Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48507 * 109.46975 * 239.99699 * 3 2 1 5 5 H 1.48493 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46885 * 120.00120 * 3 2 1 7 7 C 1.37874 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99944 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.46992 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53838 * 68.37799 * 10 9 7 12 12 O 1.42096 * 110.54333 * 291.62820 * 10 9 7 13 13 N 1.65602 * 104.44815 * 180.02562 * 10 9 7 14 14 C 1.47148 * 120.98114 * 90.00074 * 13 10 9 15 15 C 1.53300 * 108.41473 * 129.42466 * 14 13 10 16 16 O 1.43041 * 109.17495 * 52.28729 * 15 14 13 17 17 C 1.42961 * 114.18862 * 297.43685 * 16 15 14 18 18 H 1.09003 * 109.51314 * 302.66166 * 17 16 15 19 19 C 1.50703 * 109.51343 * 182.51189 * 17 16 15 20 20 C 1.33384 * 125.20125 * 144.97205 * 19 17 16 21 21 C 1.38433 * 114.92039 * 179.85935 * 20 19 17 22 22 C 1.33388 * 114.91619 * 0.42855 * 21 20 19 23 23 S 1.75885 * 125.20107 * 325.27621 * 19 17 16 24 24 C 1.47156 * 120.98236 * 269.97777 * 13 10 9 25 25 H 0.97005 * 120.00385 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 59.99988 * 9 7 2 27 27 H 1.08996 * 109.46832 * 300.00342 * 9 7 2 28 28 H 1.09002 * 109.68336 * 249.16811 * 14 13 10 29 29 H 1.08999 * 109.68144 * 9.68481 * 14 13 10 30 30 H 1.08998 * 109.51580 * 172.24632 * 15 14 13 31 31 H 1.08997 * 109.51046 * 292.39879 * 15 14 13 32 32 H 1.07996 * 122.54643 * 0.02562 * 20 19 17 33 33 H 1.07995 * 122.54111 * 180.20190 * 21 20 19 34 34 H 1.08007 * 125.20205 * 179.75445 * 22 21 20 35 35 H 1.08998 * 109.67987 * 350.28816 * 24 13 10 36 36 H 1.09005 * 109.67921 * 110.83137 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 16 2.4299 -3.8779 0.0014 11 8 3.1275 -3.9376 1.2379 12 8 3.1257 -3.9388 -1.2360 13 7 1.4795 -5.2341 0.0020 14 6 1.0443 -5.8546 -1.2592 15 6 1.3669 -7.3521 -1.1988 16 8 0.8195 -7.9025 0.0026 17 6 1.3682 -7.3519 1.2023 18 1 2.4491 -7.4920 1.2062 19 6 0.7654 -8.0461 2.3965 20 6 1.4070 -8.3145 3.5347 21 6 0.6462 -8.9587 4.4952 22 6 -0.6106 -9.2213 4.1335 23 16 -0.8894 -8.6331 2.4995 24 6 1.0458 -5.8546 1.2639 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 -0.0293 -5.7152 -1.3857 29 1 1.5747 -5.3983 -2.0950 30 1 0.9302 -7.8538 -2.0623 31 1 2.4479 -7.4921 -1.2038 32 1 2.4408 -8.0470 3.6959 33 1 1.0413 -9.2313 5.4625 34 1 -1.3446 -9.7194 4.7496 35 1 1.5774 -5.3985 2.0990 36 1 -0.0278 -5.7151 1.3916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331321211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -77.477641 kcal Electronic energy + Delta-G solvation = -22449.294342 eV Core-core repulsion = 18959.712478 eV Total energy + Delta-G solvation = -3489.581864 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.50271 -37.66704 -36.32214 -35.15580 -34.59684 -33.39023 -32.44411 -29.11219 -29.04229 -26.59149 -24.73426 -23.54638 -23.02176 -21.29339 -19.42417 -18.48229 -17.67412 -17.23906 -16.52150 -16.30265 -15.76669 -15.63790 -15.40927 -14.94194 -14.52774 -14.34247 -14.18650 -13.85849 -13.05059 -12.85863 -12.54224 -12.39517 -12.31400 -12.16568 -11.97213 -11.63586 -11.53754 -11.48545 -11.26272 -10.98981 -10.91989 -10.87381 -10.67832 -10.49932 -10.16394 -9.89801 -9.42790 -8.92690 -8.74809 -8.51270 -8.39761 -6.37041 -4.48832 0.85266 1.17657 1.55669 1.97566 2.61917 3.20911 3.23015 3.26929 3.31095 3.57132 4.20312 4.62225 4.70007 4.79001 4.85310 4.94392 4.96356 5.08708 5.12873 5.23924 5.37015 5.43193 5.47408 5.49384 5.57383 5.83474 5.95360 5.98396 6.12933 6.21544 6.34805 6.51011 6.73043 6.84443 7.02656 7.38581 7.70313 8.53091 9.19390 10.74453 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020305 B = 0.003700 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.614651 B = 7566.371690 C = 8072.388725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.069 0.931 9 C -0.414 4.414 10 S 2.578 3.422 11 O -0.976 6.976 12 O -0.976 6.976 13 N -1.012 6.012 14 C 0.083 3.917 15 C 0.054 3.946 16 O -0.375 6.375 17 C 0.153 3.847 18 H 0.082 0.918 19 C -0.171 4.171 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.225 4.225 23 S 0.139 5.861 24 C 0.098 3.902 25 H 0.269 0.731 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.107 0.893 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 -17.537 3.824 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.550 4.550 10 S 2.681 3.319 11 O -0.966 6.966 12 O -0.967 6.967 13 N -0.847 5.847 14 C -0.043 4.043 15 C -0.024 4.024 16 O -0.294 6.294 17 C 0.092 3.908 18 H 0.100 0.900 19 C -0.289 4.289 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.361 4.361 23 S 0.404 5.596 24 C -0.029 4.029 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.125 0.875 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.127 -17.621 2.840 18.120 hybrid contribution 1.038 1.248 1.007 1.910 sum -2.089 -16.373 3.848 16.949 Atomic orbital electron populations 1.69942 1.06270 1.27871 1.47262 1.24925 0.95015 0.99609 0.93353 0.86430 0.79666 0.81384 0.79501 1.19383 1.20644 1.19375 1.20288 0.92700 0.88758 1.56001 0.91322 1.27725 1.10323 1.10235 1.06764 1.06153 0.76808 0.75232 0.73732 1.93462 1.71450 1.86191 1.45531 1.93460 1.71501 1.86205 1.45487 1.58198 1.70880 1.45290 1.10361 1.22066 1.01294 0.94104 0.86855 1.22962 0.98886 0.93386 0.87162 1.87930 1.65160 1.63072 1.13225 1.20615 0.96875 0.91395 0.81953 0.90006 1.24143 0.98018 1.07716 0.99014 1.20097 1.01761 1.01549 0.92757 1.20106 0.93623 1.01854 1.00918 1.25771 1.01142 1.09039 1.00165 1.84417 1.10002 1.54857 1.10368 1.22004 1.01461 0.92286 0.87114 0.92091 0.89726 0.89732 0.90694 0.87637 0.87524 0.92405 0.83972 0.84274 0.81991 0.87495 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.29 55.43 0.74 -23.91 16 2 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.78 9.13 -34.44 -0.31 -15.10 16 8 H 0.07 1.85 7.71 -52.49 -0.40 1.44 16 9 C -0.41 -9.95 5.93 36.01 0.21 -9.73 16 10 S 2.58 54.38 5.39 -107.50 -0.58 53.80 16 11 O -0.98 -22.50 16.62 -57.54 -0.96 -23.46 16 12 O -0.98 -22.38 16.61 -57.54 -0.96 -23.33 16 13 N -1.01 -16.90 3.27 -113.06 -0.37 -17.27 16 14 C 0.08 1.15 6.67 -3.53 -0.02 1.13 16 15 C 0.05 0.65 6.99 37.31 0.26 0.91 16 16 O -0.37 -5.07 10.10 -35.23 -0.36 -5.42 16 17 C 0.15 2.08 3.21 -27.73 -0.09 2.00 16 18 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.17 -2.14 5.52 -36.00 -0.20 -2.34 16 20 C -0.13 -1.47 10.05 -41.21 -0.41 -1.89 16 21 C -0.13 -1.32 10.18 -41.20 -0.42 -1.74 16 22 C -0.23 -2.17 11.23 29.04 0.33 -1.84 16 23 S 0.14 1.57 23.03 -107.50 -2.48 -0.90 16 24 C 0.10 1.48 5.94 -3.54 -0.02 1.46 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 27 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.11 1.49 6.88 -51.93 -0.36 1.13 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.11 1.67 6.88 -51.93 -0.36 1.31 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -32.94 330.42 -10.26 -43.20 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.48 Total: 1.67 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -0.78 Total: -25.12 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.37 Total: -41.18 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -2.27 Total: -52.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 55.96 SS G_CDS: -3.06 Total: 52.90 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.94 -10.26 -43.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331321211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.276 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds