Wall clock time and date at job start Tue Mar 31 2020 11:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48491 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47155 * 300.00302 * 3 2 1 6 6 H 1.48510 * 109.46912 * 59.99977 * 3 2 1 7 7 C 1.37873 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46978 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99789 * 180.02562 * 11 10 9 13 13 O 1.21273 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99624 * 180.02562 * 12 11 10 15 15 H 1.08995 * 109.47372 * 54.99614 * 14 12 11 16 16 O 1.42905 * 109.46939 * 175.00056 * 14 12 11 17 17 C 1.50707 * 109.47223 * 294.99599 * 14 12 11 18 18 C 1.38261 * 119.97822 * 280.00429 * 17 14 12 19 19 C 1.38212 * 120.03379 * 179.97438 * 18 17 14 20 20 C 1.38345 * 119.99944 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.01477 * 180.02562 * 20 19 18 22 22 C 1.38440 * 119.96339 * 0.02562 * 20 19 18 23 23 Cl 1.73601 * 120.02000 * 180.02562 * 22 20 19 24 24 C 1.38197 * 119.97954 * 100.00326 * 17 14 12 25 25 H 0.97004 * 119.99960 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46489 * 60.00313 * 9 7 2 27 27 H 1.08998 * 109.47376 * 300.00598 * 9 7 2 28 28 H 1.09003 * 109.46737 * 60.01053 * 10 9 7 29 29 H 1.08998 * 109.47498 * 300.00597 * 10 9 7 30 30 H 0.96996 * 119.99772 * 359.97438 * 11 10 9 31 31 H 0.96699 * 114.00150 * 59.99322 * 16 14 12 32 32 H 1.08002 * 119.98376 * 0.02562 * 18 17 14 33 33 H 1.08000 * 119.99446 * 180.27536 * 19 18 17 34 34 H 1.08002 * 120.00296 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0024 12 6 2.1868 -6.0980 -0.0031 13 8 3.3995 -6.0979 -0.0036 14 6 1.4333 -7.4030 -0.0043 15 1 0.7414 -7.4223 -0.8463 16 8 2.3575 -8.4866 -0.1222 17 6 0.6617 -7.5388 1.2831 18 6 1.3062 -7.9515 2.4346 19 6 0.5998 -8.0759 3.6160 20 6 -0.7530 -7.7880 3.6467 21 17 -1.6405 -7.9436 5.1306 22 6 -1.3985 -7.3759 2.4935 23 17 -3.0959 -7.0136 2.5304 24 6 -0.6896 -7.2508 1.3120 25 1 -0.4850 0.8401 0.0004 26 1 0.6242 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6047 0.8878 29 1 2.8714 -3.6038 -0.8922 30 1 0.5429 -4.9308 -0.0016 31 1 3.0047 -8.5313 0.5949 32 1 2.3624 -8.1759 2.4111 33 1 1.1049 -8.3940 4.5161 34 1 -1.1924 -6.9281 0.4123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295779714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:14 Heat of formation + Delta-G solvation = -109.645036 kcal Electronic energy + Delta-G solvation = -21202.745783 eV Core-core repulsion = 17571.848529 eV Total energy + Delta-G solvation = -3630.897254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59260 -40.15393 -38.04669 -37.59891 -37.22967 -36.46867 -34.87927 -32.95402 -31.94271 -31.42845 -28.36795 -26.39237 -24.16828 -23.51225 -22.79378 -21.62279 -19.23448 -18.89338 -18.43578 -17.60936 -17.43832 -16.70109 -16.51412 -16.34238 -16.11439 -15.31100 -15.20665 -15.02195 -14.84676 -14.55269 -14.29165 -13.77506 -13.24272 -13.18952 -12.96237 -12.95181 -12.85243 -12.65331 -12.52601 -12.26545 -12.23979 -11.98009 -11.85644 -11.66475 -11.42676 -10.77880 -10.61145 -10.09572 -10.05582 -9.74626 -8.24141 -6.34359 -0.28355 -0.03729 0.74464 1.10456 1.40672 1.42339 1.46954 1.54651 2.05896 2.30024 2.43842 3.11152 3.27186 3.32833 3.50649 3.70777 3.90507 3.97214 4.07969 4.33978 4.47791 4.48700 4.63810 4.73442 4.84984 4.88901 5.12242 5.22727 5.41317 5.46990 5.58050 5.78221 6.15786 6.35571 6.58088 6.79216 7.12819 7.35317 8.87648 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011924 B = 0.003570 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.656781 B = 7841.438558 C = 9277.823989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.709 5.709 12 C 0.483 3.517 13 O -0.574 6.574 14 C 0.151 3.849 15 H 0.160 0.840 16 O -0.534 6.534 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.092 4.092 20 C -0.037 4.037 21 Cl -0.050 7.050 22 C -0.040 4.040 23 Cl -0.049 7.049 24 C -0.086 4.086 25 H 0.265 0.735 26 H 0.010 0.990 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.410 0.590 31 H 0.392 0.608 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -20.028 6.562 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.360 5.360 12 C 0.269 3.731 13 O -0.454 6.454 14 C 0.088 3.912 15 H 0.177 0.823 16 O -0.340 6.340 17 C -0.107 4.107 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.065 4.065 21 Cl -0.021 7.021 22 C -0.068 4.068 23 Cl -0.020 7.020 24 C -0.105 4.105 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.245 0.755 31 H 0.243 0.757 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.558 -20.023 6.167 21.251 hybrid contribution -0.225 1.328 0.689 1.513 sum -3.783 -18.694 6.856 20.268 Atomic orbital electron populations 1.70059 1.07497 1.27885 1.51057 1.25825 0.95730 1.02961 0.94444 0.85444 0.79058 0.79003 0.77844 1.18916 1.20270 1.20375 1.21490 0.93576 0.91938 1.51414 0.92312 1.19134 0.94229 0.91766 0.96388 1.21255 0.95030 0.82107 1.00000 1.46150 1.11140 1.05672 1.73042 1.21877 0.88439 0.86914 0.75844 1.90693 1.15331 1.87902 1.51508 1.20662 0.90061 0.83270 0.97205 0.82267 1.86626 1.46959 1.46722 1.53727 1.20253 0.93836 1.00787 0.95806 1.21269 1.01546 0.97049 0.90972 1.21261 0.90732 0.98933 1.00146 1.21047 0.93766 1.04230 0.87460 1.98397 1.75368 1.96099 1.32194 1.20854 0.87052 1.04392 0.94488 1.98407 1.11914 1.92953 1.98730 1.21087 0.93081 0.98678 0.97609 0.92589 0.97170 0.97419 0.93389 0.93255 0.75457 0.75665 0.82469 0.81533 0.81640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 2 C 0.01 0.51 5.46 84.65 0.46 0.98 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -29.81 9.11 25.60 0.23 -29.58 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.08 5.09 29.85 0.15 1.24 16 10 C 0.14 5.67 5.61 86.38 0.48 6.16 16 11 N -0.71 -22.14 5.51 -463.05 -2.55 -24.69 16 12 C 0.48 14.01 7.14 87.66 0.63 14.63 16 13 O -0.57 -21.10 16.32 15.98 0.26 -20.84 16 14 C 0.15 2.97 3.62 29.10 0.11 3.08 16 15 H 0.16 2.39 8.00 -2.39 -0.02 2.37 16 16 O -0.53 -10.83 12.84 -129.99 -1.67 -12.50 16 17 C -0.11 -1.88 4.92 -19.87 -0.10 -1.98 16 18 C -0.09 -1.45 9.31 22.27 0.21 -1.25 16 19 C -0.09 -1.48 9.83 22.29 0.22 -1.26 16 20 C -0.04 -0.72 6.32 22.34 0.14 -0.58 16 21 Cl -0.05 -0.95 27.96 -2.72 -0.08 -1.02 16 22 C -0.04 -0.81 6.32 22.34 0.14 -0.67 16 23 Cl -0.05 -1.02 27.96 -2.72 -0.08 -1.10 16 24 C -0.09 -1.52 9.45 22.29 0.21 -1.31 16 25 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.41 10.92 8.47 -92.71 -0.79 10.14 16 31 H 0.39 6.19 7.25 -74.06 -0.54 5.65 16 32 H 0.16 1.89 6.78 -2.91 -0.02 1.87 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.17 2.25 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -67.50 332.17 0.93 -66.58 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.16 Total: 12.25 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 2.89 Total: -10.54 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.27 Total: -77.86 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.41 Total: -33.33 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.15 Total: -2.12 kcal Total: -67.50 0.93 -66.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295779714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.070 kcal (2) G-P(sol) polarization free energy of solvation -67.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds