 20 6 3.6985 -8.1098 0.9741 21 17 4.6999 -9.4138 1.5313 22 6 2.3456 -8.1010 1.2681 23 17 1.6498 -9.3939 2.1943 24 6 1.5487 -7.0610 0.8238 25 1 -0.4850 0.8401 0.0004 26 1 2.9311 -3.6294 -0.2579 27 1 1.7791 -5.0740 -2.4739 28 1 0.4141 -6.1050 -1.9820 29 1 -1.0101 -4.0927 -1.7161 30 1 0.3549 -3.0616 -2.2079 31 1 -1.0623 -3.6024 -4.0533 32 1 3.8848 -5.2410 -0.7916 33 1 5.3071 -7.0851 0.0064 34 1 0.4932 -7.0538 1.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288410679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:09 Heat of formation + Delta-G solvation = -86.702131 kcal Electronic energy + Delta-G solvation = -21631.146931 eV Core-core repulsion = 18001.244556 eV Total energy + Delta-G solvation = -3629.902375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93651 -37.99951 -36.64991 -36.61925 -36.11818 -34.32173 -32.52521 -31.27306 -30.52445 -29.97838 -26.52093 -24.91650 -23.15868 -21.96385 -20.90996 -19.41716 -17.97515 -16.98674 -16.76135 -16.13665 -15.68038 -15.36612 -15.01320 -14.52141 -14.21804 -13.97519 -13.76757 -13.54442 -13.09841 -12.99835 -12.43388 -12.02102 -11.98713 -11.82494 -11.72966 -11.46509 -11.18619 -11.13479 -11.05635 -10.98368 -10.79299 -10.55860 -10.38741 -10.22293 -9.25167 -9.06454 -8.94028 -8.71220 -7.76877 -7.69538 -6.31333 -4.75502 0.84291 0.99321 1.71186 2.07995 3.07155 3.15592 3.18206 3.33280 4.01386 4.40335 4.46236 4.52862 4.68630 4.91536 5.06155 5.12417 5.20021 5.54336 5.59532 5.61385 5.77579 5.83627 5.92604 6.02412 6.14756 6.30923 6.38275 6.49605 6.67704 6.77958 7.33333 7.74683 7.91250 8.14607 8.19836 8.91861 9.34782 10.45322 10.63110 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003473 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.321589 B = 8059.682500 C = 8801.787501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.090 3.910 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.575 6.575 11 N -0.760 5.760 12 C 0.193 3.807 13 H 0.092 0.908 14 C -0.117 4.117 15 C 0.080 3.920 16 O -0.592 6.592 17 C -0.055 4.055 18 C -0.094 4.094 19 C -0.096 4.096 20 C -0.038 4.038 21 Cl -0.058 7.058 22 C -0.028 4.028 23 Cl -0.055 7.055 24 C -0.091 4.091 25 H 0.269 0.731 26 H 0.381 0.619 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.375 0.625 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -13.705 0.049 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.416 5.416 12 C 0.087 3.913 13 H 0.110 0.890 14 C -0.156 4.156 15 C 0.003 3.997 16 O -0.397 6.397 17 C -0.056 4.056 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.066 4.066 21 Cl -0.029 7.029 22 C -0.055 4.055 23 Cl -0.026 7.026 24 C -0.110 4.110 25 H 0.080 0.920 26 H 0.214 0.786 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.221 0.779 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.691 -14.329 0.286 15.420 hybrid contribution 0.622 1.018 0.152 1.203 sum 6.313 -13.311 0.439 14.738 Atomic orbital electron populations 1.70004 1.07006 1.27393 1.34935 1.25667 0.94603 1.00248 0.92519 0.86381 0.80312 0.81517 0.78728 1.19781 1.20439 1.18874 1.20869 0.94176 0.89476 1.53649 0.91400 1.18175 0.87240 0.82183 0.76281 1.90604 1.13814 1.86148 1.55242 1.46359 1.08603 1.04961 1.81709 1.19381 0.94710 0.82497 0.94755 0.89009 1.21896 0.99555 0.98607 0.95579 1.22389 0.97809 0.99314 0.80165 1.86306 1.68279 1.57107 1.28041 1.20249 0.94564 0.95403 0.95356 1.21125 0.93073 0.98006 0.99032 1.21014 1.00876 0.92463 0.97123 1.20732 0.90086 0.93113 1.02628 1.98374 1.68614 1.47685 1.88269 1.20703 0.91739 0.92939 1.00142 1.98380 1.84206 1.48306 1.71720 1.20955 1.00548 0.92019 0.97505 0.92050 0.78624 0.91676 0.91910 0.93292 0.91007 0.77891 0.84091 0.84016 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.41 11.85 55.55 0.66 -20.75 16 2 C 0.09 2.35 5.49 -17.37 -0.10 2.25 16 3 Si 0.91 19.15 29.56 -169.99 -5.03 14.13 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.54 -14.26 9.53 -35.63 -0.34 -14.60 16 8 H 0.07 1.64 7.85 -52.48 -0.41 1.23 16 9 C 0.56 14.13 6.31 -12.99 -0.08 14.05 16 10 O -0.57 -16.31 12.18 5.20 0.06 -16.24 16 11 N -0.76 -15.00 4.97 -56.34 -0.28 -15.28 16 12 C 0.19 3.30 2.46 -69.08 -0.17 3.13 16 13 H 0.09 1.75 7.44 -51.93 -0.39 1.37 16 14 C -0.12 -1.98 5.23 -26.74 -0.14 -2.12 16 15 C 0.08 1.57 5.65 37.16 0.21 1.78 16 16 O -0.59 -10.59 13.66 -35.23 -0.48 -11.07 16 17 C -0.05 -0.76 4.95 -104.62 -0.52 -1.28 16 18 C -0.09 -1.14 9.05 -39.58 -0.36 -1.50 16 19 C -0.10 -1.06 9.83 -39.55 -0.39 -1.45 16 20 C -0.04 -0.46 6.32 -39.46 -0.25 -0.70 16 21 Cl -0.06 -0.64 27.96 -51.86 -1.45 -2.09 16 22 C -0.03 -0.35 6.32 -39.46 -0.25 -0.60 16 23 Cl -0.06 -0.65 27.96 -51.86 -1.45 -2.10 16 24 C -0.09 -1.19 9.45 -39.55 -0.37 -1.57 16 25 H 0.27 6.88 8.29 -40.82 -0.34 6.54 16 26 H 0.38 6.63 6.86 -40.82 -0.28 6.35 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.01 7.84 -51.93 -0.41 0.61 16 30 H 0.07 1.67 5.64 -51.93 -0.29 1.38 16 31 H 0.38 5.27 9.12 45.56 0.42 5.69 16 32 H 0.14 1.56 6.93 -52.49 -0.36 1.19 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -30.79 322.44 -8.41 -39.20 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -2.55 Total: 11.95 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.75 Total: -2.60 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.38 Total: -36.03 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.42 Total: -27.31 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.90 Total: -4.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.79 -8.41 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288410679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.499 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds