Wall clock time and date at job start Tue Mar 31 2020 11:05:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86803 * 119.99935 * 2 1
4 4 H 1.48491 * 109.47361 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47155 * 300.00302 * 3 2 1
6 6 H 1.48510 * 109.46912 * 59.99977 * 3 2 1
7 7 C 1.37873 * 120.00166 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99893 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00109 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2
11 11 N 1.46508 * 109.46978 * 180.02562 * 10 9 7
12 12 C 1.34778 * 119.99789 * 180.02562 * 11 10 9
13 13 O 1.21273 * 119.99962 * 359.97438 * 12 11 10
14 14 C 1.50699 * 119.99624 * 180.02562 * 12 11 10
15 15 H 1.08995 * 109.47372 * 54.99614 * 14 12 11
16 16 O 1.42905 * 109.46939 * 175.00056 * 14 12 11
17 17 C 1.50707 * 109.47223 * 294.99599 * 14 12 11
18 18 C 1.38261 * 119.97822 * 280.00429 * 17 14 12
19 19 C 1.38212 * 120.03379 * 179.97438 * 18 17 14
20 20 C 1.38345 * 119.99944 * 0.02562 * 19 18 17
21 21 Cl 1.73601 * 120.01477 * 180.02562 * 20 19 18
22 22 C 1.38440 * 119.96339 * 0.02562 * 20 19 18
23 23 Cl 1.73601 * 120.02000 * 180.02562 * 22 20 19
24 24 C 1.38197 * 119.97954 * 100.00326 * 17 14 12
25 25 H 0.97004 * 119.99960 * 359.97438 * 1 2 3
26 26 H 1.09008 * 109.46489 * 60.00313 * 9 7 2
27 27 H 1.08998 * 109.47376 * 300.00598 * 9 7 2
28 28 H 1.09003 * 109.46737 * 60.01053 * 10 9 7
29 29 H 1.08998 * 109.47498 * 300.00597 * 10 9 7
30 30 H 0.96996 * 119.99772 * 359.97438 * 11 10 9
31 31 H 0.96699 * 114.00150 * 59.99322 * 16 14 12
32 32 H 1.08002 * 119.98376 * 0.02562 * 18 17 14
33 33 H 1.08000 * 119.99446 * 180.27536 * 19 18 17
34 34 H 1.08002 * 120.00296 * 359.97438 * 24 17 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8903 2.3965 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1939 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6620 -0.0018
11 7 1.5129 -4.9308 -0.0024
12 6 2.1868 -6.0980 -0.0031
13 8 3.3995 -6.0979 -0.0036
14 6 1.4333 -7.4030 -0.0043
15 1 0.7414 -7.4223 -0.8463
16 8 2.3575 -8.4866 -0.1222
17 6 0.6617 -7.5388 1.2831
18 6 1.3062 -7.9515 2.4346
19 6 0.5998 -8.0759 3.6160
20 6 -0.7530 -7.7880 3.6467
21 17 -1.6405 -7.9436 5.1306
22 6 -1.3985 -7.3759 2.4935
23 17 -3.0959 -7.0136 2.5304
24 6 -0.6896 -7.2508 1.3120
25 1 -0.4850 0.8401 0.0004
26 1 0.6242 -2.5566 -0.8904
27 1 0.6247 -2.5571 0.8896
28 1 2.8726 -3.6047 0.8878
29 1 2.8714 -3.6038 -0.8922
30 1 0.5429 -4.9308 -0.0016
31 1 3.0047 -8.5313 0.5949
32 1 2.3624 -8.1759 2.4111
33 1 1.1049 -8.3940 4.5161
34 1 -1.1924 -6.9281 0.4123
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000295779714.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:15
Heat of formation + Delta-G solvation = -89.112651 kcal
Electronic energy + Delta-G solvation = -21201.855432 eV
Core-core repulsion = 17571.848529 eV
Total energy + Delta-G solvation = -3630.006903 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 317.037 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.61768 -39.12911 -37.13327 -36.81129 -36.31173 -34.94040 -33.02091 -31.98703
-31.16612 -29.79141 -27.22444 -24.63753 -23.43672 -22.47538 -21.12652 -20.42509
-18.35181 -17.73620 -16.81242 -16.60454 -16.36928 -15.57953 -15.28378 -14.93136
-14.55022 -14.33638 -14.31198 -13.97106 -13.77784 -13.11903 -12.93434 -12.38906
-12.29541 -12.15979 -12.04142 -11.74328 -11.43678 -11.26852 -11.20944 -11.09911
-10.98542 -10.67322 -10.42468 -9.91730 -9.59403 -9.35449 -9.24688 -8.89362
-8.67571 -8.44052 -6.13484 -4.16726 0.49585 0.69006 1.52549 1.88076
2.65395 2.98138 3.25706 3.32960 3.36300 3.42911 4.11619 4.16058
4.20424 4.38161 4.60937 4.70237 4.79955 4.88573 5.09329 5.23860
5.31559 5.47837 5.60173 5.86609 6.12295 6.21056 6.24389 6.62496
6.73125 7.18491 7.44512 7.54371 7.78947 7.84576 8.20193 8.39064
8.89171 9.48642 10.98022
Molecular weight = 317.04amu
Principal moments of inertia in cm(-1)
A = 0.011924 B = 0.003570 C = 0.003017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2347.656781 B = 7841.438558 C = 9277.823989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.060 3.940
3 Si 0.896 3.104
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.523 4.523
8 H 0.060 0.940
9 C 0.012 3.988
10 C 0.120 3.880
11 N -0.712 5.712
12 C 0.481 3.519
13 O -0.537 6.537
14 C 0.134 3.866
15 H 0.136 0.864
16 O -0.528 6.528
17 C -0.099 4.099
18 C -0.089 4.089
19 C -0.092 4.092
20 C -0.028 4.028
21 Cl -0.048 7.048
22 C -0.025 4.025
23 Cl -0.042 7.042
24 C -0.085 4.085
25 H 0.262 0.738
26 H 0.023 0.977
27 H 0.023 0.977
28 H 0.058 0.942
29 H 0.059 0.941
30 H 0.398 0.602
31 H 0.383 0.617
32 H 0.139 0.861
33 H 0.146 0.854
34 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.169 -19.475 6.469 20.940
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.142 4.142
3 Si 0.724 3.276
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.561 4.561
8 H 0.078 0.922
9 C -0.025 4.025
10 C -0.002 4.002
11 N -0.363 5.363
12 C 0.265 3.735
13 O -0.415 6.415
14 C 0.071 3.929
15 H 0.153 0.847
16 O -0.333 6.333
17 C -0.100 4.100
18 C -0.107 4.107
19 C -0.111 4.111
20 C -0.055 4.055
21 Cl -0.019 7.019
22 C -0.053 4.053
23 Cl -0.013 7.013
24 C -0.104 4.104
25 H 0.072 0.928
26 H 0.041 0.959
27 H 0.041 0.959
28 H 0.076 0.924
29 H 0.077 0.923
30 H 0.231 0.769
31 H 0.232 0.768
32 H 0.157 0.843
33 H 0.164 0.836
34 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -4.004 -19.441 6.069 20.756
hybrid contribution -0.089 1.211 0.690 1.396
sum -4.093 -18.230 6.759 19.869
Atomic orbital electron populations
1.69961 1.06087 1.26836 1.50259 1.24987 0.94881 0.99416 0.94902
0.86467 0.80168 0.83341 0.77666 1.19574 1.20887 1.20910 1.21062
0.93261 0.90317 1.51495 0.92199 1.19332 0.94165 0.91091 0.97920
1.21798 0.96134 0.81274 1.00964 1.46356 1.10632 1.06602 1.72680
1.21109 0.88735 0.86074 0.77582 1.90710 1.13474 1.87253 1.50093
1.20748 0.90435 0.86094 0.95654 0.84659 1.86632 1.46548 1.47179
1.52929 1.20328 0.93816 0.99838 0.96042 1.20972 1.00571 0.97930
0.91255 1.21005 0.91230 0.99572 0.99321 1.20833 0.93137 1.04051
0.87528 1.98399 1.75227 1.96094 1.32151 1.20716 0.87172 1.03471
0.93917 1.98412 1.11367 1.92835 1.98701 1.20893 0.93061 0.99289
0.97187 0.92845 0.95875 0.95894 0.92405 0.92276 0.76852 0.76783
0.84285 0.83622 0.83317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16
4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16
8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16
9 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16
10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16
11 N -0.71 -11.44 5.51 -60.29 -0.33 -11.77 16
12 C 0.48 7.31 7.14 -10.99 -0.08 7.24 16
13 O -0.54 -10.12 16.32 -14.30 -0.23 -10.35 16
14 C 0.13 1.47 3.62 -29.03 -0.11 1.37 16
15 H 0.14 1.22 8.00 -51.93 -0.42 0.81 16
16 O -0.53 -5.98 12.84 -55.09 -0.71 -6.69 16
17 C -0.10 -0.99 4.92 -104.62 -0.51 -1.50 16
18 C -0.09 -0.82 9.31 -39.58 -0.37 -1.19 16
19 C -0.09 -0.83 9.83 -39.55 -0.39 -1.22 16
20 C -0.03 -0.29 6.32 -39.47 -0.25 -0.54 16
21 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16
22 C -0.03 -0.27 6.32 -39.47 -0.25 -0.52 16
23 Cl -0.04 -0.45 27.96 -51.86 -1.45 -1.90 16
24 C -0.09 -0.83 9.45 -39.56 -0.37 -1.21 16
25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
26 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16
27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
30 H 0.40 5.53 8.47 -40.82 -0.35 5.18 16
31 H 0.38 3.45 7.25 45.56 0.33 3.78 16
32 H 0.14 1.02 6.78 -52.49 -0.36 0.66 16
33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16
34 H 0.15 1.17 8.04 -52.49 -0.42 0.74 16
LS Contribution 332.17 15.07 5.01 5.01
Total: -1.00 -31.89 332.17 -9.22 -41.11
By element:
Atomic # 1 Polarization: 6.24 SS G_CDS: -2.86 Total: 3.37 kcal
Atomic # 6 Polarization: -5.05 SS G_CDS: -2.90 Total: -7.95 kcal
Atomic # 7 Polarization: -37.14 SS G_CDS: 0.40 Total: -36.73 kcal
Atomic # 8 Polarization: -16.10 SS G_CDS: -0.94 Total: -17.04 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 17 Polarization: -0.93 SS G_CDS: -2.90 Total: -3.83 kcal
Total LS contribution 5.01 Total: 5.01 kcal
Total: -31.89 -9.22 -41.11 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000295779714.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.003 kcal
(2) G-P(sol) polarization free energy of solvation -31.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.113 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds