Wall clock time and date at job start Tue Mar 31 2020 12:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47289 * 180.02562 * 9 7 2 11 11 O 1.42096 * 110.54386 * 291.62664 * 10 9 7 12 12 O 1.42107 * 110.54441 * 68.37414 * 10 9 7 13 13 N 1.65604 * 104.45080 * 179.97438 * 10 9 7 14 14 C 1.47155 * 120.98188 * 269.71725 * 13 10 9 15 15 C 1.52880 * 108.60616 * 230.50073 * 14 13 10 16 16 O 1.42966 * 109.29694 * 307.93395 * 15 14 13 17 17 C 1.42966 * 114.16363 * 62.45307 * 16 15 14 18 18 H 1.08999 * 109.51501 * 57.34287 * 17 16 15 19 19 C 1.50703 * 109.55142 * 177.46899 * 17 16 15 20 20 C 1.33389 * 125.19883 * 219.48941 * 19 17 16 21 21 C 1.38431 * 114.91491 * 179.86083 * 20 19 17 22 22 C 1.33387 * 114.92110 * 0.42605 * 21 20 19 23 23 S 1.75879 * 109.59428 * 359.77711 * 22 21 20 24 24 C 1.47149 * 120.98206 * 89.99933 * 13 10 9 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 27 27 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 28 28 H 1.09003 * 109.67952 * 350.28149 * 14 13 10 29 29 H 1.08997 * 109.67879 * 110.83234 * 14 13 10 30 30 H 1.08997 * 109.57854 * 187.92502 * 15 14 13 31 31 H 1.08992 * 109.40533 * 67.84503 * 15 14 13 32 32 H 1.07994 * 122.54504 * 0.02562 * 20 19 17 33 33 H 1.07996 * 122.53556 * 180.20282 * 21 20 19 34 34 H 1.08004 * 125.20056 * 179.78747 * 22 21 20 35 35 H 1.08997 * 109.68356 * 249.17137 * 24 13 10 36 36 H 1.09007 * 109.67925 * 9.71595 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 8 3.1264 -3.9384 -1.2375 12 8 3.1264 -3.9384 1.2365 13 7 1.4792 -5.2342 0.0002 14 6 1.0499 -5.8577 1.2621 15 6 1.3677 -7.3519 1.2007 16 8 0.8189 -7.9026 0.0009 17 6 1.3664 -7.3522 -1.1996 18 1 2.4474 -7.4924 -1.2045 19 6 0.7634 -8.0464 -2.3935 20 6 1.4261 -8.3896 -3.4991 21 6 0.6617 -9.0223 -4.4644 22 6 -0.6235 -9.1847 -4.1463 23 16 -0.9233 -8.5211 -2.5454 24 6 1.0440 -5.8548 -1.2610 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 0.8898 27 1 0.6239 -2.5567 -0.8903 28 1 1.5848 -5.4037 2.0964 29 1 -0.0230 -5.7185 1.3939 30 1 0.9316 -7.8538 2.0644 31 1 2.4484 -7.4927 1.2050 32 1 2.4796 -8.1915 -3.6301 33 1 1.0739 -9.3556 -5.4053 34 1 -1.3663 -9.6525 -4.7756 35 1 -0.0296 -5.7153 -1.3876 36 1 1.5749 -5.3989 -2.0969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331321212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:02 Heat of formation + Delta-G solvation = -77.477940 kcal Electronic energy + Delta-G solvation = -22449.589347 eV Core-core repulsion = 18960.007470 eV Total energy + Delta-G solvation = -3489.581877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51459 -37.67336 -36.32159 -35.15566 -34.59581 -33.39018 -32.46021 -29.12671 -29.04828 -26.61123 -24.71695 -23.54636 -23.02434 -21.29245 -19.44373 -18.46835 -17.67498 -17.24030 -16.52517 -16.32014 -15.77388 -15.63483 -15.41319 -14.93201 -14.53764 -14.34126 -14.18498 -13.85985 -13.04776 -12.87091 -12.54213 -12.40780 -12.31478 -12.16423 -11.96902 -11.63341 -11.53380 -11.48506 -11.26245 -10.99082 -10.91961 -10.86752 -10.67908 -10.50747 -10.15768 -9.89784 -9.42531 -8.93480 -8.74760 -8.51665 -8.40253 -6.37060 -4.48789 0.84677 1.17616 1.55318 1.96907 2.61155 3.20937 3.23043 3.26934 3.31069 3.58785 4.20345 4.61656 4.69996 4.78739 4.86133 4.94487 4.95921 5.08492 5.12815 5.23333 5.37104 5.43154 5.47182 5.49312 5.57418 5.83116 5.95030 5.98320 6.12594 6.21344 6.34541 6.51031 6.73071 6.84443 7.03105 7.38617 7.70374 8.53116 9.19393 10.74455 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003711 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.383173 B = 7543.623371 C = 8052.316803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.069 0.931 9 C -0.414 4.414 10 S 2.578 3.422 11 O -0.976 6.976 12 O -0.976 6.976 13 N -1.012 6.012 14 C 0.082 3.918 15 C 0.054 3.946 16 O -0.374 6.374 17 C 0.153 3.847 18 H 0.082 0.918 19 C -0.171 4.171 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.224 4.224 23 S 0.138 5.862 24 C 0.097 3.903 25 H 0.269 0.731 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.075 0.925 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 -17.521 -3.842 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.087 0.913 9 C -0.550 4.550 10 S 2.681 3.319 11 O -0.966 6.966 12 O -0.967 6.967 13 N -0.847 5.847 14 C -0.043 4.043 15 C -0.024 4.024 16 O -0.293 6.293 17 C 0.091 3.909 18 H 0.100 0.900 19 C -0.289 4.289 20 C -0.161 4.161 21 C -0.165 4.165 22 C -0.360 4.360 23 S 0.403 5.597 24 C -0.029 4.029 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.093 0.907 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.169 -17.483 -2.911 18.004 hybrid contribution 1.074 1.123 -0.954 1.824 sum -2.095 -16.359 -3.866 16.940 Atomic orbital electron populations 1.69945 1.06270 1.27866 1.47257 1.24927 0.95018 0.99610 0.93353 0.86427 0.79664 0.81376 0.79500 1.20645 1.19381 1.19379 1.20287 0.92700 0.88759 1.56006 0.91323 1.27720 1.10315 1.10217 1.06769 1.06159 0.76804 0.75241 0.73734 1.93462 1.71479 1.86186 1.45506 1.93461 1.71463 1.86211 1.45519 1.58194 1.70995 1.45182 1.10340 1.21985 1.01377 0.94115 0.86862 1.22871 0.98894 0.93412 0.87249 1.87930 1.65142 1.63052 1.13186 1.20618 0.96893 0.91377 0.81972 0.90012 1.24132 0.97522 1.07887 0.99353 1.20105 1.01671 1.01143 0.93145 1.20106 0.93265 1.02226 1.00950 1.25764 1.00641 1.08888 1.00714 1.84411 1.07510 1.55613 1.12205 1.22014 1.01426 0.92330 0.87156 0.92094 0.89723 0.89725 0.87617 0.90719 0.87511 0.92456 0.83999 0.84269 0.81974 0.90655 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.29 55.43 0.74 -23.91 16 2 C 0.08 2.12 5.46 -17.82 -0.10 2.03 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.79 9.13 -34.44 -0.31 -15.10 16 8 H 0.07 1.85 7.71 -52.49 -0.40 1.44 16 9 C -0.41 -9.94 5.93 36.00 0.21 -9.73 16 10 S 2.58 54.43 5.39 -107.50 -0.58 53.85 16 11 O -0.98 -22.53 16.62 -57.54 -0.96 -23.49 16 12 O -0.98 -22.39 16.61 -57.54 -0.96 -23.34 16 13 N -1.01 -16.93 3.28 -113.30 -0.37 -17.30 16 14 C 0.08 1.15 6.64 -3.75 -0.02 1.13 16 15 C 0.05 0.65 6.97 37.10 0.26 0.91 16 16 O -0.37 -5.07 10.19 -35.23 -0.36 -5.43 16 17 C 0.15 2.08 3.21 -27.73 -0.09 2.00 16 18 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 19 C -0.17 -2.14 5.48 -36.00 -0.20 -2.34 16 20 C -0.13 -1.46 10.04 -41.21 -0.41 -1.87 16 21 C -0.13 -1.33 10.18 -41.21 -0.42 -1.74 16 22 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 23 S 0.14 1.57 23.12 -107.50 -2.49 -0.92 16 24 C 0.10 1.48 5.95 -3.54 -0.02 1.46 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 27 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 28 H 0.11 1.49 6.87 -51.93 -0.36 1.13 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.11 1.68 6.88 -51.92 -0.36 1.32 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -32.97 330.50 -10.27 -43.24 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.48 Total: 1.66 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -0.78 Total: -25.11 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.36 Total: -41.21 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -2.27 Total: -52.26 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 56.00 SS G_CDS: -3.07 Total: 52.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.97 -10.27 -43.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331321212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.238 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds