Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.38477 * 119.82502 * 269.72767 * 15 12 11 17 17 C 1.37837 * 120.22202 * 179.76312 * 16 15 12 18 18 C 1.39718 * 119.87738 * 0.48533 * 17 16 15 19 19 C 1.47560 * 120.17336 * 179.74610 * 18 17 16 20 20 O 1.21490 * 119.99520 * 180.02562 * 19 18 17 21 21 O 1.34728 * 120.00359 * 0.02562 * 19 18 17 22 22 C 1.39882 * 119.65144 * 359.76844 * 18 17 16 23 23 F 1.35099 * 120.11460 * 179.97438 * 22 18 17 24 24 C 1.38211 * 119.82542 * 89.99728 * 15 12 11 25 25 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 27 27 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 28 28 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 29 29 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 30 30 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 31 31 H 1.08001 * 119.88745 * 359.97438 * 16 15 12 32 32 H 1.08007 * 120.05971 * 180.23411 * 17 16 15 33 33 H 0.96693 * 116.99913 * 179.97438 * 21 19 18 34 34 H 1.07997 * 119.93277 * 359.97438 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 4.7765 -6.1078 0.7597 17 6 5.7168 -6.3116 1.7467 18 6 5.3788 -7.0398 2.8903 19 6 6.3819 -7.2667 3.9484 20 8 6.0847 -7.9007 4.9412 21 8 7.6273 -6.7708 3.8136 22 6 4.0847 -7.5529 3.0265 23 9 3.7479 -8.2588 4.1281 24 6 3.1511 -7.3357 2.0294 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.5677 -4.9451 0.2190 31 1 5.0389 -5.5487 -0.1264 32 1 6.7142 -5.9126 1.6345 33 1 8.2494 -6.9450 4.5331 34 1 2.1511 -7.7305 2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311596907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -187.054304 kcal Electronic energy + Delta-G solvation = -23720.231975 eV Core-core repulsion = 19659.685335 eV Total energy + Delta-G solvation = -4060.546641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.30214 -40.73735 -39.03776 -37.25835 -36.52869 -35.86061 -35.54562 -32.82811 -32.30541 -31.12979 -29.24801 -25.69162 -24.59519 -23.54041 -22.03426 -21.26837 -19.73575 -18.74375 -18.47919 -17.70501 -17.26248 -16.90138 -16.43722 -16.33096 -16.23693 -15.62116 -15.55923 -14.91955 -14.66047 -14.37311 -14.09612 -13.91707 -13.62231 -13.11685 -12.99779 -12.66014 -12.28214 -12.10481 -12.02531 -11.97743 -11.90736 -11.41651 -11.36760 -11.17838 -10.93851 -10.70091 -10.54791 -10.04117 -9.67675 -9.35776 -9.32094 -9.09296 -8.47522 -6.14103 -4.18115 -0.34554 0.38378 0.63304 1.85444 2.39368 2.84976 3.13835 3.25338 3.32340 3.34420 3.57350 3.71500 3.99496 4.31586 4.36080 4.56107 4.57620 4.72040 4.97955 5.23046 5.29669 5.45344 5.47796 5.54907 5.60048 5.96533 6.05262 6.16683 6.32194 6.59827 7.23743 7.37468 7.47935 7.56242 7.83452 8.20147 8.87581 9.47068 10.97230 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003721 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.467517 B = 7523.020041 C = 8802.068693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.115 3.885 11 N -1.105 6.105 12 S 2.691 3.309 13 O -0.961 6.961 14 O -0.947 6.947 15 C -0.615 4.615 16 C -0.044 4.044 17 C -0.051 4.051 18 C -0.120 4.120 19 C 0.526 3.474 20 O -0.494 6.494 21 O -0.506 6.506 22 C 0.144 3.856 23 F -0.110 7.110 24 C -0.065 4.065 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.420 0.580 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.419 0.581 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -14.122 4.740 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.868 5.868 12 S 2.776 3.224 13 O -0.951 6.951 14 O -0.937 6.937 15 C -0.698 4.698 16 C -0.063 4.063 17 C -0.070 4.070 18 C -0.122 4.122 19 C 0.368 3.632 20 O -0.382 6.382 21 O -0.319 6.319 22 C 0.123 3.877 23 F -0.088 7.088 24 C -0.085 4.085 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.279 0.721 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.163 -14.678 4.019 18.874 hybrid contribution 0.784 0.880 1.588 1.978 sum 11.948 -13.798 5.608 19.094 Atomic orbital electron populations 1.69952 1.06108 1.26971 1.49988 1.24998 0.94876 0.99405 0.94937 0.86530 0.79759 0.83101 0.78235 1.20503 1.21198 1.19789 1.21060 0.93175 0.90429 1.51845 0.92216 1.19291 0.94038 0.90429 0.98366 1.21748 0.96265 0.82465 1.00508 1.55491 1.21530 1.21868 1.87928 1.02187 0.73323 0.72900 0.73942 1.93589 1.59385 1.55331 1.86749 1.93613 1.73718 1.85095 1.41255 1.31606 1.14203 1.07486 1.16484 1.21126 0.90662 0.95295 0.99198 1.21551 1.00979 0.93920 0.90571 1.19386 0.91879 1.04524 0.96438 1.20491 0.81484 0.76008 0.85185 1.90983 1.79864 1.37165 1.30186 1.84529 1.22325 1.73043 1.51960 1.17639 0.92006 0.93386 0.84631 1.91630 1.92325 1.74925 1.49927 1.20883 1.00420 0.96358 0.90800 0.92755 0.95428 0.95695 0.92811 0.90983 0.74421 0.82131 0.82304 0.72121 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.61 9.11 -34.44 -0.31 -13.92 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.40 5.12 -27.88 -0.14 0.26 16 10 C 0.11 2.01 6.16 -4.04 -0.02 1.98 16 11 N -1.11 -16.10 6.00 -10.61 -0.06 -16.17 16 12 S 2.69 36.46 5.73 -107.50 -0.62 35.85 16 13 O -0.96 -14.53 17.26 -57.17 -0.99 -15.51 16 14 O -0.95 -15.02 16.74 -57.17 -0.96 -15.98 16 15 C -0.61 -7.23 5.95 -39.50 -0.23 -7.46 16 16 C -0.04 -0.45 9.50 -39.64 -0.38 -0.83 16 17 C -0.05 -0.48 9.61 -39.18 -0.38 -0.86 16 18 C -0.12 -1.32 5.88 -104.93 -0.62 -1.94 16 19 C 0.53 5.61 8.27 34.53 0.29 5.89 16 20 O -0.49 -6.75 16.13 -19.26 -0.31 -7.06 16 21 O -0.51 -3.53 12.68 -40.57 -0.51 -4.04 16 22 C 0.14 1.75 7.29 -38.94 -0.28 1.46 16 23 F -0.11 -1.48 15.55 2.25 0.04 -1.44 16 24 C -0.06 -0.75 9.48 -39.56 -0.38 -1.12 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 30 H 0.42 5.65 8.65 -34.47 -0.30 5.36 16 31 H 0.16 1.44 7.59 -52.49 -0.40 1.04 16 32 H 0.16 1.06 7.61 -52.48 -0.40 0.66 16 33 H 0.42 1.02 9.11 45.56 0.42 1.43 16 34 H 0.16 1.64 7.60 -52.49 -0.40 1.24 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -34.40 324.87 -7.65 -42.05 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -2.29 Total: 1.54 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.56 Total: -15.01 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.67 Total: -40.69 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -2.77 Total: -42.59 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 36.46 SS G_CDS: -0.62 Total: 35.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.40 -7.65 -42.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311596907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.005 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds