Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 C 1.50701 * 109.46735 * 270.01882 * 14 13 12 16 16 O 1.21287 * 120.00263 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99892 * 180.02562 * 15 14 13 18 18 C 1.46494 * 119.99938 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46938 * 179.97438 * 18 17 15 20 20 Cl 1.80303 * 109.46791 * 299.99694 * 19 18 17 21 21 Cl 1.80295 * 109.47070 * 59.99653 * 19 18 17 22 22 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 23 23 C 1.38101 * 120.07071 * 359.95556 * 22 13 12 24 24 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 27 27 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 28 28 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 29 29 H 0.97005 * 119.99650 * 359.97438 * 17 15 14 30 30 H 1.09003 * 109.47073 * 299.99723 * 18 17 15 31 31 H 1.08996 * 109.47496 * 60.00083 * 18 17 15 32 32 H 1.08995 * 109.46974 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.96326 * 179.97438 * 22 13 12 34 34 H 1.07997 * 120.03156 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 6 6.2643 -6.7081 -0.9280 16 8 5.9869 -6.0494 -1.9079 17 7 6.8867 -7.8954 -1.0682 18 6 7.2285 -8.3900 -2.4041 19 6 7.9229 -9.7480 -2.2828 20 17 9.4273 -9.5685 -1.3053 21 17 6.8163 -10.9188 -1.4734 22 6 3.8531 -4.7987 0.2042 23 6 3.2232 -3.5745 0.0950 24 1 -0.4849 0.8401 0.0004 25 1 5.9419 -1.5655 0.2316 26 1 7.0534 -3.7517 0.4353 27 1 6.8228 -6.0905 1.0369 28 1 5.2443 -6.9068 0.9360 29 1 7.1090 -8.4220 -0.2844 30 1 6.3191 -8.4980 -2.9952 31 1 7.8980 -7.6825 -2.8932 32 1 8.1769 -10.1162 -3.2768 33 1 3.2703 -5.7080 0.1940 34 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289172173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = -82.067089 kcal Electronic energy + Delta-G solvation = -20721.618189 eV Core-core repulsion = 17091.916805 eV Total energy + Delta-G solvation = -3629.701385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15211 -40.47849 -38.42760 -37.87631 -36.93755 -35.79267 -34.51578 -33.12626 -31.79900 -31.01174 -28.30468 -26.75220 -23.99793 -23.68451 -22.43077 -21.36972 -19.81198 -19.10925 -18.12971 -17.52157 -17.20606 -16.69207 -16.32732 -15.93310 -15.67757 -15.54509 -15.42544 -15.09799 -14.92416 -14.36038 -14.25243 -14.21670 -14.05667 -13.63047 -13.03942 -12.76562 -12.49953 -12.42988 -12.29476 -12.20846 -12.03973 -11.92469 -11.78204 -11.53728 -11.26974 -10.99796 -10.84154 -10.18040 -9.77440 -8.97260 -8.50126 -6.22561 0.36306 0.60023 0.62937 0.99724 1.30727 1.35592 1.51493 1.71047 2.14079 2.28194 2.78693 3.05031 3.07470 3.18277 3.78376 3.85156 4.04843 4.14009 4.19855 4.30286 4.48954 4.54993 4.59522 4.71491 4.83222 4.99731 5.26614 5.31402 5.38598 5.57813 5.75242 5.80872 5.92067 6.25487 6.48956 6.84208 7.27962 7.59293 8.61726 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.035602 B = 0.002298 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.294913 B =12182.121621 C =12554.029019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.118 3.882 11 C -0.194 4.194 12 C -0.058 4.058 13 C -0.137 4.137 14 C -0.082 4.082 15 C 0.518 3.482 16 O -0.573 6.573 17 N -0.721 5.721 18 C 0.109 3.891 19 C 0.060 3.940 20 Cl -0.140 7.140 21 Cl -0.142 7.142 22 C -0.064 4.064 23 C -0.239 4.239 24 H 0.285 0.715 25 H 0.127 0.873 26 H 0.154 0.846 27 H 0.134 0.866 28 H 0.125 0.875 29 H 0.414 0.586 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.179 0.821 33 H 0.133 0.867 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.666 -23.531 -1.450 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.069 3.931 11 C -0.213 4.213 12 C -0.076 4.076 13 C -0.138 4.138 14 C -0.121 4.121 15 C 0.306 3.694 16 O -0.451 6.451 17 N -0.377 5.377 18 C -0.016 4.016 19 C -0.009 4.009 20 Cl -0.113 7.113 21 Cl -0.116 7.116 22 C -0.082 4.082 23 C -0.258 4.258 24 H 0.094 0.906 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.251 0.749 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.196 0.804 33 H 0.150 0.850 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.403 -22.816 -2.041 30.676 hybrid contribution -0.533 0.426 0.189 0.708 sum 19.870 -22.390 -1.852 29.993 Atomic orbital electron populations 1.69734 1.06902 1.29590 1.50318 1.25300 0.95916 1.02191 0.95535 0.85198 0.78823 0.77322 0.79245 1.19219 1.19016 1.18617 1.20716 0.78176 0.96107 1.52584 0.90319 1.83506 1.21191 1.27495 1.83224 1.19685 0.93270 0.85053 0.95051 1.20505 0.90557 0.99869 1.10360 1.20944 1.00220 0.90233 0.96237 1.19284 0.92703 0.94964 1.06845 1.20551 1.03799 0.93964 0.93780 1.21023 0.76128 0.80221 0.92003 1.90770 1.54180 1.57970 1.42184 1.45854 1.61274 1.21362 1.09187 1.21897 1.01277 0.91907 0.86486 1.27611 0.83575 0.92417 0.97340 1.98811 1.39151 1.97775 1.75612 1.98814 1.66173 1.63439 1.83133 1.20909 0.94889 0.96048 0.96381 1.21246 1.00087 0.93366 1.11104 0.90566 0.85454 0.82885 0.84836 0.85693 0.74850 0.88675 0.88367 0.80356 0.84952 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.54 13.96 21.61 0.30 -56.23 16 2 C 0.01 0.52 5.49 84.83 0.47 0.98 16 3 Si 0.97 46.67 28.62 68.60 1.96 48.63 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.40 -24.39 9.95 67.92 0.68 -23.72 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -13.96 8.59 -22.72 -0.20 -14.15 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 C -0.19 -7.78 9.99 22.39 0.22 -7.55 16 12 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16 13 C -0.14 -4.11 4.38 -19.83 -0.09 -4.20 16 14 C -0.08 -1.50 5.83 29.10 0.17 -1.33 16 15 C 0.52 11.10 7.82 87.66 0.69 11.79 16 16 O -0.57 -18.53 16.03 -3.05 -0.05 -18.58 16 17 N -0.72 -9.79 5.07 -463.04 -2.35 -12.14 16 18 C 0.11 1.20 5.43 86.38 0.47 1.67 16 19 C 0.06 0.40 4.11 71.98 0.30 0.70 16 20 Cl -0.14 -1.33 28.08 -2.72 -0.08 -1.41 16 21 Cl -0.14 -1.44 28.08 -2.72 -0.08 -1.52 16 22 C -0.06 -2.32 9.69 22.25 0.22 -2.10 16 23 C -0.24 -11.07 9.17 22.39 0.21 -10.87 16 24 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 26 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 27 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 28 H 0.13 1.68 8.08 -2.38 -0.02 1.66 16 29 H 0.41 3.92 7.68 -92.70 -0.71 3.21 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.18 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 34 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 Total: -1.00 -77.31 329.79 3.64 -73.67 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.44 Total: 12.03 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.69 Total: -30.31 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -2.05 Total: -68.37 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.24 Total: -32.73 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.96 Total: 48.63 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.15 Total: -2.93 kcal Total: -77.31 3.64 -73.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289172173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.399 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds