Wall clock time and date at job start Tue Mar 31 2020 11:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35990 * 116.99594 * 2 1 4 4 C 1.38535 * 120.06713 * 0.02562 * 3 2 1 5 5 C 1.38346 * 120.01428 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.92533 * 179.97438 * 5 4 3 7 7 C 1.38472 * 120.14117 * 359.97438 * 5 4 3 8 8 Cl 1.73604 * 119.93800 * 180.02562 * 7 5 4 9 9 C 1.38292 * 120.12769 * 0.02562 * 7 5 4 10 10 C 1.38711 * 119.98345 * 359.73114 * 9 7 5 11 11 N 1.40166 * 120.07382 * 180.27328 * 10 9 7 12 12 C 1.34776 * 119.99848 * 24.80653 * 11 10 9 13 13 O 1.21298 * 119.99961 * 5.53119 * 12 11 10 14 14 C 1.50698 * 120.00317 * 185.53132 * 12 11 10 15 15 C 1.53003 * 109.47287 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46989 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99930 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99639 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00335 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47252 * 119.99668 * 20 18 16 23 23 H 1.48492 * 109.47550 * 240.00007 * 20 18 16 24 24 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46947 * 59.99728 * 1 2 3 26 26 H 1.09001 * 109.46903 * 299.99982 * 1 2 3 27 27 H 1.08000 * 119.99413 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.00592 * 179.97438 * 9 7 5 29 29 H 0.97000 * 120.00709 * 204.79905 * 11 10 9 30 30 H 1.08997 * 109.47314 * 299.99810 * 14 12 11 31 31 H 1.09004 * 109.46584 * 59.99865 * 14 12 11 32 32 H 1.08997 * 109.47174 * 300.00368 * 15 14 12 33 33 H 1.08996 * 109.46971 * 60.00259 * 15 14 12 34 34 H 0.97000 * 120.00098 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3744 0.0005 5 6 1.9222 3.6065 0.0011 6 17 0.9761 5.0620 0.0011 7 6 3.3049 3.6812 0.0016 8 17 4.0889 5.2302 0.0030 9 6 4.0626 2.5243 0.0011 10 6 3.4373 1.2862 0.0056 11 7 4.2033 0.1124 0.0109 12 6 5.4585 0.1291 0.5014 13 8 5.8901 1.1324 1.0293 14 6 6.3260 -1.0985 0.3941 15 6 7.6917 -0.8145 1.0227 16 6 8.5589 -2.0424 0.9159 17 1 8.1745 -2.9358 0.4463 18 6 9.8429 -2.0253 1.4178 19 7 10.3108 -0.9376 1.9902 20 14 10.9176 -3.5475 1.2861 21 1 10.1620 -4.6294 0.6052 22 1 12.1367 -3.2264 0.5013 23 1 11.3086 -3.9967 2.6464 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2145 2.3190 0.0005 28 1 5.1409 2.5849 0.0011 29 1 3.8301 -0.7120 -0.3384 30 1 5.8496 -1.9270 0.9182 31 1 6.4570 -1.3600 -0.6560 32 1 8.1679 0.0138 0.4983 33 1 7.5610 -0.5527 2.0727 34 1 11.2142 -0.9254 2.3430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292845529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:51 Heat of formation + Delta-G solvation = -88.063947 kcal Electronic energy + Delta-G solvation = -21145.343348 eV Core-core repulsion = 17515.381920 eV Total energy + Delta-G solvation = -3629.961428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04970 -40.52441 -38.90805 -37.60306 -37.36875 -35.75764 -35.55339 -33.13250 -31.45618 -30.70475 -28.24048 -27.65512 -24.80040 -23.68931 -23.03519 -21.29455 -19.70432 -18.88910 -18.55570 -17.94820 -17.22416 -16.84979 -16.76278 -16.49773 -16.43775 -15.61983 -15.15462 -15.00923 -14.97323 -14.33836 -14.17046 -13.98995 -13.59306 -13.23094 -13.04455 -12.95888 -12.83696 -12.50739 -12.43751 -12.23610 -11.96903 -11.93846 -11.91195 -11.63749 -11.27428 -11.22073 -10.77737 -10.55930 -9.82203 -8.93876 -8.16867 -6.30258 -0.27190 -0.08458 0.74592 1.07685 1.43997 1.44722 1.49544 1.57932 1.88706 2.13260 2.34282 2.44675 3.16917 3.45825 3.73905 3.77165 4.03408 4.22216 4.40970 4.44801 4.46715 4.52825 4.53401 4.56612 4.75392 4.84848 5.03120 5.07588 5.40406 5.52513 5.64160 5.86632 6.13816 6.18473 6.35400 6.87894 7.10352 7.39999 8.95779 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.003009 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.563825 B = 9303.825065 C =10662.686162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.124 3.876 4 C -0.158 4.158 5 C -0.017 4.017 6 Cl -0.039 7.039 7 C -0.054 4.054 8 Cl -0.053 7.053 9 C -0.100 4.100 10 C 0.131 3.869 11 N -0.651 5.651 12 C 0.513 3.487 13 O -0.556 6.556 14 C -0.116 4.116 15 C 0.040 3.960 16 C -0.540 4.540 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.252 1.252 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.185 0.815 28 H 0.145 0.855 29 H 0.432 0.568 30 H 0.111 0.889 31 H 0.112 0.888 32 H -0.014 1.014 33 H -0.015 1.015 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.148 4.397 -7.462 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.075 3.925 4 C -0.178 4.178 5 C -0.045 4.045 6 Cl -0.009 7.009 7 C -0.082 4.082 8 Cl -0.024 7.024 9 C -0.121 4.121 10 C 0.034 3.966 11 N -0.297 5.297 12 C 0.304 3.696 13 O -0.433 6.433 14 C -0.155 4.155 15 C 0.003 3.997 16 C -0.578 4.578 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.175 1.175 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.144 0.856 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.202 0.798 28 H 0.163 0.837 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.005 0.995 33 H 0.004 0.996 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.590 5.164 -7.021 27.033 hybrid contribution 0.769 -0.123 0.142 0.792 sum -24.821 5.041 -6.879 26.245 Atomic orbital electron populations 1.23540 0.75198 1.06439 1.02946 1.86083 1.24366 1.24280 1.88255 1.18426 0.89202 0.86077 0.98777 1.21081 1.02160 0.88064 1.06454 1.20463 0.89163 0.89533 1.05370 1.98382 1.71124 1.34766 1.96674 1.20465 0.91131 0.87781 1.08849 1.98373 1.80719 1.26338 1.96925 1.21011 1.01641 0.89174 1.00310 1.17174 0.88042 0.87101 1.04239 1.43445 1.13632 1.11332 1.61328 1.21681 0.81491 0.90916 0.75549 1.90657 1.73460 1.35989 1.43209 1.21677 0.95059 0.94168 1.04618 1.18719 0.91069 0.95616 0.94319 1.21731 0.98599 0.99360 1.38130 0.90460 1.26103 0.99977 0.99565 0.94770 1.70176 1.17325 1.30031 1.40157 0.85304 0.78260 0.79064 0.77807 1.17522 1.20813 1.20800 0.85645 0.90641 0.91255 0.79826 0.83725 0.72791 0.87073 0.86968 0.99530 0.99641 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -5.13 9.91 -93.44 -0.93 -6.05 16 3 C 0.12 2.56 6.70 22.59 0.15 2.71 16 4 C -0.16 -2.77 8.81 22.37 0.20 -2.57 16 5 C -0.02 -0.36 6.32 22.35 0.14 -0.22 16 6 Cl -0.04 -0.74 27.94 -2.72 -0.08 -0.81 16 7 C -0.05 -1.47 6.32 22.34 0.14 -1.33 16 8 Cl -0.05 -1.43 27.94 -2.72 -0.08 -1.51 16 9 C -0.10 -3.11 8.50 22.40 0.19 -2.92 16 10 C 0.13 3.59 6.45 38.17 0.25 3.84 16 11 N -0.65 -17.83 5.29 -303.11 -1.60 -19.43 16 12 C 0.51 18.89 7.64 87.66 0.67 19.56 16 13 O -0.56 -25.65 13.15 -3.08 -0.04 -25.69 16 14 C -0.12 -4.36 5.64 29.85 0.17 -4.19 16 15 C 0.04 2.17 4.26 29.85 0.13 2.30 16 16 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 18 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 19 N -0.94 -58.75 13.29 21.45 0.28 -58.47 16 20 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 21 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.08 0.32 7.66 -2.39 -0.02 0.30 16 26 H 0.07 0.38 7.66 -2.39 -0.02 0.37 16 27 H 0.18 1.87 6.30 -2.91 -0.02 1.85 16 28 H 0.15 5.43 5.79 -2.91 -0.02 5.42 16 29 H 0.43 8.76 8.34 -92.71 -0.77 7.98 16 30 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 31 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 32 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 33 H -0.01 -0.91 8.10 -2.39 -0.02 -0.92 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -74.37 325.83 3.82 -70.56 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.39 Total: 6.90 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 3.84 Total: -11.26 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.32 Total: -77.90 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.97 Total: -31.74 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.15 Total: -2.32 kcal Total: -74.37 3.82 -70.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292845529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.507 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds