Wall clock time and date at job start Tue Mar 31 2020 12:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48507 * 109.46975 * 239.99699 * 3 2 1 5 5 H 1.48493 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46885 * 120.00120 * 3 2 1 7 7 C 1.37874 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99944 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.46992 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53838 * 68.37799 * 10 9 7 12 12 O 1.42096 * 110.54333 * 291.62820 * 10 9 7 13 13 N 1.65602 * 104.44815 * 180.02562 * 10 9 7 14 14 C 1.47148 * 120.98114 * 90.00074 * 13 10 9 15 15 C 1.53300 * 108.41473 * 129.42466 * 14 13 10 16 16 O 1.43041 * 109.17495 * 52.28729 * 15 14 13 17 17 C 1.42961 * 114.18862 * 297.43685 * 16 15 14 18 18 H 1.09003 * 109.51314 * 302.66166 * 17 16 15 19 19 C 1.50703 * 109.51343 * 182.51189 * 17 16 15 20 20 C 1.33384 * 125.20125 * 144.97205 * 19 17 16 21 21 C 1.38433 * 114.92039 * 179.85935 * 20 19 17 22 22 C 1.33388 * 114.91619 * 0.42855 * 21 20 19 23 23 S 1.75885 * 125.20107 * 325.27621 * 19 17 16 24 24 C 1.47156 * 120.98236 * 269.97777 * 13 10 9 25 25 H 0.97005 * 120.00385 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 59.99988 * 9 7 2 27 27 H 1.08996 * 109.46832 * 300.00342 * 9 7 2 28 28 H 1.09002 * 109.68336 * 249.16811 * 14 13 10 29 29 H 1.08999 * 109.68144 * 9.68481 * 14 13 10 30 30 H 1.08998 * 109.51580 * 172.24632 * 15 14 13 31 31 H 1.08997 * 109.51046 * 292.39879 * 15 14 13 32 32 H 1.07996 * 122.54643 * 0.02562 * 20 19 17 33 33 H 1.07995 * 122.54111 * 180.20190 * 21 20 19 34 34 H 1.08007 * 125.20205 * 179.75445 * 22 21 20 35 35 H 1.08998 * 109.67987 * 350.28816 * 24 13 10 36 36 H 1.09005 * 109.67921 * 110.83137 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 16 2.4299 -3.8779 0.0014 11 8 3.1275 -3.9376 1.2379 12 8 3.1257 -3.9388 -1.2360 13 7 1.4795 -5.2341 0.0020 14 6 1.0443 -5.8546 -1.2592 15 6 1.3669 -7.3521 -1.1988 16 8 0.8195 -7.9025 0.0026 17 6 1.3682 -7.3519 1.2023 18 1 2.4491 -7.4920 1.2062 19 6 0.7654 -8.0461 2.3965 20 6 1.4070 -8.3145 3.5347 21 6 0.6462 -8.9587 4.4952 22 6 -0.6106 -9.2213 4.1335 23 16 -0.8894 -8.6331 2.4995 24 6 1.0458 -5.8546 1.2639 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8919 28 1 -0.0293 -5.7152 -1.3857 29 1 1.5747 -5.3983 -2.0950 30 1 0.9302 -7.8538 -2.0623 31 1 2.4479 -7.4921 -1.2038 32 1 2.4408 -8.0470 3.6959 33 1 1.0413 -9.2313 5.4625 34 1 -1.3446 -9.7194 4.7496 35 1 1.5774 -5.3985 2.0990 36 1 -0.0278 -5.7151 1.3916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331321211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:58 Heat of formation + Delta-G solvation = -100.505888 kcal Electronic energy + Delta-G solvation = -22450.292921 eV Core-core repulsion = 18959.712478 eV Total energy + Delta-G solvation = -3490.580444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57257 -38.51536 -38.11843 -36.94430 -35.86552 -35.43537 -33.44335 -31.07063 -30.04894 -27.72273 -25.75716 -25.53531 -23.97290 -22.44016 -20.33201 -19.83618 -19.28099 -18.60469 -18.15628 -17.58225 -17.35149 -16.93416 -16.40956 -16.30780 -16.00534 -15.82825 -15.25076 -15.17313 -14.47091 -14.11012 -13.95006 -13.66481 -13.55122 -13.48383 -13.23420 -13.16126 -13.10950 -13.06136 -12.74024 -12.69808 -12.54482 -12.43709 -11.87804 -11.79239 -11.50567 -11.37726 -11.13828 -10.80320 -10.01313 -9.51113 -9.35093 -8.43567 -6.63100 -0.57205 0.04606 0.71789 1.16390 1.36829 1.39936 1.48267 1.73606 1.85181 2.29516 2.59661 2.89722 2.95362 3.26157 3.58543 3.75362 3.78522 4.04648 4.18267 4.25509 4.28388 4.36523 4.58382 4.61196 4.65780 4.70796 4.72346 4.75625 4.90397 4.98515 5.20412 5.29296 5.37262 5.47676 5.56180 5.68577 6.01305 6.47255 7.09227 8.68572 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020305 B = 0.003700 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.614651 B = 7566.371690 C = 8072.388725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.430 4.430 10 S 2.616 3.384 11 O -0.996 6.996 12 O -0.993 6.993 13 N -1.007 6.007 14 C 0.072 3.928 15 C 0.055 3.945 16 O -0.378 6.378 17 C 0.158 3.842 18 H 0.081 0.919 19 C -0.198 4.198 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.213 4.213 23 S 0.120 5.880 24 C 0.093 3.907 25 H 0.274 0.726 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.058 0.942 32 H 0.150 0.850 33 H 0.165 0.835 34 H 0.190 0.810 35 H 0.098 0.902 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -18.683 4.334 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.610 4.610 8 H 0.083 0.917 9 C -0.564 4.564 10 S 2.717 3.283 11 O -0.986 6.986 12 O -0.984 6.984 13 N -0.845 5.845 14 C -0.052 4.052 15 C -0.023 4.023 16 O -0.297 6.297 17 C 0.097 3.903 18 H 0.098 0.902 19 C -0.316 4.316 20 C -0.161 4.161 21 C -0.173 4.173 22 C -0.348 4.348 23 S 0.384 5.616 24 C -0.033 4.033 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.182 0.818 34 H 0.207 0.793 35 H 0.116 0.884 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.174 -18.751 3.344 19.310 hybrid contribution 0.994 1.481 0.882 1.990 sum -2.179 -17.270 4.226 17.913 Atomic orbital electron populations 1.70022 1.07556 1.28996 1.47779 1.25836 0.95950 1.03145 0.92719 0.85529 0.78763 0.77361 0.79888 1.18595 1.19313 1.18671 1.20732 0.93028 0.90755 1.56471 0.91724 1.27816 1.11119 1.11482 1.05981 1.04730 0.76020 0.74875 0.72706 1.93426 1.72055 1.86633 1.46512 1.93427 1.71999 1.86629 1.46309 1.57831 1.70636 1.43730 1.12296 1.22402 1.02201 0.95377 0.85267 1.23133 0.99363 0.91958 0.87841 1.87942 1.65319 1.62984 1.13479 1.20495 0.96967 0.90079 0.82733 0.90171 1.24105 0.98875 1.09453 0.99165 1.20397 1.02345 1.00740 0.92607 1.20387 0.93616 1.01645 1.01698 1.26130 1.01640 1.07979 0.99098 1.84431 1.09605 1.55357 1.12172 1.22189 1.01712 0.93534 0.85885 0.91658 0.90280 0.90559 0.89193 0.87833 0.84092 0.92322 0.83202 0.81756 0.79275 0.88368 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 13.29 21.45 0.28 -51.33 16 2 C 0.03 1.49 5.46 84.65 0.46 1.96 16 3 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.57 -32.03 9.13 25.60 0.23 -31.80 16 8 H 0.06 3.56 7.71 -2.91 -0.02 3.53 16 9 C -0.43 -21.27 5.93 71.24 0.42 -20.84 16 10 S 2.62 111.75 5.39 -56.49 -0.30 111.45 16 11 O -1.00 -46.45 16.62 -127.65 -2.12 -48.58 16 12 O -0.99 -45.72 16.61 -127.65 -2.12 -47.84 16 13 N -1.01 -33.44 3.27 -511.62 -1.67 -35.12 16 14 C 0.07 1.94 6.67 86.36 0.58 2.52 16 15 C 0.05 1.21 6.99 72.08 0.50 1.72 16 16 O -0.38 -9.66 10.10 -148.98 -1.51 -11.17 16 17 C 0.16 4.20 3.21 29.94 0.10 4.30 16 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.20 -4.76 5.52 24.59 0.14 -4.62 16 20 C -0.13 -2.72 10.05 21.22 0.21 -2.51 16 21 C -0.14 -2.48 10.18 21.22 0.22 -2.26 16 22 C -0.21 -3.56 11.23 66.72 0.75 -2.81 16 23 S 0.12 2.56 23.03 -56.49 -1.30 1.26 16 24 C 0.09 2.80 5.94 86.35 0.51 3.31 16 25 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 26 H 0.08 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.08 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.10 2.84 6.88 -2.39 -0.02 2.82 16 30 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.10 3.11 6.88 -2.39 -0.02 3.09 16 36 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -70.26 330.42 -1.51 -71.77 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.09 Total: 16.16 kcal Atomic # 6 Polarization: -55.18 SS G_CDS: 4.12 Total: -51.06 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.39 Total: -86.45 kcal Atomic # 8 Polarization: -101.84 SS G_CDS: -5.75 Total: -107.59 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 114.31 SS G_CDS: -1.61 Total: 112.71 kcal Total: -70.26 -1.51 -71.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331321211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.740 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds