Wall clock time and date at job start Tue Mar 31 2020 11:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00226 * 2 1 4 4 C 1.50702 * 109.47051 * 269.99934 * 3 2 1 5 5 H 1.07995 * 120.00152 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00043 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00079 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47417 * 59.99674 * 8 6 4 10 10 H 1.48503 * 109.47120 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47207 * 300.00010 * 8 6 4 12 12 C 1.34780 * 120.00063 * 179.97438 * 2 1 3 13 13 O 1.21285 * 120.00108 * 180.02562 * 12 2 1 14 14 C 1.50695 * 119.99948 * 359.97438 * 12 2 1 15 15 H 1.09008 * 109.46925 * 55.00059 * 14 12 2 16 16 O 1.42897 * 109.47124 * 175.00126 * 14 12 2 17 17 C 1.50704 * 109.47371 * 295.00456 * 14 12 2 18 18 C 1.38256 * 119.98316 * 99.99666 * 17 14 12 19 19 C 1.38205 * 120.04002 * 180.02562 * 18 17 14 20 20 C 1.38351 * 119.99812 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 120.01861 * 179.97438 * 20 19 18 22 22 C 1.38440 * 119.96172 * 0.02562 * 20 19 18 23 23 Cl 1.73602 * 120.02280 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.97586 * 280.01915 * 17 14 12 25 25 H 1.09003 * 109.47193 * 270.00270 * 1 2 3 26 26 H 1.08997 * 109.46816 * 30.00021 * 1 2 3 27 27 H 1.08999 * 109.47163 * 150.00052 * 1 2 3 28 28 H 1.09000 * 109.46926 * 29.99525 * 3 2 1 29 29 H 1.08998 * 109.47825 * 149.99952 * 3 2 1 30 30 H 0.96998 * 120.00649 * 179.97438 * 7 6 4 31 31 H 0.96696 * 113.99854 * 60.00474 * 16 14 12 32 32 H 1.08002 * 119.98627 * 0.04999 * 18 17 14 33 33 H 1.08000 * 120.00631 * 179.72458 * 19 18 17 34 34 H 1.07997 * 120.00532 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6186 -0.6732 8 14 3.4368 3.4174 -3.4340 9 1 2.1391 3.5946 -4.1337 10 1 4.1784 4.7040 -3.4340 11 1 4.2395 2.3828 -4.1344 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0017 15 1 0.6930 -2.4927 -0.8399 16 8 2.3096 -3.5559 -0.1153 17 6 0.6146 -2.6062 1.2897 18 6 -0.7372 -2.3180 1.3191 19 6 -1.4451 -2.4399 2.4998 20 6 -0.8011 -2.8511 3.6532 21 17 -1.6897 -3.0038 5.1367 22 6 0.5525 -3.1398 3.6237 23 17 1.3621 -3.6565 5.0699 24 6 1.2597 -3.0167 2.4410 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1385 0.5138 30 1 4.0295 4.4444 -0.8504 31 1 2.9571 -3.5997 0.6015 32 1 -1.2405 -1.9977 0.4188 33 1 -2.5002 -2.2103 2.5231 34 1 2.3159 -3.2410 2.4176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294680643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:57 Heat of formation + Delta-G solvation = -87.249545 kcal Electronic energy + Delta-G solvation = -21963.957057 eV Core-core repulsion = 18334.030945 eV Total energy + Delta-G solvation = -3629.926113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70494 -40.04537 -37.97051 -37.60136 -37.36403 -36.47844 -34.79607 -32.64193 -32.11496 -29.95781 -28.32879 -27.09540 -24.83114 -24.02433 -23.05176 -20.62143 -19.08626 -18.72339 -18.48147 -17.74969 -17.22510 -16.93882 -16.48353 -16.17261 -15.93382 -15.18640 -15.02743 -14.79297 -14.73688 -14.18395 -13.90771 -13.84857 -13.48429 -13.17189 -13.11417 -12.94909 -12.93562 -12.65371 -12.53655 -12.49701 -12.21970 -12.13180 -11.98403 -11.74930 -11.71040 -10.64766 -10.62641 -10.05063 -9.66423 -9.47031 -8.22842 -6.37885 -0.24372 -0.00842 0.75366 1.12011 1.37920 1.42099 1.49072 1.64137 2.14884 2.31895 2.42432 3.07397 3.28620 3.32187 3.51706 3.61274 3.85786 4.02715 4.11396 4.33637 4.38607 4.62595 4.65047 4.78005 4.89987 4.94605 5.00058 5.17146 5.21521 5.46114 5.52507 5.78892 6.03983 6.34163 6.66068 6.73046 7.22822 7.37556 8.84150 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.003448 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.794640 B = 8119.367403 C = 8348.156518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.596 5.596 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.470 3.530 13 O -0.587 6.587 14 C 0.149 3.851 15 H 0.162 0.838 16 O -0.539 6.539 17 C -0.104 4.104 18 C -0.080 4.080 19 C -0.088 4.088 20 C -0.036 4.036 21 Cl -0.048 7.048 22 C -0.041 4.041 23 Cl -0.054 7.054 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.026 0.974 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.387 0.613 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 -14.818 7.757 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.328 5.328 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.258 3.742 13 O -0.469 6.469 14 C 0.087 3.913 15 H 0.179 0.821 16 O -0.345 6.345 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.106 4.106 20 C -0.063 4.063 21 Cl -0.019 7.019 22 C -0.068 4.068 23 Cl -0.025 7.025 24 C -0.116 4.116 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.200 0.800 33 H 0.196 0.804 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.980 -14.822 7.553 22.386 hybrid contribution 1.238 0.749 0.277 1.473 sum -13.742 -14.073 7.829 21.171 Atomic orbital electron populations 1.22486 0.77828 1.04622 1.02627 1.48149 1.08500 1.06126 1.69992 1.18779 0.91082 0.80303 0.96097 1.21682 1.37039 1.06582 0.93011 0.92498 1.25853 0.94867 0.96440 1.01901 1.70044 1.38840 1.14796 1.33141 0.85483 0.78945 0.77267 0.79224 1.18194 1.20560 1.20404 1.21964 0.88309 0.87135 0.76815 1.90674 1.16242 1.87621 1.52314 1.20756 0.90001 0.83100 0.97472 0.82070 1.86572 1.47097 1.47065 1.53795 1.20237 0.95661 1.00597 0.94046 1.21663 0.91841 0.96204 1.00066 1.21400 1.02310 0.97675 0.89259 1.21047 0.90650 1.04383 0.90265 1.98394 1.74455 1.96181 1.32841 1.20737 0.91943 1.04820 0.89336 1.98390 1.79189 1.88918 1.35998 1.20822 1.00758 0.99527 0.90462 0.90890 0.90874 0.88015 0.95643 0.98631 0.92413 0.76216 0.80029 0.80362 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 8.51 127.77 1.09 2.75 16 2 N -0.60 -23.49 2.86 -851.13 -2.43 -25.92 16 3 C 0.26 13.56 5.16 85.63 0.44 14.00 16 4 C -0.54 -30.61 9.39 25.60 0.24 -30.37 16 5 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.48 5.46 84.65 0.46 0.95 16 7 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 8 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 C 0.47 18.37 7.06 87.65 0.62 18.99 16 13 O -0.59 -29.50 15.90 15.94 0.25 -29.25 16 14 C 0.15 3.90 2.96 29.10 0.09 3.99 16 15 H 0.16 3.21 7.00 -2.38 -0.02 3.19 16 16 O -0.54 -15.14 12.84 -129.99 -1.67 -16.81 16 17 C -0.10 -2.20 4.52 -19.87 -0.09 -2.29 16 18 C -0.08 -1.15 6.94 22.27 0.15 -1.00 16 19 C -0.09 -1.22 9.83 22.29 0.22 -1.00 16 20 C -0.04 -0.67 6.32 22.34 0.14 -0.53 16 21 Cl -0.05 -0.86 27.96 -2.72 -0.08 -0.94 16 22 C -0.04 -0.90 6.32 22.35 0.14 -0.76 16 23 Cl -0.05 -1.20 27.96 -2.72 -0.08 -1.27 16 24 C -0.10 -2.22 9.10 22.29 0.20 -2.01 16 25 H 0.07 1.54 6.81 -2.39 -0.02 1.53 16 26 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 27 H 0.10 1.66 4.33 -2.39 -0.01 1.65 16 28 H 0.03 1.35 8.07 -2.39 -0.02 1.33 16 29 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.39 9.80 7.25 -74.06 -0.54 9.27 16 32 H 0.18 1.35 5.95 -2.91 -0.02 1.34 16 33 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.14 3.15 6.79 -2.91 -0.02 3.13 16 Total: -1.00 -75.49 319.09 2.65 -72.85 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.63 Total: 7.81 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.71 Total: 2.72 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.15 Total: -81.22 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.42 Total: -46.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.15 Total: -2.21 kcal Total: -75.49 2.65 -72.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294680643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.404 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds