Wall clock time and date at job start Tue Mar 31 2020 11:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99594 * 2 1 4 4 C 1.38535 * 120.06713 * 0.02562 * 3 2 1 5 5 C 1.38346 * 120.01428 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.92533 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.14117 * 359.97438 * 5 4 3 8 8 Cl 1.73604 * 119.93800 * 180.02562 * 7 5 4 9 9 C 1.38292 * 120.12769 * 0.02562 * 7 5 4 10 10 C 1.38711 * 119.98345 * 359.73114 * 9 7 5 11 11 N 1.40166 * 120.07382 * 180.27328 * 10 9 7 12 12 C 1.34776 * 119.99848 * 24.80653 * 11 10 9 13 13 O 1.21298 * 119.99961 * 5.53119 * 12 11 10 14 14 C 1.50698 * 120.00317 * 185.53132 * 12 11 10 15 15 C 1.53003 * 109.47287 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46989 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99930 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99639 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00335 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47252 * 119.99668 * 20 18 16 23 23 H 1.48492 * 109.47550 * 240.00007 * 20 18 16 24 24 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99728 * 1 2 3 26 26 H 1.09001 * 109.46903 * 299.99982 * 1 2 3 27 27 H 1.08000 * 119.99413 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.00592 * 179.97438 * 9 7 5 29 29 H 0.97000 * 120.00709 * 204.79905 * 11 10 9 30 30 H 1.08997 * 109.47314 * 299.99810 * 14 12 11 31 31 H 1.09004 * 109.46584 * 59.99865 * 14 12 11 32 32 H 1.08997 * 109.47174 * 300.00368 * 15 14 12 33 33 H 1.08996 * 109.46971 * 60.00259 * 15 14 12 34 34 H 0.97000 * 120.00098 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3744 0.0005 5 6 1.9222 3.6065 0.0011 6 17 0.9761 5.0620 0.0011 7 6 3.3049 3.6812 0.0016 8 17 4.0889 5.2302 0.0030 9 6 4.0626 2.5243 0.0011 10 6 3.4373 1.2862 0.0056 11 7 4.2033 0.1124 0.0109 12 6 5.4585 0.1291 0.5014 13 8 5.8901 1.1324 1.0293 14 6 6.3260 -1.0985 0.3941 15 6 7.6917 -0.8145 1.0227 16 6 8.5589 -2.0424 0.9159 17 1 8.1745 -2.9358 0.4463 18 6 9.8429 -2.0253 1.4178 19 7 10.3108 -0.9376 1.9902 20 14 10.9176 -3.5475 1.2861 21 1 10.1620 -4.6294 0.6052 22 1 12.1367 -3.2264 0.5013 23 1 11.3086 -3.9967 2.6464 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2145 2.3190 0.0005 28 1 5.1409 2.5849 0.0011 29 1 3.8301 -0.7120 -0.3384 30 1 5.8496 -1.9270 0.9182 31 1 6.4570 -1.3600 -0.6560 32 1 8.1679 0.0138 0.4983 33 1 7.5610 -0.5527 2.0727 34 1 11.2142 -0.9254 2.3430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292845529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:52 Heat of formation + Delta-G solvation = -67.276146 kcal Electronic energy + Delta-G solvation = -21144.441922 eV Core-core repulsion = 17515.381920 eV Total energy + Delta-G solvation = -3629.060001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99651 -39.34224 -37.99691 -36.65697 -36.33179 -34.52363 -33.56520 -31.32330 -30.43425 -29.61749 -27.57318 -25.84244 -23.46523 -22.66774 -21.49527 -19.87123 -18.75965 -17.64466 -17.22202 -16.51814 -16.18369 -15.85033 -15.62011 -15.18745 -14.66776 -14.45278 -14.15299 -14.03676 -13.52999 -13.12938 -12.74260 -12.56076 -12.24235 -12.16835 -11.99624 -11.89132 -11.31327 -11.21961 -11.05368 -10.97970 -10.95691 -10.62072 -10.18731 -10.04820 -9.75530 -9.33391 -9.12537 -8.81061 -8.37051 -7.92078 -6.00375 -4.05149 0.73970 0.88613 1.70207 2.06424 2.78386 2.81477 3.16441 3.30524 3.38020 3.39689 3.41217 4.35346 4.43989 4.57703 4.77334 4.79929 4.90825 5.12161 5.17108 5.35042 5.37288 5.46310 5.55186 5.77506 6.06172 6.08581 6.15459 6.50183 6.75868 6.94261 7.52376 7.68904 7.77490 8.00454 8.28844 8.45165 9.02703 9.58956 11.10485 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.003009 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.563825 B = 9303.825065 C =10662.686162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.105 3.895 4 C -0.169 4.169 5 C -0.021 4.021 6 Cl -0.053 7.053 7 C -0.038 4.038 8 Cl -0.046 7.046 9 C -0.084 4.084 10 C 0.157 3.843 11 N -0.672 5.672 12 C 0.509 3.491 13 O -0.509 6.509 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.417 0.583 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.286 6.383 -6.437 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.057 3.943 4 C -0.190 4.190 5 C -0.050 4.050 6 Cl -0.024 7.024 7 C -0.067 4.067 8 Cl -0.017 7.017 9 C -0.106 4.106 10 C 0.059 3.941 11 N -0.317 5.317 12 C 0.300 3.700 13 O -0.382 6.382 14 C -0.168 4.168 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.122 0.878 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.253 0.747 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.654 7.179 -5.962 24.501 hybrid contribution 0.057 -0.791 -0.164 0.810 sum -22.596 6.388 -6.126 24.268 Atomic orbital electron populations 1.23134 0.77711 1.04428 1.01592 1.86069 1.21881 1.25432 1.88892 1.18516 0.90209 0.84862 1.00689 1.20738 1.00574 0.89371 1.08279 1.20324 0.89749 0.88294 1.06589 1.98373 1.71829 1.35417 1.96828 1.20436 0.90292 0.88433 1.07514 1.98385 1.80363 1.26131 1.96816 1.21255 1.02781 0.87747 0.98786 1.17097 0.86822 0.87899 1.02234 1.43892 1.15038 1.10379 1.62400 1.21976 0.80348 0.92002 0.75684 1.90652 1.72170 1.34612 1.40799 1.21934 0.98376 0.92953 1.03495 1.18940 0.87336 0.97232 0.96667 1.21216 0.98215 0.98449 1.38769 0.92468 1.25020 0.98031 0.96093 0.95202 1.69999 1.16779 1.27216 1.38677 0.86529 0.80518 0.83124 0.77749 1.19730 1.20997 1.21003 0.87762 0.92379 0.92337 0.83380 0.80710 0.74657 0.89641 0.89518 0.95614 0.95627 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.03 9.91 -19.71 -0.20 -3.22 16 3 C 0.11 1.21 6.70 -39.08 -0.26 0.95 16 4 C -0.17 -1.74 8.81 -39.43 -0.35 -2.09 16 5 C -0.02 -0.25 6.32 -39.46 -0.25 -0.49 16 6 Cl -0.05 -0.56 27.94 -51.86 -1.45 -2.01 16 7 C -0.04 -0.52 6.32 -39.48 -0.25 -0.77 16 8 Cl -0.05 -0.61 27.94 -51.86 -1.45 -2.06 16 9 C -0.08 -1.27 8.50 -39.39 -0.33 -1.60 16 10 C 0.16 2.19 6.45 -83.48 -0.54 1.65 16 11 N -0.67 -9.40 5.29 -9.74 -0.05 -9.45 16 12 C 0.51 9.16 7.64 -10.99 -0.08 9.07 16 13 O -0.51 -11.00 13.15 5.54 0.07 -10.93 16 14 C -0.13 -2.41 5.64 -27.88 -0.16 -2.57 16 15 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 16 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 27 H 0.15 1.10 6.30 -52.49 -0.33 0.77 16 28 H 0.18 3.01 5.79 -52.49 -0.30 2.70 16 29 H 0.42 4.63 8.34 -40.82 -0.34 4.29 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -32.37 325.83 -7.63 -40.00 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.42 Total: -0.18 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.76 Total: -7.19 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.68 Total: -35.58 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.12 Total: -14.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -2.90 Total: -4.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.37 -7.63 -40.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292845529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.278 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds