Wall clock time and date at job start Tue Mar 31 2020 11:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47346 * 274.99035 * 3 2 1 5 5 H 1.48494 * 109.46996 * 34.98871 * 3 2 1 6 6 H 1.48500 * 109.47325 * 154.98678 * 3 2 1 7 7 C 1.40046 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99845 * 186.15008 * 7 2 1 9 9 C 1.46371 * 119.99997 * 6.14572 * 7 2 1 10 10 O 1.21687 * 119.99909 * 353.95491 * 9 7 2 11 11 N 1.34773 * 120.00104 * 173.95298 * 9 7 2 12 12 C 1.46507 * 120.00139 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.46780 * 325.00012 * 12 11 9 14 14 C 1.52995 * 109.47081 * 84.99919 * 12 11 9 15 15 C 1.52997 * 109.47242 * 295.00105 * 14 12 11 16 16 O 1.42900 * 109.47189 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.46864 * 205.00243 * 12 11 9 18 18 C 1.38269 * 119.98030 * 319.72025 * 17 12 11 19 19 C 1.38204 * 120.03453 * 179.73140 * 18 17 12 20 20 C 1.38348 * 120.00439 * 0.54628 * 19 18 17 21 21 Cl 1.73598 * 120.02562 * 179.74959 * 20 19 18 22 22 C 1.38451 * 119.95716 * 359.72848 * 20 19 18 23 23 Cl 1.73599 * 120.01663 * 180.02562 * 22 20 19 24 24 C 1.38210 * 119.97855 * 140.00271 * 17 12 11 25 25 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00121 * 0.02562 * 11 9 7 27 27 H 1.08995 * 109.47624 * 55.00410 * 14 12 11 28 28 H 1.09001 * 109.47009 * 175.00312 * 14 12 11 29 29 H 1.09005 * 109.47296 * 299.99910 * 15 14 12 30 30 H 1.08999 * 109.47225 * 59.99719 * 15 14 12 31 31 H 0.96706 * 113.99961 * 180.02562 * 16 15 14 32 32 H 1.07993 * 119.97902 * 359.97438 * 18 17 12 33 33 H 1.07998 * 120.00191 * 180.25716 * 19 18 17 34 34 H 1.07998 * 119.99917 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3828 2.1074 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0997 9 6 1.2814 -2.4767 -0.1368 10 8 0.0646 -2.4826 -0.1390 11 7 1.9611 -3.6340 -0.2599 12 6 1.2349 -4.8990 -0.3969 13 1 0.3227 -4.8606 0.1986 14 6 0.8752 -5.1240 -1.8668 15 6 -0.1061 -4.0426 -2.3231 16 8 -0.4425 -4.2531 -3.6959 17 6 2.1034 -6.0317 0.0869 18 6 3.4534 -6.0433 -0.2116 19 6 4.2519 -7.0786 0.2363 20 6 3.6985 -8.1098 0.9741 21 17 4.6999 -9.4138 1.5313 22 6 2.3456 -8.1010 1.2681 23 17 1.6498 -9.3939 2.1943 24 6 1.5487 -7.0610 0.8238 25 1 -0.4850 0.8401 0.0004 26 1 2.9311 -3.6294 -0.2579 27 1 1.7791 -5.0740 -2.4739 28 1 0.4141 -6.1050 -1.9820 29 1 -1.0101 -4.0927 -1.7161 30 1 0.3549 -3.0616 -2.2079 31 1 -1.0623 -3.6024 -4.0533 32 1 3.8848 -5.2410 -0.7916 33 1 5.3071 -7.0851 0.0064 34 1 0.4932 -7.0538 1.0523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288410679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:08 Heat of formation + Delta-G solvation = -108.018024 kcal Electronic energy + Delta-G solvation = -21632.071258 eV Core-core repulsion = 18001.244556 eV Total energy + Delta-G solvation = -3630.826702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08137 -39.53091 -37.79421 -37.59525 -37.56585 -35.84255 -34.48868 -32.52297 -31.83626 -31.19944 -28.39577 -26.35952 -24.15093 -23.21214 -22.50138 -21.03075 -19.47988 -18.40123 -18.14157 -17.56449 -17.13070 -16.73166 -16.36877 -15.95520 -15.53781 -15.15981 -15.07838 -14.87430 -14.60107 -14.43174 -14.03292 -13.52583 -13.17812 -12.94985 -12.92124 -12.82852 -12.76571 -12.54259 -12.46081 -12.17116 -12.07946 -11.99919 -11.90964 -11.71019 -10.92421 -10.79823 -10.02285 -9.84217 -9.63433 -9.45915 -8.26054 -6.79173 -0.15800 0.03596 0.77569 1.13640 1.42074 1.43157 1.57481 2.25156 2.33912 2.52862 3.03559 3.23218 3.58680 3.61526 3.79770 4.04354 4.07118 4.13784 4.22274 4.31819 4.50594 4.64936 4.71005 4.82262 4.89081 4.98766 5.11384 5.18226 5.33487 5.37170 5.52148 5.93277 6.22925 6.30024 6.79273 6.92789 7.56468 8.53255 8.70985 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003473 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.321589 B = 8059.682500 C = 8801.787501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.547 3.453 10 O -0.613 6.613 11 N -0.748 5.748 12 C 0.201 3.799 13 H 0.065 0.935 14 C -0.109 4.109 15 C 0.092 3.908 16 O -0.591 6.591 17 C -0.067 4.067 18 C -0.091 4.091 19 C -0.086 4.086 20 C -0.040 4.040 21 Cl -0.048 7.048 22 C -0.035 4.035 23 Cl -0.051 7.051 24 C -0.095 4.095 25 H 0.272 0.728 26 H 0.394 0.606 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.390 0.610 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -14.344 -0.182 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.174 1.174 7 C -0.610 4.610 8 H 0.102 0.898 9 C 0.351 3.649 10 O -0.499 6.499 11 N -0.403 5.403 12 C 0.095 3.905 13 H 0.083 0.917 14 C -0.148 4.148 15 C 0.014 3.986 16 O -0.399 6.399 17 C -0.068 4.068 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.068 4.068 21 Cl -0.019 7.019 22 C -0.063 4.063 23 Cl -0.021 7.021 24 C -0.114 4.114 25 H 0.082 0.918 26 H 0.229 0.771 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.239 0.761 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.110 -15.009 0.047 17.060 hybrid contribution -0.123 1.088 0.219 1.117 sum 7.987 -13.921 0.266 16.052 Atomic orbital electron populations 1.70154 1.09137 1.28667 1.36539 1.26755 0.95389 1.04346 0.91395 0.85161 0.79091 0.76074 0.78977 1.19050 1.20158 1.17418 1.21393 0.95142 0.90427 1.54067 0.89845 1.18354 0.86923 0.83687 0.75903 1.90572 1.15489 1.87117 1.56726 1.45987 1.09215 1.04764 1.80329 1.19284 0.94159 0.82394 0.94699 0.91691 1.21834 0.99258 0.98365 0.95339 1.22107 0.97279 0.98384 0.80801 1.86278 1.68855 1.57796 1.26966 1.19916 0.95031 0.94768 0.97063 1.21257 0.92224 0.98673 0.98816 1.21279 1.02061 0.91283 0.95828 1.20923 0.90005 0.93572 1.02273 1.98382 1.68155 1.47208 1.88125 1.20743 0.92124 0.92999 1.00397 1.98381 1.84241 1.47949 1.71574 1.20960 1.00899 0.92122 0.97467 0.91769 0.77059 0.90684 0.90069 0.95308 0.94911 0.76115 0.82849 0.81143 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.04 11.85 21.83 0.26 -46.78 16 2 C 0.04 1.94 5.49 85.30 0.47 2.41 16 3 Si 0.99 39.20 29.56 68.60 2.03 41.23 16 4 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.57 -30.28 9.53 24.83 0.24 -30.04 16 8 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 9 C 0.55 28.55 6.31 86.36 0.54 29.09 16 10 O -0.61 -36.38 12.18 -4.31 -0.05 -36.43 16 11 N -0.75 -29.64 4.97 -450.39 -2.24 -31.88 16 12 C 0.20 6.89 2.46 44.24 0.11 7.00 16 13 H 0.06 2.59 7.44 -2.38 -0.02 2.58 16 14 C -0.11 -3.65 5.23 30.59 0.16 -3.49 16 15 C 0.09 3.70 5.65 71.98 0.41 4.11 16 16 O -0.59 -21.04 13.66 -148.98 -2.04 -23.08 16 17 C -0.07 -1.78 4.95 -19.86 -0.10 -1.88 16 18 C -0.09 -2.00 9.05 22.27 0.20 -1.80 16 19 C -0.09 -1.63 9.83 22.29 0.22 -1.41 16 20 C -0.04 -0.86 6.32 22.35 0.14 -0.72 16 21 Cl -0.05 -0.93 27.96 -2.72 -0.08 -1.01 16 22 C -0.04 -0.83 6.32 22.35 0.14 -0.68 16 23 Cl -0.05 -1.12 27.96 -2.72 -0.08 -1.20 16 24 C -0.10 -2.41 9.45 22.29 0.21 -2.20 16 25 H 0.27 14.38 8.29 -92.71 -0.77 13.61 16 26 H 0.39 13.36 6.86 -92.71 -0.64 12.72 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.03 1.26 7.84 -2.38 -0.02 1.24 16 30 H 0.03 1.59 5.64 -2.39 -0.01 1.57 16 31 H 0.39 10.98 9.12 -74.05 -0.68 10.31 16 32 H 0.15 2.95 6.93 -2.91 -0.02 2.93 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.15 3.52 8.04 -2.91 -0.02 3.50 16 Total: -1.00 -67.91 322.44 0.41 -67.50 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.14 Total: 31.27 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 2.74 Total: 0.38 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.98 Total: -78.66 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -2.09 Total: -59.51 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.15 Total: -2.21 kcal Total: -67.91 0.41 -67.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288410679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.517 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds