Wall clock time and date at job start Tue Mar 31 2020 11:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00117 * 2 1 4 4 C 1.53003 * 109.47375 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47116 * 64.99708 * 4 3 2 6 6 C 1.36881 * 119.99641 * 282.31552 * 5 4 3 7 7 H 1.08001 * 120.00241 * 315.10071 * 6 5 4 8 8 C 1.39044 * 120.00087 * 135.10915 * 6 5 4 9 9 N 1.31370 * 119.99919 * 338.05896 * 8 6 5 10 10 Si 1.86794 * 120.00212 * 158.05665 * 8 6 5 11 11 H 1.48493 * 109.47330 * 65.00117 * 10 8 6 12 12 H 1.48499 * 109.47173 * 185.00343 * 10 8 6 13 13 H 1.48507 * 109.47005 * 305.00143 * 10 8 6 14 14 C 1.34775 * 119.99887 * 102.31594 * 5 4 3 15 15 O 1.21609 * 119.99683 * 186.71857 * 14 5 4 16 16 C 1.47666 * 120.00249 * 6.71267 * 14 5 4 17 17 C 1.39706 * 120.13082 * 323.47796 * 16 14 5 18 18 C 1.37864 * 119.88291 * 180.02562 * 17 16 14 19 19 C 1.38520 * 120.15563 * 359.97438 * 18 17 16 20 20 Cl 1.73593 * 119.86785 * 180.27658 * 19 18 17 21 21 C 1.38621 * 120.26495 * 0.02562 * 19 18 17 22 22 Cl 1.73601 * 119.94370 * 180.02562 * 21 19 18 23 23 C 1.38009 * 120.11020 * 359.97438 * 21 19 18 24 24 H 1.09003 * 109.46678 * 60.00719 * 1 2 3 25 25 H 1.08999 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46913 * 300.00395 * 1 2 3 27 27 H 1.09007 * 109.47452 * 59.99630 * 3 2 1 28 28 H 1.09005 * 109.46785 * 299.99698 * 3 2 1 29 29 H 1.09003 * 109.46576 * 304.99553 * 4 3 2 30 30 H 1.08995 * 109.46948 * 184.99973 * 4 3 2 31 31 H 0.96993 * 119.99994 * 185.04911 * 9 8 6 32 32 H 1.07997 * 120.05798 * 0.04302 * 17 16 14 33 33 H 1.07997 * 119.92031 * 180.02562 * 18 17 16 34 34 H 1.07997 * 120.07535 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2508 6 6 3.8594 -0.7891 -1.4222 7 1 4.1531 -1.4614 -0.6296 8 6 3.3622 -1.2980 -2.6168 9 7 2.6196 -0.5428 -3.3940 10 14 3.7502 -3.0555 -3.1168 11 1 3.1274 -3.9943 -2.1494 12 1 3.2100 -3.3143 -4.4756 13 1 5.2218 -3.2550 -3.1228 14 6 4.4982 1.3249 -2.2333 15 8 4.7510 0.8313 -3.3156 16 6 4.7625 2.7582 -1.9957 17 6 3.8915 3.5099 -1.2031 18 6 4.1429 4.8478 -0.9850 19 6 5.2568 5.4476 -1.5493 20 17 5.5700 7.1310 -1.2639 21 6 6.1251 4.7076 -2.3367 22 17 7.5189 5.4676 -3.0393 23 6 5.8840 3.3676 -2.5622 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8463 -0.8901 29 1 3.8508 0.5685 0.8428 30 1 3.9785 2.1765 0.0902 31 1 2.2124 -0.9187 -4.1900 32 1 3.0231 3.0437 -0.7618 33 1 3.4703 5.4294 -0.3721 34 1 6.5607 2.7918 -3.1762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318946858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:33 Heat of formation + Delta-G solvation = -48.088511 kcal Electronic energy + Delta-G solvation = -22403.171795 eV Core-core repulsion = 18774.943832 eV Total energy + Delta-G solvation = -3628.227963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34201 -39.45730 -38.43480 -37.58967 -37.45406 -36.14266 -34.12431 -32.14072 -31.75673 -30.44728 -27.28894 -26.77472 -24.60910 -23.96096 -23.41836 -21.37324 -19.12609 -18.27344 -17.98706 -17.06171 -16.91541 -16.86620 -16.46943 -15.93220 -15.75138 -15.61597 -15.12516 -14.93445 -14.71905 -14.44389 -13.88689 -13.41808 -13.08720 -12.96426 -12.88125 -12.81959 -12.65331 -12.61589 -12.50581 -12.22006 -12.13491 -12.05063 -11.84353 -11.73400 -10.75954 -10.30718 -10.19976 -10.04737 -9.68962 -9.12634 -8.14991 -5.84153 -0.35078 -0.00683 0.74373 1.08436 1.40322 1.48155 1.51153 2.00890 2.38289 2.72296 2.98305 3.14943 3.32220 3.57999 3.84313 3.98711 4.09191 4.19165 4.36254 4.41234 4.50943 4.55679 4.64672 4.66715 4.70221 4.83560 4.88794 4.93570 5.11615 5.21869 5.43235 5.57972 6.24866 6.57518 7.05934 7.17300 7.66625 8.27850 8.93655 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004532 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.879539 B = 6176.620276 C = 7485.551192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.054 3.946 4 C 0.074 3.926 5 N -0.438 5.438 6 C -0.339 4.339 7 H 0.078 0.922 8 C 0.037 3.963 9 N -0.854 5.854 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.484 3.516 15 O -0.584 6.584 16 C -0.096 4.096 17 C -0.101 4.101 18 C -0.084 4.084 19 C -0.029 4.029 20 Cl -0.038 7.038 21 C -0.034 4.034 22 Cl -0.045 7.045 23 C -0.072 4.072 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.256 0.744 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 13.542 9.291 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.023 4.023 4 C -0.049 4.049 5 N -0.157 5.157 6 C -0.466 4.466 7 H 0.096 0.904 8 C -0.171 4.171 9 N -0.488 5.488 10 Si 0.784 3.216 11 H -0.185 1.185 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.274 3.726 15 O -0.466 6.466 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.102 4.102 19 C -0.057 4.057 20 Cl -0.009 7.009 21 C -0.062 4.062 22 Cl -0.016 7.016 23 C -0.092 4.092 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.065 0.935 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.314 13.336 8.540 15.839 hybrid contribution 0.028 -0.790 -0.919 1.212 sum 0.343 12.546 7.620 14.683 Atomic orbital electron populations 1.22731 0.81374 1.02539 0.99699 1.88119 1.19661 1.27652 1.95155 1.22946 0.94039 0.85459 0.99881 1.22531 0.93386 1.00477 0.88490 1.43279 1.52031 1.06628 1.13807 1.18955 1.44484 0.81315 1.01873 0.90412 1.25833 0.93343 1.01116 0.96760 1.69915 1.27165 1.37806 1.13915 0.85557 0.78358 0.80386 0.77281 1.18538 1.21717 1.20633 1.18450 0.82035 0.86124 0.86022 1.90610 1.56111 1.74398 1.25512 1.20333 0.96358 0.94617 0.98706 1.22093 0.99751 0.93745 0.96323 1.21309 0.95625 0.93803 0.99489 1.20986 0.97030 0.87023 1.00655 1.98378 1.95365 1.12320 1.94790 1.20584 0.92277 0.92636 1.00696 1.98369 1.39549 1.81008 1.82714 1.20901 0.97283 0.92419 0.98602 0.95695 0.90242 0.92029 0.89431 0.95092 0.90755 0.86170 0.93492 0.81925 0.79777 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 11.01 113.37 1.25 2.26 16 2 O -0.39 -15.26 9.60 -148.98 -1.43 -16.69 16 3 C 0.05 1.78 5.22 71.98 0.38 2.15 16 4 C 0.07 2.62 5.34 86.38 0.46 3.08 16 5 N -0.44 -21.19 2.53 -638.99 -1.61 -22.80 16 6 C -0.34 -18.43 8.12 84.10 0.68 -17.75 16 7 H 0.08 4.16 7.92 -2.91 -0.02 4.14 16 8 C 0.04 2.11 4.26 84.96 0.36 2.47 16 9 N -0.85 -51.08 11.86 21.68 0.26 -50.82 16 10 Si 0.96 45.94 29.61 68.60 2.03 47.97 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.48 24.40 6.83 86.73 0.59 25.00 16 15 O -0.58 -35.35 14.47 -4.06 -0.06 -35.41 16 16 C -0.10 -3.69 5.43 -20.09 -0.11 -3.80 16 17 C -0.10 -2.91 7.37 22.54 0.17 -2.74 16 18 C -0.08 -1.87 9.81 22.25 0.22 -1.65 16 19 C -0.03 -0.72 6.33 22.43 0.14 -0.57 16 20 Cl -0.04 -0.78 27.94 -2.72 -0.08 -0.86 16 21 C -0.03 -1.00 6.32 22.31 0.14 -0.86 16 22 Cl -0.05 -1.20 27.94 -2.72 -0.08 -1.27 16 23 C -0.07 -2.55 9.40 22.56 0.21 -2.34 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.03 1.11 7.11 -2.38 -0.02 1.10 16 29 H 0.07 2.54 8.13 -2.39 -0.02 2.53 16 30 H 0.12 3.47 4.11 -2.39 -0.01 3.46 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.16 4.42 3.44 -2.91 -0.01 4.41 16 33 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.13 4.97 8.02 -2.91 -0.02 4.94 16 Total: -1.00 -72.62 318.38 4.67 -67.94 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.15 Total: 6.72 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.49 Total: 5.24 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.36 Total: -73.63 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -1.49 Total: -52.11 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.15 Total: -2.13 kcal Total: -72.62 4.67 -67.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318946858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.855 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds