Wall clock time and date at job start Tue Mar 31 2020 11:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00376 * 2 1 4 4 H 1.48503 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47396 * 300.00720 * 3 2 1 6 6 H 1.48505 * 109.46973 * 60.00069 * 3 2 1 7 7 C 1.37879 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99647 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46674 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00235 * 89.99630 * 10 9 7 12 12 C 1.50697 * 109.47368 * 270.00119 * 11 10 9 13 13 C 1.34515 * 125.79159 * 89.99416 * 12 11 10 14 14 C 1.41385 * 106.84000 * 180.02562 * 13 12 11 15 15 C 1.34507 * 106.84104 * 0.02562 * 14 13 12 16 16 O 1.34300 * 108.42410 * 359.97438 * 15 14 13 17 17 C 1.34776 * 119.99605 * 269.99410 * 10 9 7 18 18 O 1.21273 * 120.00320 * 0.02562 * 17 10 9 19 19 C 1.50707 * 119.99677 * 179.97438 * 17 10 9 20 20 H 1.08998 * 115.54661 * 34.41855 * 19 17 10 21 21 C 1.52998 * 117.49831 * 180.08538 * 19 17 10 22 22 C 1.52995 * 117.49860 * 248.75029 * 19 17 10 23 23 Cl 1.80298 * 117.50137 * 359.97438 * 22 19 17 24 24 Cl 1.80303 * 117.49599 * 145.02462 * 22 19 17 25 25 H 0.97009 * 119.99198 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47566 * 59.99787 * 9 7 2 27 27 H 1.08998 * 109.46901 * 299.99499 * 9 7 2 28 28 H 1.09002 * 109.47223 * 149.99521 * 11 10 9 29 29 H 1.09010 * 109.46962 * 29.99719 * 11 10 9 30 30 H 1.08001 * 126.57671 * 0.29417 * 13 12 11 31 31 H 1.08003 * 126.57418 * 180.02562 * 14 13 12 32 32 H 1.08001 * 125.78820 * 179.97438 * 15 14 13 33 33 H 1.08993 * 117.50059 * 214.97803 * 21 19 17 34 34 H 1.08997 * 117.49500 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0017 10 7 2.2028 -3.6127 -0.0015 11 6 2.6779 -4.1701 1.2673 12 6 3.9208 -3.4379 1.7036 13 6 3.9551 -2.3377 2.4767 14 6 5.3165 -1.9899 2.6339 15 6 6.0325 -2.8980 1.9470 16 8 5.1820 -3.7728 1.3857 17 6 2.6415 -4.1244 -1.1686 18 8 2.2486 -3.6628 -2.2189 19 6 3.6212 -5.2696 -1.1684 20 1 3.5040 -5.9883 -0.3574 21 6 4.0827 -5.8047 -2.5254 22 6 5.0418 -4.9840 -1.6594 23 17 5.4155 -3.3034 -2.1948 24 17 6.3939 -5.8628 -0.8528 25 1 -0.4849 0.8402 0.0004 26 1 0.6245 -2.5563 -0.8919 27 1 0.6239 -2.5574 0.8880 28 1 2.9063 -5.2279 1.1367 29 1 1.9040 -4.0565 2.0266 30 1 3.1060 -1.8218 2.9001 31 1 5.7066 -1.1551 3.1974 32 1 7.1089 -2.9200 1.8613 33 1 4.2696 -6.8754 -2.6070 34 1 3.6774 -5.3288 -3.4183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299267272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:23 Heat of formation + Delta-G solvation = -11.190581 kcal Electronic energy + Delta-G solvation = -23005.591720 eV Core-core repulsion = 19378.963772 eV Total energy + Delta-G solvation = -3626.627949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.24632 -41.03615 -38.31938 -37.03104 -36.91006 -36.04517 -34.74341 -33.66460 -31.43017 -29.64072 -26.79278 -26.13117 -23.62498 -23.26278 -22.45235 -21.53091 -19.98879 -18.81103 -18.70845 -18.07664 -17.23823 -16.80450 -16.61435 -16.33694 -15.79823 -15.43735 -15.00369 -14.39798 -14.14851 -14.07957 -13.84441 -13.55442 -13.45601 -13.28946 -13.15847 -12.99450 -12.91130 -12.69909 -12.49032 -12.25005 -12.17609 -11.87793 -11.69585 -11.59454 -10.97657 -10.66486 -10.62802 -10.57908 -9.66910 -9.18795 -8.19479 -6.26946 0.12512 0.90784 1.11801 1.30629 1.33927 1.41631 1.45608 1.84105 2.23341 2.30141 2.44189 2.51781 3.12260 3.13342 3.32576 3.57184 3.88928 4.03088 4.22047 4.32331 4.49928 4.56799 4.58933 4.79008 5.02462 5.07766 5.20471 5.27216 5.37472 5.56879 5.75570 5.82591 6.11829 6.39198 6.61378 6.81028 7.26671 7.43711 8.88503 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.006416 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.871203 B = 4363.314738 C = 4971.370423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.015 3.985 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.047 0.953 9 C 0.262 3.738 10 N -0.589 5.589 11 C 0.189 3.811 12 C -0.039 4.039 13 C -0.193 4.193 14 C -0.236 4.236 15 C -0.037 4.037 16 O -0.165 6.165 17 C 0.533 3.467 18 O -0.566 6.566 19 C -0.162 4.162 20 H 0.174 0.826 21 C -0.097 4.097 22 C 0.025 3.975 23 Cl -0.108 7.108 24 Cl -0.072 7.072 25 H 0.264 0.736 26 H 0.006 0.994 27 H 0.032 0.968 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.227 0.773 33 H 0.169 0.831 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.227 -14.852 3.250 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.142 3.858 10 N -0.318 5.318 11 C 0.066 3.934 12 C -0.091 4.091 13 C -0.214 4.214 14 C -0.256 4.256 15 C -0.105 4.105 16 O -0.060 6.060 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.184 4.184 20 H 0.191 0.809 21 C -0.135 4.135 22 C -0.027 4.027 23 Cl -0.081 7.081 24 Cl -0.045 7.045 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.050 0.950 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.243 0.757 33 H 0.187 0.813 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.050 -14.667 2.558 19.153 hybrid contribution 0.269 2.002 0.239 2.034 sum 12.319 -12.664 2.797 17.888 Atomic orbital electron populations 1.70022 1.06987 1.27525 1.52240 1.25548 0.95482 1.01906 0.95401 0.85711 0.78840 0.80594 0.77810 1.20109 1.21148 1.19591 1.21535 0.92821 0.91395 1.48954 0.93452 1.18867 0.87396 0.83160 0.96425 1.48153 1.44100 1.34316 1.05279 1.20191 0.89671 0.97158 0.86370 1.22868 0.84815 0.99990 1.01388 1.21662 0.97879 0.97934 1.03899 1.22021 0.93328 1.03365 1.06842 1.24443 0.96723 0.91162 0.98153 1.84007 1.15228 1.47414 1.59383 1.19766 0.81314 0.83303 0.83521 1.90675 1.59011 1.62455 1.32364 1.23323 0.91259 1.00160 1.03635 0.80889 1.24138 0.92978 1.02497 0.93860 1.26426 0.85819 0.85562 1.04894 1.98793 1.95322 1.23558 1.90413 1.98735 1.50014 1.74613 1.81117 0.92722 0.97587 0.94981 0.86059 0.86169 0.85009 0.82915 0.75713 0.81322 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 2 C 0.02 0.86 5.46 84.65 0.46 1.32 16 3 Si 0.94 45.97 29.54 68.60 2.03 48.00 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.51 -28.29 9.14 25.60 0.23 -28.05 16 8 H 0.05 2.74 7.65 -2.91 -0.02 2.72 16 9 C 0.26 13.27 5.20 85.63 0.45 13.72 16 10 N -0.59 -23.27 2.44 -830.48 -2.03 -25.29 16 11 C 0.19 5.56 5.81 85.63 0.50 6.05 16 12 C -0.04 -1.27 6.90 24.83 0.17 -1.10 16 13 C -0.19 -6.75 10.41 22.19 0.23 -6.52 16 14 C -0.24 -7.20 10.91 22.19 0.24 -6.96 16 15 C -0.04 -0.99 12.09 66.97 0.81 -0.18 16 16 O -0.16 -4.85 10.65 -2.50 -0.03 -4.88 16 17 C 0.53 20.60 6.54 87.66 0.57 21.18 16 18 O -0.57 -27.18 15.67 -3.01 -0.05 -27.23 16 19 C -0.16 -4.26 5.13 -11.54 -0.06 -4.32 16 20 H 0.17 3.25 6.44 -2.39 -0.02 3.24 16 21 C -0.10 -2.09 9.73 30.62 0.30 -1.80 16 22 C 0.03 0.66 3.62 30.62 0.11 0.77 16 23 Cl -0.11 -3.73 28.18 -2.72 -0.08 -3.81 16 24 Cl -0.07 -1.53 29.29 -2.72 -0.08 -1.61 16 25 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 26 H 0.01 0.35 7.42 -2.39 -0.02 0.34 16 27 H 0.03 1.62 7.89 -2.39 -0.02 1.61 16 28 H 0.12 2.52 6.00 -2.39 -0.01 2.51 16 29 H 0.12 3.22 7.89 -2.38 -0.02 3.20 16 30 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.23 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.17 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.12 2.99 7.67 -2.39 -0.02 2.97 16 Total: -1.00 -72.54 332.91 5.21 -67.33 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.13 Total: 8.10 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.02 Total: -5.89 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.74 Total: -80.01 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.07 Total: -32.11 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -5.26 SS G_CDS: -0.16 Total: -5.42 kcal Total: -72.54 5.21 -67.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299267272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.139 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds