Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 Cl 1.80303 * 109.47153 * 300.00123 * 20 19 18 22 22 Cl 1.80298 * 109.47559 * 60.00287 * 20 19 18 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.09003 * 109.47206 * 180.02562 * 20 19 18 34 34 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 17 0.7750 -12.0421 -1.2765 22 17 -1.8461 -10.7059 -1.3909 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 0.3769 -9.4904 -0.2452 31 1 -0.1993 -8.8909 -2.9441 32 1 1.3856 -9.6982 -2.8752 33 1 -0.4370 -11.3432 -3.2234 34 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288783688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -61.496119 kcal Electronic energy + Delta-G solvation = -20820.331341 eV Core-core repulsion = 17191.521980 eV Total energy + Delta-G solvation = -3628.809360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90527 -38.78836 -37.41196 -36.44714 -36.42416 -34.94295 -32.40899 -32.04468 -30.35572 -29.10402 -26.96899 -25.20555 -23.35784 -21.64840 -21.25571 -20.29609 -17.68967 -17.22183 -16.96237 -16.55202 -16.45798 -15.28007 -14.96144 -14.89206 -14.34173 -14.28468 -14.20686 -13.59270 -13.45634 -13.32777 -12.93942 -12.52132 -12.35964 -11.80295 -11.66303 -11.51390 -11.48287 -11.25360 -11.23722 -11.02110 -10.78774 -10.74396 -10.57307 -10.40962 -9.83304 -9.31777 -9.28562 -8.78836 -8.01735 -7.16452 -6.39337 -3.98255 0.85977 1.48583 2.12517 2.44454 2.71671 2.99408 3.16803 3.16998 3.21797 3.60887 4.01094 4.14086 4.57578 4.89380 4.92958 5.05422 5.15620 5.20882 5.32747 5.54044 5.70739 5.79984 5.98428 6.11834 6.22863 6.39231 6.70718 6.97090 7.12562 7.30383 7.31776 7.42255 7.49489 7.88186 8.05891 8.22300 9.06520 9.77833 10.79033 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.002498 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.110023 B =11207.105857 C =11938.136768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.519 3.481 17 O -0.516 6.516 18 N -0.737 5.737 19 C 0.113 3.887 20 C 0.048 3.952 21 Cl -0.133 7.133 22 Cl -0.129 7.129 23 C -0.174 4.174 24 H 0.269 0.731 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.403 0.597 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 -23.188 -1.873 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.034 4.034 15 C -0.133 4.133 16 C 0.306 3.694 17 O -0.389 6.389 18 N -0.394 5.394 19 C -0.012 4.012 20 C -0.022 4.022 21 Cl -0.107 7.107 22 Cl -0.103 7.103 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.238 0.762 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.053 -22.569 -2.493 22.706 hybrid contribution 0.292 0.420 0.354 0.621 sum 0.239 -22.149 -2.139 22.254 Atomic orbital electron populations 1.70046 1.05930 1.27524 1.46508 1.25273 0.95831 0.98763 0.96688 0.85723 0.78902 0.80182 0.78678 1.19928 1.20302 1.19230 1.21314 0.91770 0.80870 1.52714 0.89142 1.83976 1.34231 1.11367 1.78803 1.19274 0.90241 0.87962 0.92390 1.21182 0.93845 0.98995 1.10907 1.20675 0.98366 0.92333 0.97972 1.20346 0.93290 0.96890 1.10962 1.18646 0.93222 0.91705 0.99859 1.20576 1.02786 0.95912 0.93978 1.20767 0.76601 0.79785 0.92245 1.90774 1.48959 1.59252 1.39915 1.45975 1.63617 1.21936 1.07864 1.21792 1.01624 0.90309 0.87483 1.27500 0.83956 0.94464 0.96250 1.98801 1.69331 1.66174 1.76358 1.98810 1.32631 1.97414 1.81457 1.19947 0.99069 0.89981 1.10369 0.92121 0.85636 0.87495 0.87933 0.88230 0.88072 0.76163 0.88346 0.88459 0.83306 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.18 9.49 30.89 0.29 -10.89 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 10 C 0.15 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.23 -5.22 9.17 -39.39 -0.36 -5.59 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.20 -3.54 9.70 -39.54 -0.38 -3.92 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.09 -1.21 5.83 -29.03 -0.17 -1.38 16 16 C 0.52 7.14 7.82 -10.99 -0.09 7.05 16 17 O -0.52 -9.54 16.03 5.56 0.09 -9.45 16 18 N -0.74 -7.06 5.07 -60.30 -0.31 -7.37 16 19 C 0.11 0.88 5.43 -4.05 -0.02 0.85 16 20 C 0.05 0.27 4.11 37.15 0.15 0.42 16 21 Cl -0.13 -0.90 28.08 -51.86 -1.46 -2.36 16 22 Cl -0.13 -0.95 28.08 -51.86 -1.46 -2.40 16 23 C -0.17 -3.83 9.65 -39.40 -0.38 -4.21 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 26 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 27 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 29 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.40 3.12 7.68 -40.82 -0.31 2.81 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.15 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -34.56 330.92 -7.97 -42.53 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.39 Total: 4.51 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -2.17 Total: -15.98 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.45 Total: -32.44 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -2.91 Total: -4.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.56 -7.97 -42.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288783688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.965 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds