Wall clock time and date at job start Tue Mar 31 2020 11:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47019 * 2 1 4 4 C 1.37097 * 120.00040 * 263.65416 * 3 2 1 5 5 H 1.08002 * 119.99860 * 193.09519 * 4 3 2 6 6 C 1.38945 * 120.00158 * 13.09829 * 4 3 2 7 7 N 1.31416 * 120.00214 * 16.89330 * 6 4 3 8 8 Si 1.86800 * 120.00204 * 196.89939 * 6 4 3 9 9 H 1.48501 * 109.47025 * 59.99298 * 8 6 4 10 10 H 1.48493 * 109.47313 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46665 * 299.99920 * 8 6 4 12 12 C 1.34776 * 119.99852 * 83.65107 * 3 2 1 13 13 O 1.21292 * 119.99981 * 174.97355 * 12 3 2 14 14 C 1.50700 * 120.00226 * 355.25353 * 12 3 2 15 15 H 1.08997 * 109.46892 * 322.61695 * 14 12 3 16 16 O 1.42895 * 109.47334 * 202.61535 * 14 12 3 17 17 C 1.50705 * 109.47277 * 82.61360 * 14 12 3 18 18 C 1.38272 * 119.97933 * 67.76984 * 17 14 12 19 19 C 1.38198 * 120.03244 * 179.72930 * 18 17 14 20 20 C 1.38345 * 120.00778 * 0.54548 * 19 18 17 21 21 Cl 1.73595 * 120.02416 * 179.75157 * 20 19 18 22 22 C 1.38449 * 119.95541 * 359.73010 * 20 19 18 23 23 Cl 1.73600 * 120.01678 * 180.02562 * 22 20 19 24 24 C 1.38204 * 119.97884 * 248.04859 * 17 14 12 25 25 H 1.08993 * 109.47339 * 59.99734 * 1 2 3 26 26 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46893 * 299.99830 * 1 2 3 28 28 H 1.09002 * 109.46893 * 240.00170 * 2 1 3 29 29 H 1.08994 * 109.46858 * 120.00476 * 2 1 3 30 30 H 0.96995 * 120.00248 * 180.02562 * 7 6 4 31 31 H 0.96703 * 114.00155 * 299.99944 * 16 14 12 32 32 H 1.07997 * 119.97352 * 359.97438 * 18 17 14 33 33 H 1.08003 * 119.99616 * 180.25416 * 19 18 17 34 34 H 1.07992 * 120.00685 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3706 1.9838 -1.1800 5 1 2.9234 2.9115 -1.1686 6 6 2.0163 1.4010 -2.3906 7 7 1.0813 0.4782 -2.4269 8 14 2.8692 1.9289 -3.9664 9 1 4.3260 1.6641 -3.8534 10 1 2.3144 1.1618 -5.1104 11 1 2.6456 3.3802 -4.1879 12 6 2.1213 2.0596 1.1601 13 8 2.6104 3.1694 1.1723 14 6 1.6344 1.4366 2.4430 15 1 0.7277 0.8642 2.2476 16 8 1.3530 2.4645 3.3949 17 6 2.6980 0.5210 2.9921 18 6 3.8851 1.0474 3.4670 19 6 4.8589 0.2093 3.9760 20 6 4.6510 -1.1583 4.0003 21 17 5.8766 -2.2120 4.6336 22 6 3.4647 -1.6858 3.5195 23 17 3.2019 -3.4016 3.5498 24 6 2.4885 -0.8449 3.0155 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.8343 0.0711 -3.2719 31 1 2.1165 3.0149 3.6168 32 1 4.0496 2.1146 3.4437 33 1 5.7842 0.6215 4.3506 34 1 1.5632 -1.2559 2.6399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294624117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:12 Heat of formation + Delta-G solvation = -74.084802 kcal Electronic energy + Delta-G solvation = -22531.890257 eV Core-core repulsion = 18902.535010 eV Total energy + Delta-G solvation = -3629.355247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54900 -39.98002 -38.04327 -37.59584 -37.38641 -36.62817 -33.96759 -32.55931 -31.91625 -31.24306 -28.49442 -26.36124 -24.26511 -23.96121 -23.06654 -21.14343 -19.12004 -18.86365 -18.40038 -17.52432 -17.18697 -16.84480 -16.11424 -16.03913 -15.47823 -15.30071 -15.02242 -14.81522 -14.73939 -14.49777 -13.82722 -13.65234 -13.24204 -13.09080 -12.94272 -12.90401 -12.77455 -12.61088 -12.46201 -12.21080 -12.14815 -12.02119 -11.94152 -11.70034 -11.68989 -10.87261 -10.40465 -10.01729 -9.68729 -9.66636 -8.29155 -5.90521 -0.24456 -0.02867 0.73861 1.08440 1.36733 1.43440 1.51879 1.87928 2.22618 2.30136 2.91994 3.04571 3.42085 3.50483 3.55920 3.85212 3.92891 4.07004 4.10335 4.34431 4.44981 4.62491 4.74140 4.86193 4.87566 4.90961 5.12086 5.23282 5.40250 5.43010 5.49886 5.94093 6.04087 6.47291 6.53452 7.14164 7.44685 7.95730 8.64300 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004551 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.047837 B = 6150.515390 C = 6558.813717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.114 3.886 3 N -0.438 5.438 4 C -0.346 4.346 5 H 0.074 0.926 6 C 0.005 3.995 7 N -0.870 5.870 8 Si 0.982 3.018 9 H -0.274 1.274 10 H -0.269 1.269 11 H -0.278 1.278 12 C 0.407 3.593 13 O -0.628 6.628 14 C 0.149 3.851 15 H 0.132 0.868 16 O -0.541 6.541 17 C -0.099 4.099 18 C -0.093 4.093 19 C -0.089 4.089 20 C -0.035 4.035 21 Cl -0.043 7.043 22 C -0.035 4.035 23 Cl -0.042 7.042 24 C -0.088 4.088 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.274 0.726 31 H 0.388 0.612 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -8.454 11.545 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.009 4.009 3 N -0.155 5.155 4 C -0.474 4.474 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.508 5.508 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.204 1.204 12 C 0.195 3.805 13 O -0.517 6.517 14 C 0.086 3.914 15 H 0.149 0.851 16 O -0.347 6.347 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.063 4.063 21 Cl -0.014 7.014 22 C -0.062 4.062 23 Cl -0.013 7.013 24 C -0.106 4.106 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.238 0.762 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.819 -8.589 11.408 14.782 hybrid contribution 0.838 0.386 -0.972 1.340 sum 4.656 -8.204 10.436 14.067 Atomic orbital electron populations 1.22105 0.95399 1.01663 1.01149 1.21737 0.95527 0.82026 1.01598 1.44005 1.54268 1.12078 1.05176 1.19619 1.35049 1.08882 0.83810 0.90815 1.25880 0.95801 0.96854 1.01298 1.70130 1.25822 1.27021 1.27839 0.85161 0.78593 0.78218 0.77361 1.19928 1.19341 1.20370 1.21246 0.85876 0.86647 0.86687 1.90470 1.51570 1.22644 1.86979 1.20650 0.97572 0.87456 0.85710 0.85117 1.86526 1.40919 1.46924 1.60366 1.20352 0.96496 0.94089 0.99116 1.21217 0.92073 1.01486 0.96340 1.21217 1.00785 0.89871 0.98915 1.20913 0.90607 0.92269 1.02490 1.98380 1.52733 1.65469 1.84813 1.20737 0.95042 0.86582 1.03884 1.98383 1.96402 1.09495 1.97055 1.21023 0.99694 0.91518 0.98408 0.91604 0.91195 0.94676 0.89635 0.91851 0.91566 0.76175 0.83857 0.81329 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 9.45 71.98 0.68 -4.88 16 2 C 0.11 4.72 4.95 86.38 0.43 5.15 16 3 N -0.44 -21.46 2.64 -635.54 -1.68 -23.14 16 4 C -0.35 -18.86 9.45 84.04 0.79 -18.07 16 5 H 0.07 4.36 7.28 -2.91 -0.02 4.34 16 6 C 0.00 0.23 5.05 84.92 0.43 0.66 16 7 N -0.87 -42.24 8.22 21.66 0.18 -42.07 16 8 Si 0.98 40.83 29.59 68.60 2.03 42.86 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.41 19.02 6.61 87.66 0.58 19.60 16 13 O -0.63 -33.64 15.97 14.89 0.24 -33.40 16 14 C 0.15 5.31 2.87 29.10 0.08 5.39 16 15 H 0.13 4.42 5.04 -2.39 -0.01 4.41 16 16 O -0.54 -18.70 13.10 -131.02 -1.72 -20.41 16 17 C -0.10 -2.99 4.55 -19.86 -0.09 -3.08 16 18 C -0.09 -2.53 9.09 22.27 0.20 -2.33 16 19 C -0.09 -2.07 9.83 22.29 0.22 -1.85 16 20 C -0.04 -0.85 6.32 22.35 0.14 -0.71 16 21 Cl -0.04 -0.92 27.96 -2.72 -0.08 -1.00 16 22 C -0.03 -0.89 6.32 22.35 0.14 -0.75 16 23 Cl -0.04 -0.98 27.96 -2.72 -0.08 -1.06 16 24 C -0.09 -2.36 7.69 22.29 0.17 -2.19 16 25 H 0.07 2.98 6.21 -2.39 -0.01 2.97 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.03 1.24 6.17 -2.39 -0.01 1.23 16 28 H 0.09 3.93 5.90 -2.39 -0.01 3.92 16 29 H 0.06 2.24 3.94 -2.39 -0.01 2.23 16 30 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 31 H 0.39 11.71 7.55 -74.06 -0.56 11.15 16 32 H 0.14 3.80 7.35 -2.91 -0.02 3.78 16 33 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.16 3.79 7.24 -2.91 -0.02 3.77 16 Total: -1.00 -61.32 310.12 3.30 -58.03 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.62 Total: 23.24 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 3.78 Total: -3.05 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -1.50 Total: -65.20 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -1.48 Total: -53.82 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.06 kcal Total: -61.32 3.30 -58.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294624117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.058 kcal (2) G-P(sol) polarization free energy of solvation -61.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds