Wall clock time and date at job start Tue Mar 31 2020 11:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99558 * 2 1 4 4 C 1.53010 * 109.46834 * 179.97438 * 3 2 1 5 5 N 1.46490 * 109.47087 * 64.99933 * 4 3 2 6 6 C 1.36885 * 120.00099 * 285.29401 * 5 4 3 7 7 H 1.08001 * 120.00090 * 315.89636 * 6 5 4 8 8 C 1.39040 * 120.00228 * 135.90401 * 6 5 4 9 9 N 1.31371 * 120.00015 * 338.97711 * 8 6 5 10 10 Si 1.86795 * 120.00209 * 158.98497 * 8 6 5 11 11 H 1.48492 * 109.47293 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47428 * 119.99688 * 10 8 6 13 13 H 1.48507 * 109.47170 * 239.99478 * 10 8 6 14 14 C 1.34774 * 120.00027 * 105.28893 * 5 4 3 15 15 O 1.21599 * 120.00127 * 186.47285 * 14 5 4 16 16 C 1.47657 * 119.99997 * 6.20094 * 14 5 4 17 17 C 1.39696 * 120.15622 * 322.06580 * 16 14 5 18 18 C 1.37878 * 119.88713 * 179.76540 * 17 16 14 19 19 C 1.38428 * 120.19768 * 0.51159 * 18 17 16 20 20 C 1.38390 * 120.31679 * 359.74494 * 19 18 17 21 21 Cl 1.73594 * 119.94103 * 179.97438 * 20 19 18 22 22 C 1.38245 * 120.11043 * 359.97438 * 20 19 18 23 23 Cl 1.73602 * 120.10012 * 180.02562 * 22 20 19 24 24 H 1.09006 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47625 * 300.00330 * 1 2 3 26 26 H 1.09004 * 109.47067 * 60.00396 * 1 2 3 27 27 H 1.09003 * 109.47207 * 60.00009 * 3 2 1 28 28 H 1.08995 * 109.47103 * 299.99388 * 3 2 1 29 29 H 1.09006 * 109.46959 * 304.99706 * 4 3 2 30 30 H 1.09000 * 109.47011 * 185.00231 * 4 3 2 31 31 H 0.97001 * 120.00171 * 185.04050 * 9 8 6 32 32 H 1.08004 * 120.05375 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.90082 * 180.23828 * 18 17 16 34 34 H 1.08000 * 119.83813 * 179.75974 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 3.8035 -0.7795 -1.4466 7 1 4.0372 -1.4753 -0.6544 8 6 3.3268 -1.2487 -2.6656 9 7 2.6637 -0.4444 -3.4651 10 14 3.6290 -3.0227 -3.1664 11 1 4.3947 -3.7148 -2.0989 12 1 2.3275 -3.7091 -3.3671 13 1 4.4055 -3.0544 -4.4319 14 6 4.5530 1.3161 -2.2093 15 8 4.8119 0.8270 -3.2921 16 6 4.8645 2.7353 -1.9467 17 6 3.9870 3.5186 -1.1932 18 6 4.2858 4.8420 -0.9473 19 6 5.4473 5.3993 -1.4537 20 6 6.3199 4.6324 -2.2057 21 17 7.7735 5.3414 -2.8366 22 6 6.0360 3.3026 -2.4553 23 17 7.1312 2.3406 -3.3982 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8508 0.5687 0.8428 30 1 3.9784 2.1767 0.0903 31 1 2.2682 -0.7892 -4.2810 32 1 3.0781 3.0872 -0.8004 33 1 3.6094 5.4468 -0.3615 34 1 5.6737 6.4375 -1.2608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318939364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:30 Heat of formation + Delta-G solvation = -44.309423 kcal Electronic energy + Delta-G solvation = -22733.944621 eV Core-core repulsion = 19105.880531 eV Total energy + Delta-G solvation = -3628.064089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23939 -39.33110 -38.38910 -37.47419 -37.39890 -35.99358 -34.11946 -31.94058 -31.70944 -30.38505 -27.27915 -26.74243 -24.61949 -23.72845 -23.39437 -21.35535 -19.06836 -18.09806 -17.87770 -16.98133 -16.86274 -16.81630 -16.46376 -15.92547 -15.77858 -15.54026 -15.12723 -15.02933 -14.54007 -14.29719 -13.72661 -13.27838 -13.01674 -12.90426 -12.86802 -12.77452 -12.60197 -12.56196 -12.50038 -12.14652 -12.07192 -12.00029 -11.71844 -11.70301 -10.74409 -10.29986 -10.08826 -9.80591 -9.67513 -9.03592 -8.11240 -5.79420 -0.15041 -0.04903 0.85055 1.27990 1.37579 1.45878 1.51865 2.16944 2.39621 2.78951 3.00675 3.17440 3.36100 3.77877 3.87553 4.06308 4.20554 4.30515 4.35525 4.41637 4.51214 4.55492 4.63340 4.71021 4.74032 4.93373 4.95340 5.07094 5.15526 5.24929 5.59489 5.62484 6.28302 6.58516 7.10432 7.24729 7.72513 8.36689 8.97378 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.005654 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.517181 B = 4951.213051 C = 6408.163629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.058 3.942 4 C 0.075 3.925 5 N -0.446 5.446 6 C -0.328 4.328 7 H 0.074 0.926 8 C 0.037 3.963 9 N -0.853 5.853 10 Si 0.953 3.047 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.300 1.300 14 C 0.486 3.514 15 O -0.558 6.558 16 C -0.107 4.107 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.084 4.084 20 C -0.043 4.043 21 Cl -0.050 7.050 22 C -0.023 4.023 23 Cl -0.057 7.057 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.254 0.746 32 H 0.156 0.844 33 H 0.192 0.808 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 14.427 9.823 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.019 4.019 4 C -0.047 4.047 5 N -0.166 5.166 6 C -0.456 4.456 7 H 0.091 0.909 8 C -0.171 4.171 9 N -0.488 5.488 10 Si 0.780 3.220 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.227 1.227 14 C 0.274 3.726 15 O -0.438 6.438 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.071 4.071 21 Cl -0.021 7.021 22 C -0.052 4.052 23 Cl -0.028 7.028 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.063 0.937 32 H 0.173 0.827 33 H 0.209 0.791 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.563 13.966 8.950 16.597 hybrid contribution 0.085 -1.210 -1.077 1.622 sum 0.648 12.755 7.874 15.004 Atomic orbital electron populations 1.22731 0.81415 1.02532 0.99680 1.88121 1.19639 1.27764 1.95150 1.22897 0.93964 0.85342 0.99724 1.22482 0.93459 1.00351 0.88449 1.43262 1.51058 1.07487 1.14817 1.18919 1.45058 0.81669 0.99958 0.90871 1.25747 0.93740 1.00711 0.96874 1.69931 1.29998 1.36761 1.12126 0.85508 0.77839 0.80825 0.77820 1.18508 1.20178 1.22712 1.18302 0.82160 0.85818 0.86298 1.90648 1.55300 1.73415 1.24443 1.20271 0.95003 0.95865 1.00077 1.22078 0.99368 0.94956 0.96111 1.21653 0.96733 0.93398 0.98671 1.21587 0.92521 1.01363 0.94783 1.20865 0.92536 0.90996 1.02695 1.98365 1.35056 1.82805 1.85833 1.20939 0.93550 0.91667 0.98993 1.98381 1.61659 1.71891 1.70852 0.90233 0.92016 0.95749 0.89554 0.95250 0.91336 0.86255 0.93724 0.82679 0.79127 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.26 16 2 O -0.39 -15.50 9.47 -148.98 -1.41 -16.91 16 3 C 0.06 1.95 5.31 71.99 0.38 2.33 16 4 C 0.08 2.75 5.36 86.38 0.46 3.22 16 5 N -0.45 -22.08 2.55 -639.01 -1.63 -23.72 16 6 C -0.33 -18.27 8.00 84.10 0.67 -17.60 16 7 H 0.07 4.06 7.92 -2.91 -0.02 4.03 16 8 C 0.04 2.11 4.30 84.95 0.36 2.47 16 9 N -0.85 -51.84 11.72 21.68 0.25 -51.58 16 10 Si 0.95 47.18 29.61 68.60 2.03 49.21 16 11 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.30 -15.55 7.11 99.48 0.71 -14.85 16 14 C 0.49 24.97 6.51 86.73 0.56 25.54 16 15 O -0.56 -33.92 12.70 -4.03 -0.05 -33.97 16 16 C -0.11 -4.28 5.40 -20.07 -0.11 -4.39 16 17 C -0.11 -3.06 7.35 22.54 0.17 -2.89 16 18 C -0.09 -1.63 10.03 22.23 0.22 -1.41 16 19 C -0.08 -1.66 9.82 22.35 0.22 -1.44 16 20 C -0.04 -1.23 6.32 22.31 0.14 -1.09 16 21 Cl -0.05 -1.28 27.95 -2.72 -0.08 -1.36 16 22 C -0.02 -0.85 6.34 22.64 0.14 -0.71 16 23 Cl -0.06 -2.39 25.76 -2.72 -0.07 -2.46 16 24 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 1.08 7.20 -2.39 -0.02 1.06 16 29 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.12 3.57 4.00 -2.39 -0.01 3.56 16 31 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.16 4.25 3.83 -2.91 -0.01 4.24 16 33 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -78.08 314.91 4.67 -73.41 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.15 Total: 1.09 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.48 Total: 6.29 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.38 Total: -75.30 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.46 Total: -50.89 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 17 Polarization: -3.67 SS G_CDS: -0.15 Total: -3.81 kcal Total: -78.08 4.67 -73.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318939364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.103 kcal (2) G-P(sol) polarization free energy of solvation -78.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds