Wall clock time and date at job start Tue Mar 31 2020 11:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48491 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47155 * 300.00302 * 3 2 1 6 6 H 1.48510 * 109.46912 * 59.99977 * 3 2 1 7 7 C 1.37873 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99789 * 180.02562 * 11 10 9 13 13 O 1.21273 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99624 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.47372 * 54.99614 * 14 12 11 16 16 O 1.42905 * 109.46939 * 175.00056 * 14 12 11 17 17 C 1.50707 * 109.47223 * 294.99599 * 14 12 11 18 18 C 1.38261 * 119.97822 * 280.00429 * 17 14 12 19 19 C 1.38212 * 120.03379 * 179.97438 * 18 17 14 20 20 C 1.38345 * 119.99944 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.01477 * 180.02562 * 20 19 18 22 22 C 1.38440 * 119.96339 * 0.02562 * 20 19 18 23 23 Cl 1.73601 * 120.02000 * 180.02562 * 22 20 19 24 24 C 1.38197 * 119.97954 * 100.00326 * 17 14 12 25 25 H 0.97004 * 119.99960 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46489 * 60.00313 * 9 7 2 27 27 H 1.08998 * 109.47376 * 300.00598 * 9 7 2 28 28 H 1.09003 * 109.46737 * 60.01053 * 10 9 7 29 29 H 1.08998 * 109.47498 * 300.00597 * 10 9 7 30 30 H 0.96996 * 119.99772 * 359.97438 * 11 10 9 31 31 H 0.96699 * 114.00150 * 59.99322 * 16 14 12 32 32 H 1.08002 * 119.98376 * 0.02562 * 18 17 14 33 33 H 1.08000 * 119.99446 * 180.27536 * 19 18 17 34 34 H 1.08002 * 120.00296 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1868 -6.0980 -0.0031 13 8 3.3995 -6.0979 -0.0036 14 6 1.4333 -7.4030 -0.0043 15 1 0.7414 -7.4223 -0.8463 16 8 2.3575 -8.4866 -0.1222 17 6 0.6617 -7.5388 1.2831 18 6 1.3062 -7.9515 2.4346 19 6 0.5998 -8.0759 3.6160 20 6 -0.7530 -7.7880 3.6467 21 17 -1.6405 -7.9436 5.1306 22 6 -1.3985 -7.3759 2.4935 23 17 -3.0959 -7.0136 2.5304 24 6 -0.6896 -7.2508 1.3120 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8714 -3.6038 -0.8922 30 1 0.5429 -4.9308 -0.0016 31 1 3.0047 -8.5313 0.5949 32 1 2.3624 -8.1759 2.4111 33 1 1.1049 -8.3940 4.5161 34 1 -1.1924 -6.9281 0.4123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295779714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:15 Heat of formation + Delta-G solvation = -89.112651 kcal Electronic energy + Delta-G solvation = -21201.855432 eV Core-core repulsion = 17571.848529 eV Total energy + Delta-G solvation = -3630.006903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61768 -39.12911 -37.13327 -36.81129 -36.31173 -34.94040 -33.02091 -31.98703 -31.16612 -29.79141 -27.22444 -24.63753 -23.43672 -22.47538 -21.12652 -20.42509 -18.35181 -17.73620 -16.81242 -16.60454 -16.36928 -15.57953 -15.28378 -14.93136 -14.55022 -14.33638 -14.31198 -13.97106 -13.77784 -13.11903 -12.93434 -12.38906 -12.29541 -12.15979 -12.04142 -11.74328 -11.43678 -11.26852 -11.20944 -11.09911 -10.98542 -10.67322 -10.42468 -9.91730 -9.59403 -9.35449 -9.24688 -8.89362 -8.67571 -8.44052 -6.13484 -4.16726 0.49585 0.69006 1.52549 1.88076 2.65395 2.98138 3.25706 3.32960 3.36300 3.42911 4.11619 4.16058 4.20424 4.38161 4.60937 4.70237 4.79955 4.88573 5.09329 5.23860 5.31559 5.47837 5.60173 5.86609 6.12295 6.21056 6.24389 6.62496 6.73125 7.18491 7.44512 7.54371 7.78947 7.84576 8.20193 8.39064 8.89171 9.48642 10.98022 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.003570 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.656781 B = 7841.438558 C = 9277.823989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.712 5.712 12 C 0.481 3.519 13 O -0.537 6.537 14 C 0.134 3.866 15 H 0.136 0.864 16 O -0.528 6.528 17 C -0.099 4.099 18 C -0.089 4.089 19 C -0.092 4.092 20 C -0.028 4.028 21 Cl -0.048 7.048 22 C -0.025 4.025 23 Cl -0.042 7.042 24 C -0.085 4.085 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.398 0.602 31 H 0.383 0.617 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -19.475 6.469 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.363 5.363 12 C 0.265 3.735 13 O -0.415 6.415 14 C 0.071 3.929 15 H 0.153 0.847 16 O -0.333 6.333 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.055 4.055 21 Cl -0.019 7.019 22 C -0.053 4.053 23 Cl -0.013 7.013 24 C -0.104 4.104 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.231 0.769 31 H 0.232 0.768 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.004 -19.441 6.069 20.756 hybrid contribution -0.089 1.211 0.690 1.396 sum -4.093 -18.230 6.759 19.869 Atomic orbital electron populations 1.69961 1.06087 1.26836 1.50259 1.24987 0.94881 0.99416 0.94902 0.86467 0.80168 0.83341 0.77666 1.19574 1.20887 1.20910 1.21062 0.93261 0.90317 1.51495 0.92199 1.19332 0.94165 0.91091 0.97920 1.21798 0.96134 0.81274 1.00964 1.46356 1.10632 1.06602 1.72680 1.21109 0.88735 0.86074 0.77582 1.90710 1.13474 1.87253 1.50093 1.20748 0.90435 0.86094 0.95654 0.84659 1.86632 1.46548 1.47179 1.52929 1.20328 0.93816 0.99838 0.96042 1.20972 1.00571 0.97930 0.91255 1.21005 0.91230 0.99572 0.99321 1.20833 0.93137 1.04051 0.87528 1.98399 1.75227 1.96094 1.32151 1.20716 0.87172 1.03471 0.93917 1.98412 1.11367 1.92835 1.98701 1.20893 0.93061 0.99289 0.97187 0.92845 0.95875 0.95894 0.92405 0.92276 0.76852 0.76783 0.84285 0.83622 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.44 5.51 -60.29 -0.33 -11.77 16 12 C 0.48 7.31 7.14 -10.99 -0.08 7.24 16 13 O -0.54 -10.12 16.32 -14.30 -0.23 -10.35 16 14 C 0.13 1.47 3.62 -29.03 -0.11 1.37 16 15 H 0.14 1.22 8.00 -51.93 -0.42 0.81 16 16 O -0.53 -5.98 12.84 -55.09 -0.71 -6.69 16 17 C -0.10 -0.99 4.92 -104.62 -0.51 -1.50 16 18 C -0.09 -0.82 9.31 -39.58 -0.37 -1.19 16 19 C -0.09 -0.83 9.83 -39.55 -0.39 -1.22 16 20 C -0.03 -0.29 6.32 -39.47 -0.25 -0.54 16 21 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16 22 C -0.03 -0.27 6.32 -39.47 -0.25 -0.52 16 23 Cl -0.04 -0.45 27.96 -51.86 -1.45 -1.90 16 24 C -0.09 -0.83 9.45 -39.56 -0.37 -1.21 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 5.53 8.47 -40.82 -0.35 5.18 16 31 H 0.38 3.45 7.25 45.56 0.33 3.78 16 32 H 0.14 1.02 6.78 -52.49 -0.36 0.66 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.17 8.04 -52.49 -0.42 0.74 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -31.89 332.17 -9.22 -41.11 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -2.86 Total: 3.37 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.90 Total: -7.95 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.40 Total: -36.73 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.94 Total: -17.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.90 Total: -3.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.89 -9.22 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295779714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.003 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds