Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99995 * 2 1 4 4 H 1.48496 * 109.47139 * 270.00188 * 3 2 1 5 5 H 1.48502 * 109.47156 * 29.99930 * 3 2 1 6 6 H 1.48499 * 109.47192 * 149.99524 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99482 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.38477 * 119.82502 * 269.72767 * 15 12 11 17 17 C 1.37837 * 120.22202 * 179.76312 * 16 15 12 18 18 C 1.39718 * 119.87738 * 0.48533 * 17 16 15 19 19 C 1.47560 * 120.17336 * 179.74610 * 18 17 16 20 20 O 1.21490 * 119.99520 * 180.02562 * 19 18 17 21 21 O 1.34728 * 120.00359 * 0.02562 * 19 18 17 22 22 C 1.39882 * 119.65144 * 359.76844 * 18 17 16 23 23 F 1.35099 * 120.11460 * 179.97438 * 22 18 17 24 24 C 1.38211 * 119.82542 * 89.99728 * 15 12 11 25 25 H 0.96996 * 120.00150 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 27 27 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 28 28 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 29 29 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 30 30 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 31 31 H 1.08001 * 119.88745 * 359.97438 * 16 15 12 32 32 H 1.08007 * 120.05971 * 180.23411 * 17 16 15 33 33 H 0.96693 * 116.99913 * 179.97438 * 21 19 18 34 34 H 1.07997 * 119.93277 * 359.97438 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9309 0.0012 12 16 2.2999 -6.3415 -0.3632 13 8 1.3392 -7.3810 -0.2378 14 8 3.0291 -6.0971 -1.5581 15 6 3.4954 -6.6136 0.9023 16 6 4.7765 -6.1078 0.7597 17 6 5.7168 -6.3116 1.7467 18 6 5.3788 -7.0398 2.8903 19 6 6.3819 -7.2667 3.9484 20 8 6.0847 -7.9007 4.9412 21 8 7.6273 -6.7708 3.8136 22 6 4.0847 -7.5529 3.0265 23 9 3.7479 -8.2588 4.1281 24 6 3.1511 -7.3357 2.0294 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5568 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.5677 -4.9451 0.2190 31 1 5.0389 -5.5487 -0.1264 32 1 6.7142 -5.9126 1.6345 33 1 8.2494 -6.9450 4.5331 34 1 2.1511 -7.7305 2.1318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311596907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -213.388886 kcal Electronic energy + Delta-G solvation = -23721.373928 eV Core-core repulsion = 19659.685335 eV Total energy + Delta-G solvation = -4061.688594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.24529 -41.52767 -39.86914 -38.44528 -37.25243 -37.05649 -36.98979 -34.69760 -33.16391 -31.97348 -30.97917 -26.55134 -26.38643 -24.37672 -22.93901 -22.83482 -20.81261 -19.64498 -19.37958 -18.76534 -18.34708 -18.13399 -17.78750 -17.29654 -17.17002 -16.84979 -16.45392 -16.42292 -15.76857 -15.56949 -15.42724 -14.96620 -14.49809 -14.39634 -13.99088 -13.87403 -13.41409 -13.34300 -13.27076 -13.19390 -12.99477 -12.94599 -12.74500 -12.44598 -12.38915 -12.24098 -11.81563 -11.45475 -11.27192 -10.90501 -10.58895 -10.31115 -10.18037 -8.16704 -6.26672 -1.22497 -0.71628 -0.20148 1.02666 1.47456 1.47877 1.58108 1.69188 1.88339 2.15815 2.46554 2.61202 2.72741 3.12894 3.19291 3.42355 3.69450 3.82349 3.85005 4.17823 4.22773 4.48474 4.60875 4.66561 4.68026 4.76011 4.88966 5.02665 5.34179 5.37004 5.55774 5.69471 5.85956 6.03327 6.26081 6.76299 6.90305 7.42917 8.95313 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003721 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.467517 B = 7523.020041 C = 8802.068693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.017 3.983 10 C 0.128 3.872 11 N -1.108 6.108 12 S 2.715 3.285 13 O -0.977 6.977 14 O -0.969 6.969 15 C -0.618 4.618 16 C -0.044 4.044 17 C -0.036 4.036 18 C -0.125 4.125 19 C 0.533 3.467 20 O -0.531 6.531 21 O -0.490 6.490 22 C 0.125 3.875 23 F -0.123 7.123 24 C -0.068 4.068 25 H 0.262 0.738 26 H 0.001 0.999 27 H 0.007 0.993 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.424 0.576 31 H 0.179 0.821 32 H 0.193 0.807 33 H 0.440 0.560 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.183 -13.766 4.796 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.091 0.909 9 C -0.022 4.022 10 C 0.003 3.997 11 N -0.870 5.870 12 S 2.803 3.197 13 O -0.967 6.967 14 O -0.959 6.959 15 C -0.705 4.705 16 C -0.063 4.063 17 C -0.054 4.054 18 C -0.127 4.127 19 C 0.377 3.623 20 O -0.422 6.422 21 O -0.305 6.305 22 C 0.104 3.896 23 F -0.101 7.101 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.260 0.740 31 H 0.196 0.804 32 H 0.210 0.790 33 H 0.304 0.696 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.759 -14.318 4.052 20.266 hybrid contribution 0.061 0.721 1.581 1.739 sum 13.820 -13.597 5.634 20.189 Atomic orbital electron populations 1.70087 1.07809 1.27736 1.51641 1.25906 0.95648 1.03237 0.94830 0.85489 0.78850 0.78632 0.78334 1.20089 1.21468 1.18225 1.21601 0.94099 0.91584 1.50523 0.90909 1.19180 0.94625 0.92180 0.96225 1.21430 0.94978 0.81525 1.01813 1.55363 1.21972 1.21420 1.88228 1.01242 0.72887 0.71914 0.73607 1.93567 1.60486 1.55541 1.87128 1.93581 1.74043 1.85238 1.43006 1.31215 1.14381 1.08928 1.15945 1.21464 0.90103 0.94734 1.00006 1.21874 1.02039 0.92448 0.89079 1.19612 0.91605 1.04341 0.97183 1.20424 0.82276 0.75288 0.84355 1.90977 1.80692 1.38967 1.31564 1.84479 1.21176 1.71938 1.52894 1.17832 0.92894 0.94235 0.84598 1.91595 1.92523 1.75413 1.50597 1.20962 1.00880 0.96323 0.90644 0.92889 0.98015 0.97484 0.90754 0.90408 0.74012 0.80362 0.79012 0.69634 0.81071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.66 13.29 21.45 0.28 -53.37 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.96 41.37 29.54 68.60 2.03 43.39 16 4 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.54 -27.58 9.11 25.60 0.23 -27.34 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 0.77 5.12 29.85 0.15 0.93 16 10 C 0.13 4.32 6.16 86.38 0.53 4.85 16 11 N -1.11 -31.51 6.00 -187.48 -1.12 -32.63 16 12 S 2.71 70.58 5.73 -56.49 -0.32 70.25 16 13 O -0.98 -28.95 17.26 -128.00 -2.21 -31.16 16 14 O -0.97 -29.35 16.74 -128.00 -2.14 -31.49 16 15 C -0.62 -13.44 5.95 22.32 0.13 -13.30 16 16 C -0.04 -0.78 9.50 22.23 0.21 -0.57 16 17 C -0.04 -0.55 9.61 22.53 0.22 -0.33 16 18 C -0.13 -2.49 5.88 -20.06 -0.12 -2.61 16 19 C 0.53 10.27 8.27 70.28 0.58 10.86 16 20 O -0.53 -14.03 16.13 19.87 0.32 -13.71 16 21 O -0.49 -5.20 12.68 -56.38 -0.71 -5.91 16 22 C 0.13 2.92 7.29 22.69 0.17 3.08 16 23 F -0.12 -3.31 15.55 44.97 0.70 -2.61 16 24 C -0.07 -1.50 9.48 22.28 0.21 -1.29 16 25 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.08 2.55 7.76 -2.39 -0.02 2.53 16 30 H 0.42 11.43 8.65 -96.74 -0.84 10.59 16 31 H 0.18 2.55 7.59 -2.91 -0.02 2.53 16 32 H 0.19 1.62 7.61 -2.91 -0.02 1.59 16 33 H 0.44 0.71 9.11 -74.06 -0.67 0.04 16 34 H 0.17 3.36 7.60 -2.91 -0.02 3.34 16 Total: -1.00 -73.80 324.87 -0.73 -74.53 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.33 Total: 7.88 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.78 Total: -25.17 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -0.84 Total: -86.01 kcal Atomic # 8 Polarization: -77.53 SS G_CDS: -4.75 Total: -82.27 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.70 Total: -2.61 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 70.58 SS G_CDS: -0.32 Total: 70.25 kcal Total: -73.80 -0.73 -74.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311596907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.855 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds