Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 Cl 1.80303 * 109.47153 * 300.00123 * 20 19 18 22 22 Cl 1.80298 * 109.47559 * 60.00287 * 20 19 18 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.09003 * 109.47206 * 180.02562 * 20 19 18 34 34 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 17 0.7750 -12.0421 -1.2765 22 17 -1.8461 -10.7059 -1.3909 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 0.3769 -9.4904 -0.2452 31 1 -0.1993 -8.8909 -2.9441 32 1 1.3856 -9.6982 -2.8752 33 1 -0.4370 -11.3432 -3.2234 34 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288783688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = -84.874514 kcal Electronic energy + Delta-G solvation = -20821.345104 eV Core-core repulsion = 17191.521980 eV Total energy + Delta-G solvation = -3629.823124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.14699 -40.40320 -38.32378 -37.87489 -36.94863 -35.83276 -34.33475 -33.53060 -31.30710 -30.72853 -28.30585 -27.21618 -24.13544 -23.23752 -22.67369 -21.56985 -19.51168 -18.81248 -18.16570 -17.38726 -17.24022 -16.74290 -16.47613 -16.11348 -15.74122 -15.55472 -15.51913 -15.01334 -14.87556 -14.34001 -14.25897 -13.96537 -13.73965 -13.53034 -12.96364 -12.76018 -12.46149 -12.38122 -12.22585 -12.20429 -12.09658 -12.05183 -11.79244 -11.55139 -11.19337 -11.01776 -10.78943 -10.21909 -9.62488 -8.96337 -8.46234 -6.14694 0.34975 0.53489 0.77581 0.98507 1.34451 1.44222 1.52442 1.65216 2.10164 2.18532 2.85789 3.03176 3.18975 3.45587 3.76532 3.81651 4.09598 4.12811 4.27766 4.34010 4.45806 4.52231 4.60552 4.66286 4.75744 5.08124 5.14087 5.26821 5.32872 5.66722 5.74476 5.77052 6.03921 6.24349 6.43797 6.98422 7.22166 7.80385 8.77423 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025798 B = 0.002498 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.110023 B =11207.105857 C =11938.136768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.025 4.025 15 C -0.093 4.093 16 C 0.522 3.478 17 O -0.571 6.571 18 N -0.720 5.720 19 C 0.108 3.892 20 C 0.061 3.939 21 Cl -0.138 7.138 22 Cl -0.143 7.143 23 C -0.193 4.193 24 H 0.272 0.728 25 H 0.117 0.883 26 H 0.145 0.855 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.120 0.880 30 H 0.414 0.586 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 -25.789 -1.485 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.062 3.938 11 C -0.266 4.266 12 C -0.092 4.092 13 C -0.198 4.198 14 C -0.026 4.026 15 C -0.132 4.132 16 C 0.310 3.690 17 O -0.449 6.449 18 N -0.375 5.375 19 C -0.016 4.016 20 C -0.009 4.009 21 Cl -0.112 7.112 22 Cl -0.117 7.117 23 C -0.212 4.212 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.138 0.862 30 H 0.252 0.748 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.198 0.802 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.857 -25.271 -2.079 25.424 hybrid contribution -0.221 0.845 0.244 0.907 sum 1.636 -24.426 -1.834 24.549 Atomic orbital electron populations 1.70194 1.08035 1.28735 1.49134 1.26608 0.96883 1.02736 0.95911 0.84578 0.77832 0.74506 0.79219 1.18916 1.19405 1.17595 1.21821 0.92486 0.81513 1.53158 0.88256 1.83934 1.35927 1.12569 1.81773 1.19875 0.91659 0.87909 0.94364 1.21303 0.93139 1.00265 1.11878 1.21131 1.00217 0.91495 0.96334 1.20974 0.93487 0.98030 1.07282 1.19173 0.93756 0.92777 0.96900 1.20702 1.04276 0.93722 0.94539 1.20776 0.76282 0.80369 0.91606 1.90770 1.51765 1.60922 1.41475 1.45805 1.61774 1.20643 1.09294 1.21921 1.02092 0.91233 0.86368 1.27610 0.82735 0.93239 0.97308 1.98808 1.69488 1.66216 1.76658 1.98817 1.33590 1.97447 1.81840 1.20221 0.99277 0.90485 1.11213 0.91872 0.86511 0.83721 0.83449 0.83879 0.86170 0.74802 0.88886 0.87998 0.80162 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.18 13.67 21.61 0.30 -57.88 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 8 H 0.10 5.54 5.21 -2.91 -0.02 5.53 16 9 O -0.23 -14.82 9.76 -22.74 -0.22 -15.04 16 10 C 0.11 5.90 6.65 22.58 0.15 6.05 16 11 C -0.25 -11.39 9.17 22.39 0.21 -11.19 16 12 C -0.07 -2.68 10.04 22.25 0.22 -2.46 16 13 C -0.18 -5.83 9.70 22.30 0.22 -5.61 16 14 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 15 C -0.09 -2.12 5.83 29.10 0.17 -1.95 16 16 C 0.52 13.13 7.82 87.66 0.69 13.82 16 17 O -0.57 -20.55 16.03 -3.04 -0.05 -20.59 16 18 N -0.72 -11.90 5.07 -463.07 -2.35 -14.25 16 19 C 0.11 1.45 5.43 86.38 0.47 1.92 16 20 C 0.06 0.52 4.11 71.98 0.30 0.82 16 21 Cl -0.14 -1.49 28.08 -2.72 -0.08 -1.57 16 22 Cl -0.14 -1.81 28.08 -2.72 -0.08 -1.89 16 23 C -0.19 -8.69 9.65 22.39 0.22 -8.47 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 26 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 29 H 0.12 2.34 8.08 -2.39 -0.02 2.32 16 30 H 0.41 5.09 7.68 -92.71 -0.71 4.38 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.18 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -81.94 330.92 3.64 -78.30 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.44 Total: 20.20 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.65 Total: -33.41 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -2.05 Total: -72.13 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.27 Total: -35.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.15 Total: -3.46 kcal Total: -81.94 3.64 -78.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288783688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.577 kcal (2) G-P(sol) polarization free energy of solvation -81.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds