Wall clock time and date at job start Tue Mar 31 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46862 * 2 1 4 4 O 1.42903 * 109.46967 * 240.00451 * 2 1 3 5 5 C 1.35922 * 117.00233 * 85.96727 * 4 2 1 6 6 C 1.38722 * 120.05183 * 354.75947 * 5 4 2 7 7 C 1.38164 * 119.97792 * 180.27842 * 6 5 4 8 8 C 1.38262 * 120.08793 * 359.74375 * 7 6 5 9 9 C 1.38361 * 120.10682 * 359.95811 * 8 7 6 10 10 Cl 1.73598 * 119.99013 * 180.02562 * 9 8 7 11 11 C 1.38370 * 120.01559 * 0.04045 * 9 8 7 12 12 Cl 1.73596 * 120.04168 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47568 * 120.00095 * 2 1 3 14 14 O 1.21294 * 120.00186 * 119.99829 * 13 2 1 15 15 N 1.34784 * 119.99839 * 299.99908 * 13 2 1 16 16 C 1.46502 * 119.99975 * 0.02562 * 15 13 2 17 17 C 1.37100 * 119.99939 * 179.97438 * 15 13 2 18 18 H 1.08003 * 119.99824 * 23.55671 * 17 15 13 19 19 C 1.38945 * 119.99816 * 203.55785 * 17 15 13 20 20 N 1.31412 * 120.00574 * 10.15092 * 19 17 15 21 21 Si 1.86804 * 119.99719 * 190.15044 * 19 17 15 22 22 H 1.48503 * 109.47015 * 60.00092 * 21 19 17 23 23 H 1.48503 * 109.46993 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47032 * 299.99821 * 21 19 17 25 25 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47143 * 299.99770 * 1 2 3 27 27 H 1.08991 * 109.47795 * 60.00160 * 1 2 3 28 28 H 1.07997 * 120.01557 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.95328 * 179.72250 * 7 6 5 30 30 H 1.07999 * 119.94687 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47151 * 92.86369 * 16 15 13 32 32 H 1.09002 * 109.46774 * 212.86667 * 16 15 13 33 33 H 1.09002 * 109.46914 * 332.86080 * 16 15 13 34 34 H 0.96991 * 120.00619 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1317 0.0676 -2.2993 6 6 1.7015 1.3863 -2.3176 7 6 1.8245 2.1366 -3.4713 8 6 2.3806 1.5765 -4.6064 9 6 2.8165 0.2634 -4.5903 10 17 3.5149 -0.4367 -6.0171 11 6 2.6955 -0.4920 -3.4373 12 17 3.2416 -2.1397 -3.4165 13 6 2.0324 -0.7104 1.2304 14 8 2.7298 -1.6966 1.1191 15 7 1.7069 -0.2499 2.4546 16 6 0.8641 0.9409 2.5890 17 6 2.1635 -0.8965 3.5739 18 1 3.0527 -1.5071 3.5198 19 6 1.4824 -0.7661 4.7779 20 7 0.3000 -0.1933 4.8054 21 14 2.2475 -1.4052 6.3578 22 1 3.5381 -0.7113 6.5987 23 1 1.3269 -1.1458 7.4938 24 1 2.4858 -2.8659 6.2367 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.2662 1.8250 -1.4320 29 1 1.4853 3.1618 -3.4865 30 1 2.4752 2.1649 -5.5071 31 1 -0.1800 0.6394 2.6737 32 1 1.1563 1.4938 3.4818 33 1 0.9891 1.5754 1.7115 34 1 -0.1754 -0.1020 5.6459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299577571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:09 Heat of formation + Delta-G solvation = -57.941336 kcal Electronic energy + Delta-G solvation = -21913.096817 eV Core-core repulsion = 18284.441603 eV Total energy + Delta-G solvation = -3628.655213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72719 -40.32856 -38.73233 -37.47507 -37.35332 -36.69991 -34.17569 -32.67276 -31.55027 -30.78168 -28.13888 -27.00104 -25.20325 -23.96386 -23.39458 -20.94463 -19.66634 -18.96634 -17.94899 -17.54298 -17.23222 -16.76615 -16.50114 -16.13555 -15.99354 -15.66609 -15.17056 -14.94165 -14.75117 -14.25233 -13.82760 -13.63761 -13.24946 -13.10440 -12.99555 -12.95665 -12.87258 -12.63453 -12.51842 -12.29897 -12.21914 -12.13606 -12.09850 -11.86957 -11.76717 -11.01274 -10.36206 -9.82974 -9.73509 -9.33014 -8.35934 -6.03243 -0.13292 0.12879 0.74356 1.22661 1.37592 1.40859 1.50038 1.80705 1.94379 2.31781 2.42559 3.03900 3.07135 3.58389 3.76733 3.82468 3.92159 3.95354 3.98878 4.24957 4.30298 4.54291 4.64109 4.71232 4.90457 5.00166 5.05681 5.15280 5.22784 5.41694 5.42235 5.45793 5.99852 6.19476 6.46510 7.12275 7.37223 7.93558 8.64909 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.003301 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.195824 B = 8480.048340 C = 9176.044850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.118 0.882 4 O -0.300 6.300 5 C 0.131 3.869 6 C -0.199 4.199 7 C -0.044 4.044 8 C -0.134 4.134 9 C -0.004 4.004 10 Cl -0.046 7.046 11 C -0.097 4.097 12 Cl -0.061 7.061 13 C 0.433 3.567 14 O -0.623 6.623 15 N -0.450 5.450 16 C 0.113 3.887 17 C -0.348 4.348 18 H 0.068 0.932 19 C 0.006 3.994 20 N -0.890 5.890 21 Si 0.988 3.012 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.281 1.281 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.187 0.813 30 H 0.174 0.826 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 11.262 -17.060 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.027 3.973 3 H 0.135 0.865 4 O -0.213 6.213 5 C 0.084 3.916 6 C -0.217 4.217 7 C -0.061 4.061 8 C -0.153 4.153 9 C -0.031 4.031 10 Cl -0.017 7.017 11 C -0.125 4.125 12 Cl -0.032 7.032 13 C 0.221 3.779 14 O -0.510 6.510 15 N -0.169 5.169 16 C -0.030 4.030 17 C -0.476 4.476 18 H 0.086 0.914 19 C -0.197 4.197 20 N -0.528 5.528 21 Si 0.811 3.189 22 H -0.192 1.192 23 H -0.190 1.190 24 H -0.206 1.206 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.182 0.818 29 H 0.204 0.796 30 H 0.191 0.809 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.389 10.432 -17.024 20.014 hybrid contribution 0.516 -1.112 0.973 1.565 sum -0.873 9.320 -16.051 18.581 Atomic orbital electron populations 1.22517 0.91067 1.03688 1.05873 1.22188 0.96687 0.96591 0.81826 0.86486 1.86290 1.80778 1.37562 1.16654 1.18986 0.95180 0.91713 0.85764 1.21776 1.05593 0.91698 1.02676 1.21500 0.93667 1.01397 0.89577 1.21374 1.00561 0.91605 1.01727 1.20703 1.00933 0.94605 0.86879 1.98383 1.82434 1.84601 1.36253 1.20220 1.09271 0.88640 0.94377 1.98377 1.88411 1.17760 1.98683 1.20565 0.85796 0.86370 0.85135 1.90528 1.43555 1.30112 1.86761 1.43670 1.44803 1.24942 1.03509 1.21777 0.94902 0.85771 1.00500 1.19554 1.10149 1.30428 0.87495 0.91414 1.26013 0.95195 0.96661 1.01835 1.70001 1.11658 1.42607 1.28503 0.85089 0.78453 0.78385 0.76975 1.19194 1.19040 1.20637 0.93356 0.88070 0.88030 0.81768 0.79581 0.80850 0.92088 0.92574 0.90759 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 8.81 71.98 0.63 -4.47 16 2 C 0.09 3.08 1.83 29.85 0.05 3.14 16 3 H 0.12 3.33 5.50 -2.38 -0.01 3.32 16 4 O -0.30 -11.59 8.79 -73.64 -0.65 -12.24 16 5 C 0.13 3.92 6.60 22.52 0.15 4.07 16 6 C -0.20 -4.02 8.30 22.37 0.19 -3.83 16 7 C -0.04 -0.59 10.04 22.26 0.22 -0.37 16 8 C -0.13 -2.09 9.83 22.30 0.22 -1.87 16 9 C 0.00 -0.08 6.32 22.33 0.14 0.06 16 10 Cl -0.05 -0.99 27.96 -2.72 -0.08 -1.07 16 11 C -0.10 -2.89 6.34 22.43 0.14 -2.75 16 12 Cl -0.06 -2.07 27.51 -2.72 -0.07 -2.14 16 13 C 0.43 21.66 7.11 87.65 0.62 22.28 16 14 O -0.62 -37.81 16.20 15.96 0.26 -37.55 16 15 N -0.45 -22.65 3.02 -658.87 -1.99 -24.64 16 16 C 0.11 4.50 7.04 127.77 0.90 5.40 16 17 C -0.35 -19.70 9.27 84.04 0.78 -18.92 16 18 H 0.07 4.16 7.42 -2.91 -0.02 4.14 16 19 C 0.01 0.30 5.14 84.92 0.44 0.73 16 20 N -0.89 -44.94 10.60 21.66 0.23 -44.71 16 21 Si 0.99 41.84 29.56 68.60 2.03 43.87 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.10 2.83 4.58 -2.38 -0.01 2.82 16 27 H 0.10 2.15 7.04 -2.39 -0.02 2.13 16 28 H 0.16 2.62 5.48 -2.91 -0.02 2.61 16 29 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 31 H 0.06 2.50 6.48 -2.39 -0.02 2.48 16 32 H 0.06 2.39 7.15 -2.39 -0.02 2.37 16 33 H 0.07 2.19 5.79 -2.39 -0.01 2.17 16 34 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -73.63 313.58 5.38 -68.26 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.16 Total: 6.75 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 4.49 Total: 3.47 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.76 Total: -69.35 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.39 Total: -49.79 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.15 Total: -3.21 kcal Total: -73.63 5.38 -68.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299577571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.314 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds