Wall clock time and date at job start Tue Mar 31 2020 11:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99661 * 2 1 4 4 C 1.53001 * 109.46715 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47434 * 64.99790 * 4 3 2 6 6 C 1.36885 * 119.99931 * 264.50440 * 5 4 3 7 7 H 1.07993 * 120.00038 * 141.11079 * 6 5 4 8 8 C 1.39044 * 119.99840 * 321.10800 * 6 5 4 9 9 N 1.31367 * 119.99937 * 339.72714 * 8 6 5 10 10 Si 1.86799 * 119.99859 * 159.73073 * 8 6 5 11 11 H 1.48499 * 109.47370 * 59.99695 * 10 8 6 12 12 H 1.48501 * 109.47214 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46965 * 299.99749 * 10 8 6 14 14 C 1.34773 * 119.99979 * 84.50099 * 5 4 3 15 15 O 1.21600 * 120.00058 * 5.25294 * 14 5 4 16 16 C 1.47659 * 119.99913 * 185.25962 * 14 5 4 17 17 C 1.39688 * 120.15222 * 315.81801 * 16 14 5 18 18 C 1.37990 * 119.84259 * 179.77260 * 17 16 14 19 19 Cl 1.73594 * 119.92014 * 180.23317 * 18 17 16 20 20 C 1.38551 * 120.16346 * 0.50879 * 18 17 16 21 21 C 1.38272 * 120.31238 * 359.74796 * 20 18 17 22 22 C 1.38133 * 120.15305 * 359.97438 * 21 20 18 23 23 Cl 1.73602 * 120.08132 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47054 * 300.00301 * 1 2 3 25 25 H 1.08998 * 109.46824 * 59.99831 * 1 2 3 26 26 H 1.08994 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47221 * 60.00189 * 3 2 1 28 28 H 1.08996 * 109.47148 * 299.99341 * 3 2 1 29 29 H 1.09004 * 109.47288 * 304.99479 * 4 3 2 30 30 H 1.08997 * 109.46972 * 185.00052 * 4 3 2 31 31 H 0.97005 * 119.99773 * 179.97438 * 9 8 6 32 32 H 1.07998 * 120.07539 * 0.02562 * 17 16 14 33 33 H 1.07992 * 119.84542 * 179.72338 * 20 18 17 34 34 H 1.07999 * 119.92046 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2051 -0.7841 -1.3048 7 1 3.9179 -1.3473 -2.1803 8 6 4.8080 -1.4287 -0.2304 9 7 5.5079 -0.7385 0.6410 10 14 4.6228 -3.2763 -0.0263 11 1 5.1821 -3.9645 -1.2174 12 1 5.3543 -3.7158 1.1890 13 1 3.1840 -3.6171 0.1123 14 6 4.1548 1.3214 -2.3532 15 8 4.0441 2.5304 -2.2842 16 6 4.4853 0.6828 -3.6429 17 6 5.4416 -0.3340 -3.6976 18 6 5.7422 -0.9297 -4.9055 19 17 6.9258 -2.1976 -4.9749 20 6 5.1056 -0.5144 -6.0640 21 6 4.1619 0.4951 -6.0182 22 6 3.8469 1.0965 -4.8152 23 17 2.6621 2.3642 -4.7601 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8515 0.5683 0.8410 30 1 3.9785 2.1765 0.0889 31 1 5.9282 -1.1882 1.3908 32 1 5.9416 -0.6559 -2.7961 33 1 5.3480 -0.9811 -7.0072 34 1 3.6699 0.8141 -6.9252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318956019.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:36 Heat of formation + Delta-G solvation = -71.272514 kcal Electronic energy + Delta-G solvation = -22633.031294 eV Core-core repulsion = 19003.797997 eV Total energy + Delta-G solvation = -3629.233297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.16684 -39.56115 -38.46609 -37.67072 -37.08919 -36.60739 -33.55723 -32.71385 -31.43267 -30.54964 -27.30225 -26.76509 -25.07001 -23.81757 -23.09682 -21.14092 -19.62184 -18.05350 -17.58618 -17.27241 -17.07126 -16.73384 -16.56066 -16.10883 -15.94947 -15.53320 -15.19941 -14.85186 -14.58187 -14.36486 -13.69619 -13.43489 -13.31822 -13.17529 -13.09206 -12.88497 -12.68294 -12.55226 -12.48805 -12.14312 -11.94576 -11.89607 -11.86560 -11.78393 -10.99917 -10.56121 -10.40558 -10.00490 -9.59893 -9.42114 -8.29240 -5.98544 -0.19775 0.11339 1.00610 1.23196 1.43990 1.49639 1.56175 1.95532 2.32275 2.54143 2.84439 2.98765 3.19527 3.78079 3.89696 4.12877 4.21960 4.25474 4.35648 4.49256 4.51878 4.58676 4.60292 4.75424 4.81725 4.86246 4.97991 5.12492 5.20468 5.32133 5.48645 5.59264 5.96829 6.39003 6.41328 7.13622 7.53277 7.96025 8.74438 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.007637 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.729027 B = 3665.511644 C = 5562.834312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.117 3.883 5 N -0.424 5.424 6 C -0.331 4.331 7 H 0.085 0.915 8 C 0.020 3.980 9 N -0.886 5.886 10 Si 0.960 3.040 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.495 3.505 15 O -0.611 6.611 16 C -0.100 4.100 17 C -0.056 4.056 18 C -0.050 4.050 19 Cl -0.060 7.060 20 C -0.075 4.075 21 C -0.102 4.102 22 C -0.014 4.014 23 Cl -0.058 7.058 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.272 0.728 32 H 0.139 0.861 33 H 0.181 0.819 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -2.283 -9.736 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.014 4.014 4 C -0.007 4.007 5 N -0.140 5.140 6 C -0.459 4.459 7 H 0.102 0.898 8 C -0.184 4.184 9 N -0.523 5.523 10 Si 0.785 3.215 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.285 3.715 15 O -0.499 6.499 16 C -0.104 4.104 17 C -0.075 4.075 18 C -0.076 4.076 19 Cl -0.031 7.031 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.042 4.042 23 Cl -0.029 7.029 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.198 0.802 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.816 -1.902 -9.455 10.372 hybrid contribution -0.186 -0.431 0.789 0.918 sum -4.002 -2.333 -8.666 9.827 Atomic orbital electron populations 1.22877 0.80655 1.03287 1.00242 1.88063 1.20445 1.27745 1.95314 1.22817 0.94336 0.84664 0.99550 1.21383 0.91420 0.98016 0.89848 1.43345 1.55398 1.07574 1.07683 1.19306 1.39039 0.82281 1.05264 0.89758 1.25870 0.93332 1.03055 0.96142 1.69981 1.28805 1.38557 1.14913 0.85479 0.78583 0.79208 0.78270 1.18471 1.20768 1.19802 1.18492 0.81340 0.86160 0.85550 1.90622 1.58170 1.14465 1.86593 1.19778 0.98963 0.98158 0.93482 1.21414 0.95525 0.92622 0.97964 1.20987 0.96638 0.95062 0.94956 1.98357 1.56120 1.49914 1.98667 1.21436 0.94165 0.95718 0.98015 1.21230 0.98456 0.95975 0.96352 1.21277 0.94701 0.93671 0.94581 1.98358 1.55505 1.50203 1.98802 0.92862 0.94376 0.88885 0.91325 0.95083 0.88750 0.92028 0.91803 0.84328 0.80168 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.55 10.44 -148.98 -1.56 -18.11 16 3 C 0.06 2.63 6.24 71.98 0.45 3.08 16 4 C 0.12 5.62 5.32 86.38 0.46 6.08 16 5 N -0.42 -21.38 2.47 -639.01 -1.58 -22.96 16 6 C -0.33 -16.58 6.37 84.10 0.54 -16.05 16 7 H 0.08 4.20 6.54 -2.91 -0.02 4.19 16 8 C 0.02 0.99 4.91 84.96 0.42 1.41 16 9 N -0.89 -46.19 11.57 21.68 0.25 -45.94 16 10 Si 0.96 40.09 29.60 68.60 2.03 42.12 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 C 0.50 24.57 6.83 86.73 0.59 25.16 16 15 O -0.61 -32.33 15.18 -4.03 -0.06 -32.39 16 16 C -0.10 -4.24 5.21 -20.07 -0.10 -4.34 16 17 C -0.06 -2.19 7.59 22.56 0.17 -2.02 16 18 C -0.05 -1.54 6.31 22.29 0.14 -1.40 16 19 Cl -0.06 -1.68 28.95 -2.72 -0.08 -1.76 16 20 C -0.07 -1.80 9.82 22.35 0.22 -1.58 16 21 C -0.10 -2.63 9.82 22.25 0.22 -2.41 16 22 C -0.01 -0.51 6.34 22.61 0.14 -0.36 16 23 Cl -0.06 -2.06 26.97 -2.72 -0.07 -2.13 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 4.84 5.66 -2.38 -0.01 4.83 16 30 H 0.06 3.02 7.52 -2.39 -0.02 3.00 16 31 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 32 H 0.14 6.21 6.48 -2.91 -0.02 6.19 16 33 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -61.99 323.61 4.56 -57.43 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.14 Total: 14.13 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.49 Total: 9.59 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.33 Total: -68.90 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -1.62 Total: -50.50 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 17 Polarization: -3.73 SS G_CDS: -0.15 Total: -3.89 kcal Total: -61.99 4.56 -57.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318956019.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.840 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds