Wall clock time and date at job start Tue Mar 31 2020 12:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20664 * 2 1 4 4 C 1.38419 * 114.92337 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.54162 * 179.97438 * 4 3 2 6 6 C 1.33390 * 114.91901 * 0.02562 * 4 3 2 7 7 S 1.76198 * 125.20173 * 179.97438 * 6 4 3 8 8 O 1.42097 * 106.40315 * 336.45744 * 7 6 4 9 9 O 1.42097 * 106.40299 * 203.53693 * 7 6 4 10 10 N 1.65598 * 107.21988 * 89.99793 * 7 6 4 11 11 C 1.47579 * 134.49275 * 89.99785 * 10 7 6 12 12 C 1.53953 * 86.11613 * 155.35927 * 11 10 7 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49297 * 270.00225 * 10 7 6 23 23 S 1.75883 * 109.59425 * 0.23934 * 6 4 3 24 24 H 1.08996 * 109.46719 * 90.00020 * 1 2 3 25 25 H 1.08994 * 109.47282 * 210.00422 * 1 2 3 26 26 H 1.09005 * 109.47035 * 330.00427 * 1 2 3 27 27 H 1.08005 * 122.53811 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47509 * 270.02959 * 5 4 3 29 29 H 1.09012 * 109.47065 * 30.02843 * 5 4 3 30 30 H 1.09009 * 109.47325 * 150.02019 * 5 4 3 31 31 H 1.08998 * 113.77112 * 41.06368 * 11 10 7 32 32 H 1.09000 * 113.87384 * 269.67062 * 11 10 7 33 33 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 34 34 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 35 35 H 1.09003 * 113.77322 * 90.33595 * 22 10 7 36 36 H 1.09009 * 113.76717 * 318.93604 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9480 -0.0012 6 6 3.9751 -0.4478 -0.0016 7 16 5.6248 -1.0668 -0.0031 8 8 6.4391 -0.0374 -0.5476 9 8 5.5611 -2.3775 -0.5482 10 7 6.0849 -1.2399 1.5782 11 6 6.0024 -2.3336 2.5656 12 6 7.2013 -1.6592 3.2570 13 8 8.4697 -2.1367 2.8044 14 6 7.0909 -1.6182 4.7594 15 1 6.2570 -2.0952 5.2528 16 6 8.0544 -0.9715 5.5041 17 7 8.0147 -1.0228 6.8176 18 14 9.4163 -0.0227 4.6472 19 1 10.5685 -0.9259 4.3990 20 1 8.9135 0.5053 3.3534 21 1 9.8496 1.1072 5.5079 22 6 6.7421 -0.3623 2.5662 23 16 2.5209 -1.4372 -0.0088 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.8670 2.0895 0.0004 28 1 4.9086 2.2147 -1.0290 29 1 4.2570 2.8195 0.5131 30 1 5.5626 1.6095 0.5120 31 1 6.2295 -3.3164 2.1526 32 1 5.0892 -2.3229 3.1605 33 1 9.2235 -1.6390 3.1499 34 1 7.2683 -1.4528 7.2638 35 1 6.0456 0.2292 3.1604 36 1 7.5597 0.2288 2.1535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331406127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:41 Heat of formation + Delta-G solvation = -48.342102 kcal Electronic energy + Delta-G solvation = -22866.940142 eV Core-core repulsion = 19378.621690 eV Total energy + Delta-G solvation = -3488.318452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.92088 -38.64713 -36.85475 -35.56475 -34.40416 -33.03404 -32.59551 -28.49393 -27.99368 -27.20701 -25.71302 -24.20356 -21.97094 -20.27725 -19.75026 -18.22373 -18.00186 -17.61849 -17.02724 -15.94083 -15.89932 -15.32835 -14.71001 -14.55857 -14.36836 -13.67327 -13.58974 -13.44366 -13.28581 -13.25698 -13.08274 -12.55151 -12.32569 -12.18835 -12.06813 -11.93436 -11.76047 -11.67179 -11.59927 -11.17459 -10.98366 -10.84324 -10.73300 -10.32269 -9.78271 -9.44818 -9.16442 -9.04448 -8.69586 -8.48347 -8.29482 -6.69428 -4.45772 0.34751 0.70467 1.38622 1.70717 2.31473 3.14387 3.18289 3.29430 3.34680 4.04108 4.19622 4.39683 4.53999 4.77752 4.86454 5.05602 5.06905 5.12386 5.13322 5.28366 5.50930 5.60472 5.65504 5.69622 5.77436 5.88759 6.07861 6.10994 6.15519 6.28439 6.33781 6.46684 6.56842 7.17731 7.52447 8.07717 8.50248 8.62146 9.28962 10.66017 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004674 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.604438 B = 5989.465970 C = 6192.963029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.146 4.146 3 C -0.167 4.167 4 C 0.042 3.958 5 C -0.123 4.123 6 C -0.799 4.799 7 S 2.720 3.280 8 O -0.952 6.952 9 O -0.959 6.959 10 N -1.022 6.022 11 C 0.144 3.856 12 C 0.205 3.795 13 O -0.554 6.554 14 C -0.608 4.608 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.892 5.892 18 Si 1.026 2.974 19 H -0.274 1.274 20 H -0.264 1.264 21 H -0.280 1.280 22 C 0.086 3.914 23 S 0.201 5.799 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.355 0.645 34 H 0.273 0.727 35 H 0.089 0.911 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 5.120 -11.749 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.265 4.265 3 C -0.197 4.197 4 C 0.026 3.974 5 C -0.181 4.181 6 C -0.998 4.998 7 S 2.809 3.191 8 O -0.942 6.942 9 O -0.949 6.949 10 N -0.863 5.863 11 C 0.020 3.980 12 C 0.161 3.839 13 O -0.363 6.363 14 C -0.647 4.647 15 H 0.090 0.910 16 C -0.172 4.172 17 N -0.525 5.525 18 Si 0.854 3.146 19 H -0.201 1.201 20 H -0.190 1.190 21 H -0.206 1.206 22 C -0.040 4.040 23 S 0.468 5.532 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.163 0.837 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.206 0.794 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.447 3.795 -12.776 17.569 hybrid contribution -1.718 1.351 0.321 2.209 sum -13.165 5.146 -12.455 18.840 Atomic orbital electron populations 1.20459 0.87273 1.03771 1.03219 1.25066 1.00538 0.97238 1.03673 1.20163 0.92278 0.99711 1.07586 1.18677 0.95194 0.92788 0.90718 1.21007 0.97188 0.95698 1.04228 1.36046 1.27815 1.06504 1.29398 1.01218 0.72205 0.73185 0.72481 1.93541 1.65267 1.58942 1.76488 1.93544 1.86955 1.37833 1.76609 1.60265 1.72687 1.26350 1.27027 1.22920 0.98624 0.90367 0.86117 1.20504 0.81662 0.88743 0.92979 1.86441 1.15379 1.60161 1.74366 1.22314 1.13479 1.39591 0.89266 0.90967 1.25794 0.99996 0.95532 0.95872 1.70779 1.31614 1.41770 1.08318 0.84383 0.76348 0.77726 0.76137 1.20111 1.18953 1.20584 1.24348 0.95570 0.97078 0.86985 1.84080 0.92558 1.06159 1.70397 0.90102 0.90758 0.90024 0.83666 0.89240 0.90576 0.89576 0.90206 0.89300 0.79447 0.91640 0.89281 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.38 36.01 0.37 -0.28 16 2 C -0.15 -1.64 6.51 -36.00 -0.23 -1.88 16 3 C -0.17 -1.96 9.85 -41.21 -0.41 -2.37 16 4 C 0.04 0.60 5.80 -106.25 -0.62 -0.02 16 5 C -0.12 -1.58 8.98 36.00 0.32 -1.25 16 6 C -0.80 -12.77 6.57 29.04 0.19 -12.58 16 7 S 2.72 50.97 6.08 -107.50 -0.65 50.32 16 8 O -0.95 -18.73 15.20 -57.17 -0.87 -19.60 16 9 O -0.96 -19.92 17.88 -57.17 -1.02 -20.95 16 10 N -1.02 -19.96 4.11 -118.69 -0.49 -20.45 16 11 C 0.14 2.90 8.36 -2.97 -0.02 2.88 16 12 C 0.20 4.64 1.06 -90.84 -0.10 4.55 16 13 O -0.55 -12.93 13.42 -35.23 -0.47 -13.41 16 14 C -0.61 -15.47 9.04 -34.44 -0.31 -15.79 16 15 H 0.07 1.94 8.04 -52.49 -0.42 1.52 16 16 C 0.04 0.93 5.47 -17.82 -0.10 0.83 16 17 N -0.89 -25.16 13.70 55.43 0.76 -24.40 16 18 Si 1.03 22.14 24.79 -169.99 -4.21 17.93 16 19 H -0.27 -5.62 6.95 56.52 0.39 -5.23 16 20 H -0.26 -5.12 4.86 56.52 0.27 -4.84 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.09 1.73 7.14 -2.97 -0.02 1.71 16 23 S 0.20 2.78 23.20 -107.50 -2.49 0.28 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 0.77 8.13 -51.92 -0.42 0.34 16 30 H 0.09 1.26 6.22 -51.92 -0.32 0.93 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 33 H 0.35 7.69 4.23 45.56 0.19 7.89 16 34 H 0.27 7.65 8.72 -40.82 -0.36 7.30 16 35 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 36 H 0.08 1.53 6.54 -51.92 -0.34 1.19 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -31.38 323.27 -9.48 -40.86 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -3.98 Total: 8.75 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -0.92 Total: -24.20 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.27 Total: -44.85 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -2.36 Total: -53.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.21 Total: 17.93 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -3.15 Total: 50.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.38 -9.48 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331406127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.485 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds