Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47289 * 180.02562 * 9 7 2 11 11 O 1.42096 * 110.54386 * 291.62664 * 10 9 7 12 12 O 1.42107 * 110.54441 * 68.37414 * 10 9 7 13 13 N 1.65604 * 104.45080 * 179.97438 * 10 9 7 14 14 C 1.47155 * 120.98188 * 269.71725 * 13 10 9 15 15 C 1.52880 * 108.60616 * 230.50073 * 14 13 10 16 16 O 1.42966 * 109.29694 * 307.93395 * 15 14 13 17 17 C 1.42966 * 114.16363 * 62.45307 * 16 15 14 18 18 H 1.08999 * 109.51501 * 57.34287 * 17 16 15 19 19 C 1.50703 * 109.55142 * 177.46899 * 17 16 15 20 20 C 1.33389 * 125.19883 * 219.48941 * 19 17 16 21 21 C 1.38431 * 114.91491 * 179.86083 * 20 19 17 22 22 C 1.33387 * 114.92110 * 0.42605 * 21 20 19 23 23 S 1.75879 * 109.59428 * 359.77711 * 22 21 20 24 24 C 1.47149 * 120.98206 * 89.99933 * 13 10 9 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 27 27 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 28 28 H 1.09003 * 109.67952 * 350.28149 * 14 13 10 29 29 H 1.08997 * 109.67879 * 110.83234 * 14 13 10 30 30 H 1.08997 * 109.57854 * 187.92502 * 15 14 13 31 31 H 1.08992 * 109.40533 * 67.84503 * 15 14 13 32 32 H 1.07994 * 122.54504 * 0.02562 * 20 19 17 33 33 H 1.07996 * 122.53556 * 180.20282 * 21 20 19 34 34 H 1.08004 * 125.20056 * 179.78747 * 22 21 20 35 35 H 1.08997 * 109.68356 * 249.17137 * 24 13 10 36 36 H 1.09007 * 109.67925 * 9.71595 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4296 -3.8780 -0.0005 11 8 3.1264 -3.9384 -1.2375 12 8 3.1264 -3.9384 1.2365 13 7 1.4792 -5.2342 0.0002 14 6 1.0499 -5.8577 1.2621 15 6 1.3677 -7.3519 1.2007 16 8 0.8189 -7.9026 0.0009 17 6 1.3664 -7.3522 -1.1996 18 1 2.4474 -7.4924 -1.2045 19 6 0.7634 -8.0464 -2.3935 20 6 1.4261 -8.3896 -3.4991 21 6 0.6617 -9.0223 -4.4644 22 6 -0.6235 -9.1847 -4.1463 23 16 -0.9233 -8.5211 -2.5454 24 6 1.0440 -5.8548 -1.2610 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 0.8898 27 1 0.6239 -2.5567 -0.8903 28 1 1.5848 -5.4037 2.0964 29 1 -0.0230 -5.7185 1.3939 30 1 0.9316 -7.8538 2.0644 31 1 2.4484 -7.4927 1.2050 32 1 2.4796 -8.1915 -3.6301 33 1 1.0739 -9.3556 -5.4053 34 1 -1.3663 -9.6525 -4.7756 35 1 -0.0296 -5.7153 -1.3876 36 1 1.5749 -5.3989 -2.0969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331321212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = -100.548661 kcal Electronic energy + Delta-G solvation = -22450.589768 eV Core-core repulsion = 18960.007470 eV Total energy + Delta-G solvation = -3490.582298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58613 -38.51978 -38.11953 -36.94555 -35.86622 -35.43584 -33.46108 -31.07194 -30.06910 -27.74279 -25.74152 -25.53506 -23.97554 -22.44085 -20.35919 -19.81591 -19.28196 -18.60346 -18.16084 -17.59918 -17.35560 -16.93270 -16.42855 -16.30231 -15.99533 -15.83688 -15.25379 -15.17483 -14.47133 -14.11003 -13.94736 -13.67524 -13.55564 -13.48427 -13.23829 -13.16947 -13.11037 -13.05777 -12.73987 -12.69207 -12.54477 -12.43817 -11.87735 -11.78881 -11.51670 -11.37480 -11.13626 -10.80308 -10.01481 -9.52125 -9.35559 -8.43623 -6.63110 -0.57376 0.04046 0.71513 1.15787 1.36845 1.39957 1.48286 1.73118 1.84895 2.29525 2.61207 2.89690 2.95236 3.25929 3.58047 3.75460 3.78514 4.04349 4.17951 4.25077 4.28337 4.36729 4.58055 4.61036 4.65547 4.70453 4.72231 4.75520 4.90259 4.98341 5.20245 5.29265 5.37002 5.47509 5.56083 5.68571 6.01606 6.47223 7.09182 8.68543 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.003711 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.383173 B = 7543.623371 C = 8052.316803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.430 4.430 10 S 2.616 3.384 11 O -0.996 6.996 12 O -0.993 6.993 13 N -1.007 6.007 14 C 0.072 3.928 15 C 0.054 3.946 16 O -0.378 6.378 17 C 0.158 3.842 18 H 0.081 0.919 19 C -0.198 4.198 20 C -0.128 4.128 21 C -0.144 4.144 22 C -0.212 4.212 23 S 0.118 5.882 24 C 0.092 3.908 25 H 0.274 0.726 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.058 0.942 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.190 0.810 35 H 0.082 0.918 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -18.683 -4.356 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.610 4.610 8 H 0.083 0.917 9 C -0.564 4.564 10 S 2.717 3.283 11 O -0.986 6.986 12 O -0.984 6.984 13 N -0.845 5.845 14 C -0.053 4.053 15 C -0.023 4.023 16 O -0.297 6.297 17 C 0.097 3.903 18 H 0.099 0.901 19 C -0.316 4.316 20 C -0.160 4.160 21 C -0.174 4.174 22 C -0.347 4.347 23 S 0.382 5.618 24 C -0.034 4.034 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.207 0.793 35 H 0.100 0.900 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.184 -18.629 -3.420 19.206 hybrid contribution 1.022 1.361 -0.828 1.893 sum -2.163 -17.267 -4.248 17.913 Atomic orbital electron populations 1.70025 1.07558 1.28992 1.47770 1.25839 0.95953 1.03146 0.92716 0.85526 0.78761 0.77352 0.79888 1.19311 1.18584 1.18683 1.20731 0.93028 0.90753 1.56482 0.91725 1.27811 1.11109 1.11462 1.05988 1.04735 0.76014 0.74885 0.72709 1.93426 1.72086 1.86629 1.46494 1.93429 1.71960 1.86635 1.46334 1.57825 1.70742 1.43643 1.12274 1.22320 1.02287 0.95380 0.85273 1.23042 0.99378 0.91991 0.87928 1.87942 1.65312 1.62970 1.13449 1.20500 0.97000 0.90050 0.82749 0.90145 1.24093 0.98301 1.09659 0.99558 1.20413 1.02346 1.00257 0.92940 1.20392 0.93262 1.02039 1.01660 1.26123 1.01231 1.07737 0.99648 1.84432 1.07148 1.56251 1.14006 1.22199 1.01676 0.93589 0.85923 0.91658 0.90273 0.90552 0.87805 0.89218 0.84083 0.92361 0.83140 0.81705 0.79261 0.89954 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 13.29 21.45 0.28 -51.34 16 2 C 0.03 1.49 5.46 84.66 0.46 1.95 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.57 -32.05 9.13 25.60 0.23 -31.82 16 8 H 0.06 3.56 7.71 -2.91 -0.02 3.53 16 9 C -0.43 -21.26 5.93 71.23 0.42 -20.84 16 10 S 2.62 111.87 5.39 -56.49 -0.30 111.57 16 11 O -1.00 -46.52 16.62 -127.65 -2.12 -48.65 16 12 O -0.99 -45.74 16.61 -127.65 -2.12 -47.86 16 13 N -1.01 -33.51 3.28 -512.36 -1.68 -35.19 16 14 C 0.07 1.94 6.64 86.21 0.57 2.52 16 15 C 0.05 1.21 6.97 71.94 0.50 1.71 16 16 O -0.38 -9.68 10.19 -148.98 -1.52 -11.20 16 17 C 0.16 4.20 3.21 29.95 0.10 4.30 16 18 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 19 C -0.20 -4.77 5.48 24.59 0.13 -4.63 16 20 C -0.13 -2.68 10.04 21.22 0.21 -2.47 16 21 C -0.14 -2.47 10.18 21.22 0.22 -2.25 16 22 C -0.21 -3.55 11.23 66.72 0.75 -2.80 16 23 S 0.12 2.51 23.12 -56.49 -1.31 1.21 16 24 C 0.09 2.78 5.95 86.35 0.51 3.30 16 25 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 26 H 0.08 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.08 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.10 2.85 6.87 -2.39 -0.02 2.83 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 3.12 6.88 -2.38 -0.02 3.10 16 Total: -1.00 -70.33 330.50 -1.54 -71.87 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.09 Total: 16.15 kcal Atomic # 6 Polarization: -55.15 SS G_CDS: 4.12 Total: -51.03 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.39 Total: -86.53 kcal Atomic # 8 Polarization: -101.95 SS G_CDS: -5.76 Total: -107.71 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 114.38 SS G_CDS: -1.61 Total: 112.77 kcal Total: -70.33 -1.54 -71.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331321212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.679 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds