Wall clock time and date at job start Tue Mar 31 2020 12:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20664 * 2 1 4 4 C 1.38419 * 114.92337 * 180.02562 * 3 2 1 5 5 C 1.50694 * 122.54162 * 179.97438 * 4 3 2 6 6 C 1.33390 * 114.91901 * 0.02562 * 4 3 2 7 7 S 1.76198 * 125.20173 * 179.97438 * 6 4 3 8 8 O 1.42097 * 106.40315 * 336.45744 * 7 6 4 9 9 O 1.42097 * 106.40299 * 203.53693 * 7 6 4 10 10 N 1.65598 * 107.21988 * 89.99793 * 7 6 4 11 11 C 1.47579 * 134.49275 * 89.99785 * 10 7 6 12 12 C 1.53953 * 86.11613 * 155.35927 * 11 10 7 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49297 * 270.00225 * 10 7 6 23 23 S 1.75883 * 109.59425 * 0.23934 * 6 4 3 24 24 H 1.08996 * 109.46719 * 90.00020 * 1 2 3 25 25 H 1.08994 * 109.47282 * 210.00422 * 1 2 3 26 26 H 1.09005 * 109.47035 * 330.00427 * 1 2 3 27 27 H 1.08005 * 122.53811 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47509 * 270.02959 * 5 4 3 29 29 H 1.09012 * 109.47065 * 30.02843 * 5 4 3 30 30 H 1.09009 * 109.47325 * 150.02019 * 5 4 3 31 31 H 1.08998 * 113.77112 * 41.06368 * 11 10 7 32 32 H 1.09000 * 113.87384 * 269.67062 * 11 10 7 33 33 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 34 34 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 35 35 H 1.09003 * 113.77322 * 90.33595 * 22 10 7 36 36 H 1.09009 * 113.76717 * 318.93604 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2761 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9480 -0.0012 6 6 3.9751 -0.4478 -0.0016 7 16 5.6248 -1.0668 -0.0031 8 8 6.4391 -0.0374 -0.5476 9 8 5.5611 -2.3775 -0.5482 10 7 6.0849 -1.2399 1.5782 11 6 6.0024 -2.3336 2.5656 12 6 7.2013 -1.6592 3.2570 13 8 8.4697 -2.1367 2.8044 14 6 7.0909 -1.6182 4.7594 15 1 6.2570 -2.0952 5.2528 16 6 8.0544 -0.9715 5.5041 17 7 8.0147 -1.0228 6.8176 18 14 9.4163 -0.0227 4.6472 19 1 10.5685 -0.9259 4.3990 20 1 8.9135 0.5053 3.3534 21 1 9.8496 1.1072 5.5079 22 6 6.7421 -0.3623 2.5662 23 16 2.5209 -1.4372 -0.0088 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.8670 2.0895 0.0004 28 1 4.9086 2.2147 -1.0290 29 1 4.2570 2.8195 0.5131 30 1 5.5626 1.6095 0.5120 31 1 6.2295 -3.3164 2.1526 32 1 5.0892 -2.3229 3.1605 33 1 9.2235 -1.6390 3.1499 34 1 7.2683 -1.4528 7.2638 35 1 6.0456 0.2292 3.1604 36 1 7.5597 0.2288 2.1535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331406127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:40 Heat of formation + Delta-G solvation = -73.094648 kcal Electronic energy + Delta-G solvation = -22868.013493 eV Core-core repulsion = 19378.621690 eV Total energy + Delta-G solvation = -3489.391803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = -0.37 seconds Orbital eigenvalues (eV) -40.61031 -39.65031 -38.34196 -37.08864 -36.17608 -34.61038 -33.88258 -29.75654 -29.39715 -28.15623 -27.32958 -26.04609 -22.86281 -21.64290 -21.30592 -19.99628 -19.58956 -18.76258 -18.52669 -17.69097 -17.08461 -16.86322 -16.29140 -15.58218 -15.41922 -15.25426 -15.20570 -14.82699 -14.35528 -14.26227 -14.16012 -14.00687 -13.94538 -13.45632 -13.40587 -13.32590 -13.10828 -12.88110 -12.79257 -12.74918 -12.44533 -12.12176 -11.99280 -11.86019 -11.62313 -11.18852 -10.96758 -10.46829 -10.21180 -9.93322 -9.51651 -8.77044 -6.54778 -0.86922 -0.52926 0.33560 0.72107 1.34175 1.42215 1.49201 1.63142 1.85376 2.40767 2.62484 2.87922 3.10557 3.29012 3.58529 3.90829 4.00556 4.04473 4.10760 4.37433 4.44496 4.47473 4.56250 4.64555 4.66985 4.69951 4.85791 4.89194 4.92654 4.95452 5.11054 5.14892 5.38564 5.50794 5.65288 5.95127 6.43889 6.79498 7.28560 8.57525 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004674 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.604438 B = 5989.465970 C = 6192.963029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C -0.178 4.178 4 C 0.052 3.948 5 C -0.130 4.130 6 C -0.831 4.831 7 S 2.734 3.266 8 O -0.966 6.966 9 O -0.987 6.987 10 N -1.027 6.027 11 C 0.146 3.854 12 C 0.187 3.813 13 O -0.563 6.563 14 C -0.607 4.607 15 H 0.044 0.956 16 C -0.009 4.009 17 N -0.926 5.926 18 Si 1.054 2.946 19 H -0.257 1.257 20 H -0.231 1.231 21 H -0.282 1.282 22 C 0.093 3.907 23 S 0.169 5.831 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.181 0.819 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.102 0.898 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.238 7.180 -13.437 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.238 4.238 3 C -0.208 4.208 4 C 0.035 3.965 5 C -0.188 4.188 6 C -1.035 5.035 7 S 2.828 3.172 8 O -0.957 6.957 9 O -0.978 6.978 10 N -0.867 5.867 11 C 0.021 3.979 12 C 0.144 3.856 13 O -0.374 6.374 14 C -0.646 4.646 15 H 0.062 0.938 16 C -0.210 4.210 17 N -0.561 5.561 18 Si 0.876 3.124 19 H -0.183 1.183 20 H -0.154 1.154 21 H -0.208 1.208 22 C -0.032 4.032 23 S 0.435 5.565 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.199 0.801 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.213 0.787 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.117 5.823 -14.466 20.377 hybrid contribution -1.388 0.708 0.806 1.754 sum -14.505 6.530 -13.660 20.967 Atomic orbital electron populations 1.20692 0.84193 1.05268 1.04870 1.25602 1.02212 0.95389 1.00646 1.20486 0.91057 1.01507 1.07700 1.19082 0.96793 0.92221 0.88447 1.21134 0.96344 0.96456 1.04893 1.35423 1.26460 1.07761 1.33821 1.00326 0.72883 0.72438 0.71600 1.93516 1.66729 1.58941 1.76515 1.93504 1.87808 1.39570 1.76927 1.60097 1.73748 1.25849 1.27009 1.22899 0.98196 0.90547 0.86294 1.20622 0.82238 0.91182 0.91545 1.86426 1.15863 1.60846 1.74255 1.22426 1.12400 1.38533 0.91253 0.93760 1.27100 1.02305 0.95957 0.95605 1.70909 1.31809 1.43772 1.09629 0.84080 0.74676 0.76990 0.76701 1.18276 1.15436 1.20829 1.24171 0.96151 0.95900 0.86966 1.84175 0.92791 1.08072 1.71435 0.88159 0.90021 0.87719 0.80131 0.88461 0.87414 0.91534 0.90266 0.87905 0.78750 0.93139 0.88030 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.38 71.24 0.74 -0.21 16 2 C -0.12 -2.27 6.51 24.59 0.16 -2.11 16 3 C -0.18 -3.49 9.85 21.22 0.21 -3.28 16 4 C 0.05 1.33 5.80 -20.92 -0.12 1.21 16 5 C -0.13 -2.99 8.98 71.23 0.64 -2.35 16 6 C -0.83 -25.55 6.57 66.72 0.44 -25.11 16 7 S 2.73 101.29 6.08 -56.49 -0.34 100.95 16 8 O -0.97 -37.34 15.20 -128.00 -1.95 -39.28 16 9 O -0.99 -41.35 17.88 -128.00 -2.29 -43.64 16 10 N -1.03 -39.47 4.11 -533.26 -2.19 -41.66 16 11 C 0.15 5.85 8.36 86.48 0.72 6.57 16 12 C 0.19 8.43 1.06 -10.88 -0.01 8.42 16 13 O -0.56 -25.89 13.42 -148.98 -2.00 -27.89 16 14 C -0.61 -31.43 9.04 25.60 0.23 -31.20 16 15 H 0.04 2.47 8.04 -2.91 -0.02 2.45 16 16 C -0.01 -0.48 5.47 84.66 0.46 -0.01 16 17 N -0.93 -53.63 13.70 21.45 0.29 -53.34 16 18 Si 1.05 43.65 24.79 68.60 1.70 45.35 16 19 H -0.26 -9.91 6.95 99.48 0.69 -9.22 16 20 H -0.23 -8.22 4.86 99.48 0.48 -7.74 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.09 3.65 7.14 86.48 0.62 4.27 16 23 S 0.17 4.44 23.20 -56.49 -1.31 3.13 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.11 1.75 8.13 -2.38 -0.02 1.73 16 30 H 0.07 1.82 6.22 -2.38 -0.01 1.80 16 31 H 0.08 3.14 8.14 -2.39 -0.02 3.13 16 32 H 0.10 3.77 8.09 -2.39 -0.02 3.75 16 33 H 0.36 15.15 4.23 -74.05 -0.31 14.83 16 34 H 0.26 15.17 8.72 -92.70 -0.81 14.36 16 35 H 0.10 3.68 8.09 -2.39 -0.02 3.66 16 36 H 0.09 3.21 6.54 -2.38 -0.02 3.19 16 Total: -1.00 -69.38 323.27 -3.47 -72.85 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.53 Total: 27.33 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 4.09 Total: -43.80 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -1.90 Total: -95.00 kcal Atomic # 8 Polarization: -104.58 SS G_CDS: -6.23 Total: -110.81 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.70 Total: 45.35 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -1.65 Total: 104.08 kcal Total: -69.38 -3.47 -72.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331406127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.246 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.37 seconds