Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.34773 * 120.00111 * 84.99828 * 12 2 1 14 14 O 1.21277 * 120.00090 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99847 * 179.97438 * 13 12 2 16 16 O 1.42901 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.35945 * 116.99814 * 179.97438 * 16 15 13 18 18 C 1.38789 * 120.06452 * 269.72370 * 17 16 15 19 19 Cl 1.73600 * 120.03378 * 359.97438 * 18 17 16 20 20 C 1.38267 * 119.93746 * 179.72467 * 18 17 16 21 21 C 1.38264 * 120.05851 * 0.55463 * 20 18 17 22 22 C 1.38254 * 120.12899 * 359.72201 * 21 20 18 23 23 C 1.38271 * 120.06457 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.03229 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 29 29 H 0.97003 * 119.99624 * 264.99510 * 12 2 1 30 30 H 1.08999 * 109.46659 * 299.99752 * 15 13 12 31 31 H 1.08988 * 109.47257 * 59.99966 * 15 13 12 32 32 H 1.07991 * 119.97284 * 180.29940 * 20 18 17 33 33 H 1.08005 * 119.93320 * 179.74949 * 21 20 18 34 34 H 1.08002 * 119.96612 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6499 -0.7284 -3.5876 16 8 2.6983 0.1900 -4.6813 17 6 3.1339 -0.2939 -5.8747 18 6 4.4838 -0.2458 -6.1935 19 17 5.6186 0.4334 -5.0689 20 6 4.9247 -0.7439 -7.4057 21 6 4.0207 -1.2793 -8.3045 22 6 2.6747 -1.3233 -7.9919 23 6 2.2287 -0.8314 -6.7791 24 17 0.5383 -0.8865 -6.3878 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1617 3.4844 29 1 2.2491 -1.6317 -1.1527 30 1 3.6492 -1.1201 -3.3980 31 1 1.9777 -1.5506 -3.8326 32 1 5.9756 -0.7112 -7.6523 33 1 4.3669 -1.6641 -9.2524 34 1 1.9708 -1.7417 -8.6962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299640243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = -80.627355 kcal Electronic energy + Delta-G solvation = -21316.032200 eV Core-core repulsion = 17686.393247 eV Total energy + Delta-G solvation = -3629.638953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -41.37017 -40.41181 -38.44189 -37.80171 -37.29746 -36.69394 -34.38358 -31.89495 -31.73808 -30.91089 -28.57062 -27.34401 -24.01160 -23.77563 -23.03944 -21.34423 -19.42493 -19.16926 -17.87038 -17.83182 -17.56615 -17.07177 -16.47295 -16.32573 -15.70382 -15.45481 -15.41209 -14.73612 -14.58963 -14.37834 -13.91256 -13.68842 -13.42999 -13.36973 -13.00854 -12.94095 -12.82795 -12.74749 -12.27999 -12.17324 -12.14457 -12.12606 -12.04468 -11.18545 -11.13088 -10.80542 -10.59759 -9.84717 -9.83484 -9.82687 -8.18297 -6.36377 -0.23980 -0.12698 0.79315 1.21663 1.45159 1.46044 1.56728 1.66312 1.80405 2.33239 2.43176 2.92900 3.12408 3.72975 3.78835 3.85348 3.99999 4.08892 4.13231 4.17176 4.30528 4.72809 4.90139 4.91407 4.99601 5.06717 5.14417 5.39452 5.45167 5.56711 5.64773 5.85721 6.06824 6.12936 6.70396 6.87314 7.29673 7.46901 8.88324 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020041 B = 0.003252 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.809547 B = 8608.340366 C = 9487.351775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.257 1.257 12 N -0.699 5.699 13 C 0.502 3.498 14 O -0.582 6.582 15 C 0.062 3.938 16 O -0.320 6.320 17 C 0.083 3.917 18 C -0.061 4.061 19 Cl -0.059 7.059 20 C -0.089 4.089 21 C -0.081 4.081 22 C -0.089 4.089 23 C -0.060 4.060 24 Cl -0.058 7.058 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.408 0.592 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.190 0.810 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 -10.542 -24.415 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.181 1.181 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.462 6.462 15 C -0.015 4.015 16 O -0.236 6.236 17 C 0.037 3.963 18 C -0.088 4.088 19 Cl -0.030 7.030 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.107 4.107 23 C -0.087 4.087 24 Cl -0.029 7.029 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.188 0.812 33 H 0.207 0.793 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.471 -9.352 -24.108 26.916 hybrid contribution 0.007 -0.205 1.422 1.437 sum 7.478 -9.557 -22.686 25.728 Atomic orbital electron populations 1.21909 0.98188 0.99648 0.99559 1.18383 0.91197 0.91936 0.81554 0.98419 1.21535 1.32707 1.13696 0.90569 0.90503 1.25832 0.94816 0.95596 1.02427 1.70060 1.36950 1.23979 1.24679 0.85304 0.77704 0.79255 0.77824 1.20404 1.20982 1.18121 1.46134 1.65380 1.14369 1.09133 1.20643 0.78192 0.87186 0.85157 1.90673 1.51863 1.18134 1.85558 1.22438 1.03396 0.91565 0.84118 1.86174 1.85797 1.35677 1.15928 1.18489 0.90438 0.99787 0.87558 1.21535 0.88874 1.03275 0.95113 1.98412 1.59318 1.83604 1.61656 1.21538 1.03047 0.96033 0.90109 1.21640 0.90773 0.96818 1.00688 1.21540 0.98009 0.97520 0.93635 1.21526 0.85730 1.03846 0.97646 1.98409 1.13093 1.97055 1.94338 0.93751 0.91347 0.97138 0.92508 0.75646 0.87912 0.87719 0.81205 0.79314 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.45 2.56 44.25 0.11 14.56 16 3 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -29.10 8.73 25.60 0.22 -28.88 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.34 11.32 21.44 0.24 -53.10 16 8 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 12 N -0.70 -29.70 5.07 -446.09 -2.26 -31.96 16 13 C 0.50 21.38 7.87 87.66 0.69 22.07 16 14 O -0.58 -31.11 16.16 16.02 0.26 -30.85 16 15 C 0.06 1.93 6.54 71.24 0.47 2.39 16 16 O -0.32 -10.75 8.51 -73.89 -0.63 -11.38 16 17 C 0.08 2.13 5.71 22.53 0.13 2.26 16 18 C -0.06 -1.29 6.33 22.41 0.14 -1.15 16 19 Cl -0.06 -1.45 28.50 -2.72 -0.08 -1.53 16 20 C -0.09 -1.11 9.83 22.28 0.22 -0.89 16 21 C -0.08 -0.66 10.04 22.28 0.22 -0.44 16 22 C -0.09 -1.09 9.83 22.28 0.22 -0.87 16 23 C -0.06 -1.26 6.33 22.41 0.14 -1.12 16 24 Cl -0.06 -1.39 28.50 -2.72 -0.08 -1.47 16 25 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 29 H 0.41 14.08 8.54 -92.71 -0.79 13.28 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.17 1.21 8.06 -2.92 -0.02 1.19 16 33 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16 34 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -74.52 332.23 3.52 -71.00 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.36 Total: 12.41 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 3.68 Total: 2.79 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.02 Total: -85.06 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.37 Total: -42.23 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.16 Total: -2.99 kcal Total: -74.52 3.52 -71.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299640243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.625 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds