Wall clock time and date at job start Tue Mar 31 2020 11:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99661 * 2 1 4 4 C 1.53001 * 109.46715 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47434 * 64.99790 * 4 3 2 6 6 C 1.36885 * 119.99931 * 264.50440 * 5 4 3 7 7 H 1.07993 * 120.00038 * 141.11079 * 6 5 4 8 8 C 1.39044 * 119.99840 * 321.10800 * 6 5 4 9 9 N 1.31367 * 119.99937 * 339.72714 * 8 6 5 10 10 Si 1.86799 * 119.99859 * 159.73073 * 8 6 5 11 11 H 1.48499 * 109.47370 * 59.99695 * 10 8 6 12 12 H 1.48501 * 109.47214 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46965 * 299.99749 * 10 8 6 14 14 C 1.34773 * 119.99979 * 84.50099 * 5 4 3 15 15 O 1.21600 * 120.00058 * 5.25294 * 14 5 4 16 16 C 1.47659 * 119.99913 * 185.25962 * 14 5 4 17 17 C 1.39688 * 120.15222 * 315.81801 * 16 14 5 18 18 C 1.37990 * 119.84259 * 179.77260 * 17 16 14 19 19 Cl 1.73594 * 119.92014 * 180.23317 * 18 17 16 20 20 C 1.38551 * 120.16346 * 0.50879 * 18 17 16 21 21 C 1.38272 * 120.31238 * 359.74796 * 20 18 17 22 22 C 1.38133 * 120.15305 * 359.97438 * 21 20 18 23 23 Cl 1.73602 * 120.08132 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47054 * 300.00301 * 1 2 3 25 25 H 1.08998 * 109.46824 * 59.99831 * 1 2 3 26 26 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47221 * 60.00189 * 3 2 1 28 28 H 1.08996 * 109.47148 * 299.99341 * 3 2 1 29 29 H 1.09004 * 109.47288 * 304.99479 * 4 3 2 30 30 H 1.08997 * 109.46972 * 185.00052 * 4 3 2 31 31 H 0.97005 * 119.99773 * 179.97438 * 9 8 6 32 32 H 1.07998 * 120.07539 * 0.02562 * 17 16 14 33 33 H 1.07992 * 119.84542 * 179.72338 * 20 18 17 34 34 H 1.07999 * 119.92046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2051 -0.7841 -1.3048 7 1 3.9179 -1.3473 -2.1803 8 6 4.8080 -1.4287 -0.2304 9 7 5.5079 -0.7385 0.6410 10 14 4.6228 -3.2763 -0.0263 11 1 5.1821 -3.9645 -1.2174 12 1 5.3543 -3.7158 1.1890 13 1 3.1840 -3.6171 0.1123 14 6 4.1548 1.3214 -2.3532 15 8 4.0441 2.5304 -2.2842 16 6 4.4853 0.6828 -3.6429 17 6 5.4416 -0.3340 -3.6976 18 6 5.7422 -0.9297 -4.9055 19 17 6.9258 -2.1976 -4.9749 20 6 5.1056 -0.5144 -6.0640 21 6 4.1619 0.4951 -6.0182 22 6 3.8469 1.0965 -4.8152 23 17 2.6621 2.3642 -4.7601 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5683 0.8410 30 1 3.9785 2.1765 0.0889 31 1 5.9282 -1.1882 1.3908 32 1 5.9416 -0.6559 -2.7961 33 1 5.3480 -0.9811 -7.0072 34 1 3.6699 0.8141 -6.9252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318956019.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:37 Heat of formation + Delta-G solvation = -56.130035 kcal Electronic energy + Delta-G solvation = -22632.374667 eV Core-core repulsion = 19003.797997 eV Total energy + Delta-G solvation = -3628.576670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57245 -38.01627 -36.89910 -36.32260 -35.74343 -34.77403 -31.69684 -31.25706 -30.06846 -28.94113 -25.86282 -24.98609 -23.53530 -22.41176 -21.53964 -19.38120 -17.96932 -16.36794 -16.19595 -15.64564 -15.51929 -15.27935 -14.99653 -14.43862 -14.35377 -13.96854 -13.72948 -13.41111 -13.06133 -12.76927 -12.07940 -12.03952 -11.91734 -11.67024 -11.50175 -11.19342 -11.07364 -11.03547 -10.76376 -10.66932 -10.53265 -10.46815 -10.38741 -10.12459 -9.18973 -9.00975 -8.72058 -8.49205 -8.22421 -7.56929 -6.43710 -4.08460 1.18427 1.46229 2.32644 2.59666 3.15840 3.22909 3.28380 3.52496 4.08052 4.11531 4.44592 4.59435 4.93497 5.06367 5.21019 5.54948 5.57808 5.64579 5.71471 5.85653 5.96488 6.02311 6.07005 6.16081 6.26452 6.30937 6.50002 6.56027 6.70003 6.96600 7.17690 7.39493 7.74243 7.92164 8.29140 9.00916 9.37368 9.80274 10.58971 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.007637 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.729027 B = 3665.511644 C = 5562.834312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.119 3.881 5 N -0.412 5.412 6 C -0.332 4.332 7 H 0.088 0.912 8 C 0.054 3.946 9 N -0.856 5.856 10 Si 0.908 3.092 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.503 3.497 15 O -0.584 6.584 16 C -0.066 4.066 17 C -0.042 4.042 18 C -0.049 4.049 19 Cl -0.073 7.073 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.003 4.003 23 Cl -0.053 7.053 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.272 0.728 32 H 0.168 0.832 33 H 0.136 0.864 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -0.980 -7.473 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.005 4.005 5 N -0.129 5.129 6 C -0.460 4.460 7 H 0.106 0.894 8 C -0.153 4.153 9 N -0.491 5.491 10 Si 0.734 3.266 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.291 3.709 15 O -0.470 6.470 16 C -0.070 4.070 17 C -0.061 4.061 18 C -0.076 4.076 19 Cl -0.044 7.044 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.032 4.032 23 Cl -0.024 7.024 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.154 0.846 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.128 -0.588 -7.184 7.858 hybrid contribution -0.406 -0.850 0.182 0.960 sum -3.534 -1.438 -7.002 7.974 Atomic orbital electron populations 1.22643 0.83323 1.01762 0.98869 1.88130 1.17471 1.27652 1.95057 1.23041 0.96342 0.84431 0.98856 1.21442 0.89266 0.99277 0.90512 1.43160 1.55093 1.07378 1.07234 1.19279 1.39224 0.82221 1.05228 0.89422 1.25261 0.93690 0.99889 0.96446 1.69897 1.27673 1.37257 1.14292 0.86291 0.79072 0.83153 0.78120 1.19431 1.20949 1.19432 1.17956 0.82189 0.86286 0.84448 1.90672 1.57064 1.13404 1.85854 1.19940 0.96663 0.96320 0.94045 1.21731 0.95066 0.91845 0.97493 1.20895 0.96333 0.95107 0.95216 1.98350 1.56665 1.50691 1.98738 1.20940 0.96353 0.97152 0.97343 1.20770 0.99255 0.97213 0.96507 1.21038 0.94630 0.93376 0.94114 1.98363 1.55397 1.49905 1.98765 0.95127 0.94952 0.90418 0.94094 0.93962 0.87070 0.90754 0.91778 0.81492 0.84648 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.63 10.44 -35.23 -0.37 -8.00 16 3 C 0.05 1.04 6.24 37.16 0.23 1.27 16 4 C 0.12 2.73 5.32 -4.04 -0.02 2.71 16 5 N -0.41 -10.02 2.47 -115.95 -0.29 -10.31 16 6 C -0.33 -8.09 6.37 -15.00 -0.10 -8.19 16 7 H 0.09 2.14 6.54 -52.49 -0.34 1.79 16 8 C 0.05 1.32 4.91 -17.45 -0.09 1.23 16 9 N -0.86 -21.61 11.57 55.50 0.64 -20.96 16 10 Si 0.91 19.44 29.60 -169.99 -5.03 14.41 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.50 12.06 6.83 -12.42 -0.08 11.98 16 15 O -0.58 -14.91 15.18 5.28 0.08 -14.83 16 16 C -0.07 -1.38 5.21 -104.94 -0.55 -1.93 16 17 C -0.04 -0.83 7.59 -39.13 -0.30 -1.12 16 18 C -0.05 -0.81 6.31 -39.56 -0.25 -1.06 16 19 Cl -0.07 -1.11 28.95 -51.86 -1.50 -2.62 16 20 C -0.10 -1.40 9.82 -39.45 -0.39 -1.79 16 21 C -0.12 -1.75 9.82 -39.61 -0.39 -2.14 16 22 C 0.00 -0.06 6.34 -39.05 -0.25 -0.31 16 23 Cl -0.05 -0.97 26.97 -51.86 -1.40 -2.37 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 2.73 5.66 -51.93 -0.29 2.43 16 30 H 0.07 1.72 7.52 -51.93 -0.39 1.33 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.17 3.60 6.48 -52.49 -0.34 3.26 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -27.62 323.61 -7.51 -35.13 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.46 Total: 2.41 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.06 Total: 2.27 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.36 Total: -31.27 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.29 Total: -22.83 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -2.90 Total: -4.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.62 -7.51 -35.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318956019.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.003 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds