Wall clock time and date at job start Tue Mar 31 2020 11:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48496 * 109.47436 * 240.00053 * 3 2 1 5 5 H 1.48498 * 109.47440 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47278 * 120.00056 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 H 1.09000 * 109.46844 * 304.72067 * 14 12 11 16 16 O 1.42891 * 109.46948 * 184.72242 * 14 12 11 17 17 C 1.50702 * 109.47102 * 64.71947 * 14 12 11 18 18 C 1.38262 * 119.97721 * 84.73061 * 17 14 12 19 19 C 1.38200 * 120.03780 * 179.72509 * 18 17 14 20 20 C 1.38353 * 119.99921 * 0.54440 * 19 18 17 21 21 Cl 1.73599 * 120.02060 * 179.74857 * 20 19 18 22 22 C 1.38445 * 119.95962 * 359.72610 * 20 19 18 23 23 Cl 1.73596 * 120.01899 * 180.02562 * 22 20 19 24 24 C 1.38204 * 119.98225 * 264.99912 * 17 14 12 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 28 28 H 1.08998 * 109.47382 * 59.99730 * 10 9 7 29 29 H 1.09002 * 109.47216 * 300.00167 * 10 9 7 30 30 H 0.97000 * 119.99484 * 359.97438 * 11 10 9 31 31 H 0.96700 * 114.00158 * 299.99850 * 16 14 12 32 32 H 1.08005 * 119.98438 * 359.97438 * 18 17 14 33 33 H 1.08004 * 120.00685 * 180.25114 * 19 18 17 34 34 H 1.08000 * 119.99809 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9309 -0.0012 12 6 2.1863 -6.0981 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4327 -7.4032 -0.0076 15 1 0.7401 -7.4271 0.8336 16 8 2.3568 -8.4873 0.1051 17 6 0.6624 -7.5316 -1.2965 18 6 1.2840 -8.0307 -2.4261 19 6 0.5772 -8.1544 -3.6072 20 6 -0.7501 -7.7680 -3.6627 21 17 -1.6367 -7.9170 -5.1478 22 6 -1.3710 -7.2630 -2.5330 23 17 -3.0366 -6.7784 -2.6007 24 6 -0.6635 -7.1452 -1.3501 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8898 28 1 2.8717 -3.6045 0.8894 29 1 2.8717 -3.6045 -0.8905 30 1 0.5425 -4.9308 -0.0011 31 1 3.0046 -8.5281 -0.6116 32 1 2.3215 -8.3280 -2.3844 33 1 1.0622 -8.5482 -4.4882 34 1 -1.1470 -6.7509 -0.4685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295779711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:12 Heat of formation + Delta-G solvation = -88.851850 kcal Electronic energy + Delta-G solvation = -21219.666977 eV Core-core repulsion = 17589.671383 eV Total energy + Delta-G solvation = -3629.995594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62329 -39.12420 -37.13688 -36.80406 -36.31311 -34.94138 -33.02393 -31.98927 -31.14923 -29.78756 -27.23348 -24.63638 -23.42572 -22.46484 -21.12463 -20.43502 -18.37511 -17.72911 -16.81162 -16.60076 -16.36332 -15.58668 -15.27530 -14.94328 -14.55733 -14.33922 -14.29883 -13.98000 -13.78223 -13.11020 -12.91505 -12.37570 -12.28445 -12.15256 -12.05231 -11.73591 -11.43710 -11.27937 -11.20179 -11.06964 -10.98116 -10.70365 -10.40609 -9.93050 -9.59287 -9.36848 -9.25331 -8.88300 -8.67308 -8.43242 -6.12899 -4.16301 0.49984 0.69219 1.53245 1.88760 2.65081 2.98496 3.28739 3.32817 3.34142 3.42877 4.09959 4.15287 4.21004 4.38427 4.60946 4.70679 4.80126 4.87988 5.09526 5.24219 5.31568 5.48081 5.60144 5.86602 6.12399 6.21075 6.24486 6.62527 6.73063 7.18045 7.44335 7.54634 7.78723 7.84689 8.20460 8.38912 8.89007 9.48847 10.98514 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.003619 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.797901 B = 7735.638196 C = 9230.092059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.712 5.712 12 C 0.481 3.519 13 O -0.537 6.537 14 C 0.134 3.866 15 H 0.137 0.863 16 O -0.528 6.528 17 C -0.099 4.099 18 C -0.089 4.089 19 C -0.093 4.093 20 C -0.028 4.028 21 Cl -0.048 7.048 22 C -0.024 4.024 23 Cl -0.042 7.042 24 C -0.086 4.086 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.397 0.603 31 H 0.383 0.617 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 -19.421 -6.497 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.363 5.363 12 C 0.265 3.735 13 O -0.415 6.415 14 C 0.071 3.929 15 H 0.154 0.846 16 O -0.333 6.333 17 C -0.100 4.100 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.056 4.056 21 Cl -0.019 7.019 22 C -0.052 4.052 23 Cl -0.012 7.012 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.232 0.768 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.040 -19.374 -6.103 20.710 hybrid contribution -0.057 1.215 -0.684 1.396 sum -4.097 -18.159 -6.787 19.814 Atomic orbital electron populations 1.69942 1.06083 1.27054 1.50051 1.24982 0.94887 0.99389 0.94878 0.86573 0.79538 0.82651 0.78793 1.20102 1.21199 1.20090 1.20986 0.93185 0.90346 1.51789 0.92312 1.19318 0.94148 0.91048 0.97907 1.21799 0.96143 0.81273 1.00966 1.46356 1.10616 1.06610 1.72701 1.21108 0.88740 0.86061 0.77581 1.90712 1.13466 1.87245 1.50083 1.20742 0.90434 0.86091 0.95672 0.84603 1.86629 1.46519 1.46998 1.53166 1.20332 0.94032 0.99466 0.96153 1.20952 1.00436 0.98029 0.91342 1.21001 0.91443 0.99507 0.99177 1.20834 0.93539 1.03479 0.87757 1.98399 1.75197 1.96273 1.32009 1.20714 0.87922 1.02451 0.94118 1.98414 1.14459 1.89797 1.98569 1.20879 0.93227 0.99351 0.97075 0.92734 0.95892 0.95894 0.92272 0.92405 0.76882 0.76772 0.84281 0.83631 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.45 5.51 -60.29 -0.33 -11.78 16 12 C 0.48 7.34 7.16 -10.98 -0.08 7.26 16 13 O -0.54 -10.15 16.32 -14.31 -0.23 -10.38 16 14 C 0.13 1.48 3.62 -29.03 -0.11 1.37 16 15 H 0.14 1.23 8.05 -51.93 -0.42 0.81 16 16 O -0.53 -5.96 12.79 -55.09 -0.70 -6.67 16 17 C -0.10 -0.99 4.95 -104.62 -0.52 -1.51 16 18 C -0.09 -0.81 9.32 -39.59 -0.37 -1.18 16 19 C -0.09 -0.83 9.83 -39.55 -0.39 -1.22 16 20 C -0.03 -0.29 6.32 -39.46 -0.25 -0.54 16 21 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16 22 C -0.02 -0.26 6.32 -39.47 -0.25 -0.51 16 23 Cl -0.04 -0.45 27.96 -51.86 -1.45 -1.90 16 24 C -0.09 -0.86 9.29 -39.55 -0.37 -1.22 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.40 5.52 8.29 -40.82 -0.34 5.18 16 31 H 0.38 3.43 7.14 45.56 0.33 3.76 16 32 H 0.14 0.99 6.62 -52.48 -0.35 0.64 16 33 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -31.88 331.61 -9.22 -41.09 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.86 Total: 3.40 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.90 Total: -7.96 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.40 Total: -36.74 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.94 Total: -17.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.90 Total: -3.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.88 -9.22 -41.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295779711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.758 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds