Wall clock time and date at job start Tue Mar 31 2020 11:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 119.99430 * 2 1 4 4 C 1.50702 * 109.46970 * 270.00073 * 3 2 1 5 5 H 1.08001 * 119.99968 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99950 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99651 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00197 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46960 * 89.99838 * 8 6 4 10 10 H 1.48491 * 109.47366 * 209.99994 * 8 6 4 11 11 H 1.48505 * 109.47015 * 330.00261 * 8 6 4 12 12 C 1.34771 * 120.00422 * 180.02562 * 2 1 3 13 13 O 1.21274 * 120.00294 * 175.26391 * 12 2 1 14 14 C 1.50707 * 119.99653 * 355.54056 * 12 2 1 15 15 H 1.08992 * 109.47247 * 321.92027 * 14 12 2 16 16 O 1.42898 * 109.46995 * 201.91724 * 14 12 2 17 17 C 1.50699 * 109.47193 * 81.92132 * 14 12 2 18 18 C 1.38266 * 119.98151 * 70.92898 * 17 14 12 19 19 C 1.38206 * 120.03919 * 179.73171 * 18 17 14 20 20 C 1.38347 * 119.99957 * 0.54341 * 19 18 17 21 21 Cl 1.73598 * 120.02351 * 179.75434 * 20 19 18 22 22 C 1.38446 * 119.95815 * 359.72768 * 20 19 18 23 23 Cl 1.73601 * 120.01623 * 180.02562 * 22 20 19 24 24 C 1.38203 * 119.98510 * 251.20543 * 17 14 12 25 25 H 1.09008 * 109.46840 * 264.79809 * 1 2 3 26 26 H 1.08998 * 109.47714 * 24.80035 * 1 2 3 27 27 H 1.09002 * 109.46908 * 144.80323 * 1 2 3 28 28 H 1.08994 * 109.47403 * 29.99953 * 3 2 1 29 29 H 1.09000 * 109.46658 * 150.00805 * 3 2 1 30 30 H 0.97003 * 119.99503 * 179.97438 * 7 6 4 31 31 H 0.96697 * 114.00093 * 300.00389 * 16 14 12 32 32 H 1.08006 * 119.98310 * 359.97438 * 18 17 14 33 33 H 1.08003 * 120.00394 * 180.24950 * 19 18 17 34 34 H 1.08009 * 119.99444 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1266 2.8776 -1.6728 7 7 3.5539 3.6177 -0.6732 8 14 3.4385 3.4166 -3.4340 9 1 2.3088 4.2597 -3.9010 10 1 4.6990 4.1991 -3.4963 11 1 3.5556 2.2192 -4.3047 12 6 2.1390 -1.1671 -0.0005 13 8 3.3486 -1.1688 -0.0872 14 6 1.3889 -2.4703 0.1004 15 1 0.5513 -2.3551 0.7882 16 8 2.2665 -3.4887 0.5848 17 6 0.8715 -2.8588 -1.2606 18 6 1.7517 -3.2810 -2.2398 19 6 1.2779 -3.6428 -3.4867 20 6 -0.0766 -3.5721 -3.7592 21 17 -0.6717 -4.0204 -5.3272 22 6 -0.9573 -3.1440 -2.7805 23 17 -2.6574 -3.0553 -3.1207 24 6 -0.4819 -2.7875 -1.5313 25 1 -0.3633 -0.0932 1.0235 26 1 -0.3634 0.9328 -0.4310 27 1 -0.3633 -0.8398 -0.5923 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5137 30 1 4.0313 4.4433 -0.8505 31 1 3.0363 -3.6454 0.0209 32 1 2.8098 -3.3317 -2.0290 33 1 1.9655 -3.9763 -4.2498 34 1 -1.1684 -2.4530 -0.7674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294680641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:55 Heat of formation + Delta-G solvation = -90.100614 kcal Electronic energy + Delta-G solvation = -22088.572562 eV Core-core repulsion = 18458.522818 eV Total energy + Delta-G solvation = -3630.049744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66214 -40.08424 -38.00415 -37.60920 -37.26266 -36.50900 -34.78723 -32.83088 -31.94735 -30.07229 -28.21559 -27.11461 -24.84233 -24.18938 -23.02498 -20.60754 -19.08758 -18.67132 -18.50784 -17.77028 -17.25255 -16.97598 -16.48550 -16.18665 -15.81844 -15.22571 -15.08699 -14.85678 -14.75554 -14.32935 -13.87802 -13.73687 -13.47603 -13.16658 -13.15125 -12.96297 -12.89062 -12.79575 -12.57587 -12.52826 -12.23984 -12.23063 -11.97547 -11.77934 -11.72659 -10.66230 -10.62563 -10.04256 -9.73186 -9.47395 -8.23572 -6.37417 -0.29062 -0.05504 0.72580 1.07384 1.35442 1.37526 1.47428 1.61997 2.14748 2.27975 2.40899 3.06643 3.31382 3.37207 3.48725 3.58778 3.87415 3.97330 4.06274 4.30315 4.32218 4.59726 4.66312 4.70601 4.87702 4.90986 4.98087 5.14127 5.20190 5.38794 5.52303 5.78348 6.04104 6.37715 6.64613 6.72939 7.21632 7.36848 8.83574 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.004656 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.924166 B = 6011.952726 C = 6914.870433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.599 5.599 3 C 0.258 3.742 4 C -0.538 4.538 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.273 1.273 12 C 0.474 3.526 13 O -0.582 6.582 14 C 0.151 3.849 15 H 0.157 0.843 16 O -0.537 6.537 17 C -0.103 4.103 18 C -0.094 4.094 19 C -0.094 4.094 20 C -0.035 4.035 21 Cl -0.046 7.046 22 C -0.037 4.037 23 Cl -0.041 7.041 24 C -0.082 4.082 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.000 1.000 30 H 0.267 0.733 31 H 0.391 0.609 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 -16.529 -4.248 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.576 4.576 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.261 3.739 13 O -0.463 6.463 14 C 0.088 3.912 15 H 0.174 0.826 16 O -0.343 6.343 17 C -0.105 4.105 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.063 4.063 21 Cl -0.017 7.017 22 C -0.064 4.064 23 Cl -0.012 7.012 24 C -0.100 4.100 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.478 -16.416 -3.938 20.993 hybrid contribution 0.784 0.811 -1.379 1.782 sum -11.694 -15.605 -5.317 20.212 Atomic orbital electron populations 1.22256 0.78015 1.04401 1.03252 1.48152 1.08350 1.06318 1.70213 1.18822 0.91171 0.80243 0.96080 1.21629 1.36689 1.06392 0.92923 0.93073 1.25780 0.94994 0.96486 1.01571 1.70039 1.38953 1.14816 1.32857 0.85510 0.78092 0.78267 0.79561 1.19006 1.20591 1.19806 1.21851 0.88265 0.86989 0.76780 1.90655 1.16267 1.87597 1.51784 1.20716 0.93001 0.83821 0.93665 0.82583 1.86568 1.39330 1.54664 1.53775 1.20228 0.93967 1.00302 0.95974 1.21237 1.00966 0.96632 0.92389 1.21208 0.92990 0.99266 0.97814 1.20978 0.93904 1.03481 0.87895 1.98389 1.88262 1.90758 1.24283 1.20773 0.86355 1.04493 0.94813 1.98394 1.10843 1.96693 1.95220 1.21100 0.94930 0.98322 0.95685 0.89783 0.90920 0.89608 0.95463 0.98223 0.92401 0.75854 0.83908 0.81927 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.72 9.70 127.77 1.24 2.96 16 2 N -0.60 -23.99 2.86 -851.12 -2.43 -26.42 16 3 C 0.26 13.49 5.10 85.63 0.44 13.93 16 4 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.62 5.46 84.66 0.46 1.08 16 7 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.47 18.35 6.77 87.66 0.59 18.94 16 13 O -0.58 -28.15 15.97 15.02 0.24 -27.91 16 14 C 0.15 3.98 2.89 29.10 0.08 4.06 16 15 H 0.16 3.15 7.14 -2.39 -0.02 3.13 16 16 O -0.54 -14.35 13.07 -130.95 -1.71 -16.07 16 17 C -0.10 -2.43 4.61 -19.87 -0.09 -2.52 16 18 C -0.09 -2.21 9.16 22.27 0.20 -2.01 16 19 C -0.09 -2.00 9.83 22.29 0.22 -1.78 16 20 C -0.03 -0.76 6.32 22.35 0.14 -0.62 16 21 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.02 16 22 C -0.04 -0.78 6.32 22.34 0.14 -0.64 16 23 Cl -0.04 -0.79 27.96 -2.72 -0.08 -0.86 16 24 C -0.08 -1.64 7.67 22.29 0.17 -1.46 16 25 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 27 H 0.09 1.88 3.51 -2.39 -0.01 1.87 16 28 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.00 -0.02 7.49 -2.39 -0.02 -0.04 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.39 9.31 7.41 -74.06 -0.55 8.76 16 32 H 0.14 3.26 7.19 -2.91 -0.02 3.24 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.18 2.45 6.98 -2.91 -0.02 2.42 16 Total: -1.00 -71.81 323.33 2.71 -69.10 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.61 Total: 9.80 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 3.84 Total: 1.87 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -2.15 Total: -81.36 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.47 Total: -43.97 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.15 Total: -1.88 kcal Total: -71.81 2.71 -69.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294680641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.004 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds