Wall clock time and date at job start Tue Mar 31 2020 11:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 O 1.42897 * 109.47442 * 240.00240 * 2 1 3 5 5 C 1.35919 * 117.00306 * 85.13175 * 4 2 1 6 6 C 1.38748 * 120.03363 * 354.69685 * 5 4 2 7 7 C 1.38140 * 119.98150 * 179.97438 * 6 5 4 8 8 C 1.38360 * 120.05275 * 359.97438 * 7 6 5 9 9 Cl 1.73600 * 119.95928 * 179.97438 * 8 7 6 10 10 C 1.38462 * 120.07306 * 359.97438 * 8 7 6 11 11 Cl 1.73599 * 119.98762 * 180.02562 * 10 8 7 12 12 C 1.38264 * 120.01855 * 359.75316 * 10 8 7 13 13 C 1.50700 * 109.47364 * 119.99820 * 2 1 3 14 14 O 1.21294 * 119.99959 * 115.00137 * 13 2 1 15 15 N 1.34779 * 120.00117 * 295.00606 * 13 2 1 16 16 C 1.46500 * 119.99746 * 359.97438 * 15 13 2 17 17 C 1.37097 * 119.99893 * 179.97438 * 15 13 2 18 18 H 1.07998 * 119.99825 * 20.66614 * 17 15 13 19 19 C 1.38952 * 119.99843 * 200.66359 * 17 15 13 20 20 N 1.31410 * 119.99908 * 14.21237 * 19 17 15 21 21 Si 1.86798 * 119.99911 * 194.20942 * 19 17 15 22 22 H 1.48496 * 109.47227 * 90.00477 * 21 19 17 23 23 H 1.48507 * 109.46795 * 210.00139 * 21 19 17 24 24 H 1.48498 * 109.46981 * 329.99770 * 21 19 17 25 25 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46969 * 60.00177 * 1 2 3 27 27 H 1.08997 * 109.47572 * 299.99902 * 1 2 3 28 28 H 1.08006 * 120.01184 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.97116 * 180.02562 * 7 6 5 30 30 H 1.08004 * 120.03118 * 180.24917 * 12 10 8 31 31 H 1.09004 * 109.46892 * 93.10553 * 16 15 13 32 32 H 1.09004 * 109.46783 * 213.09597 * 16 15 13 33 33 H 1.08994 * 109.47429 * 333.10073 * 16 15 13 34 34 H 0.96997 * 120.00092 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1152 0.0634 -2.3036 6 6 1.6678 1.3766 -2.3254 7 6 1.7795 2.1248 -3.4812 8 6 2.3376 1.5660 -4.6172 9 17 2.4761 2.5082 -6.0686 10 6 2.7858 0.2560 -4.5976 11 17 3.4863 -0.4427 -6.0240 12 6 2.6806 -0.4938 -3.4408 13 6 2.0324 -0.7104 1.2305 14 8 2.6531 -1.7467 1.1215 15 7 1.7919 -0.1942 2.4520 16 6 1.0425 1.0578 2.5836 17 6 2.2485 -0.8407 3.5714 18 1 3.0590 -1.5500 3.4924 19 6 1.6684 -0.5833 4.8076 20 7 0.5199 0.0516 4.8750 21 14 2.5213 -1.1399 6.3735 22 1 3.4268 -0.0649 6.8529 23 1 1.5034 -1.4306 7.4150 24 1 3.3115 -2.3665 6.0976 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.2324 1.8138 -1.4389 29 1 1.4315 3.1471 -3.4979 30 1 3.0338 -1.5143 -3.4241 31 1 -0.0154 0.8351 2.7230 32 1 1.4131 1.6143 3.4445 33 1 1.1722 1.6554 1.6814 34 1 0.1148 0.2310 5.7378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337519662.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:15 Heat of formation + Delta-G solvation = -61.496547 kcal Electronic energy + Delta-G solvation = -21621.338494 eV Core-core repulsion = 17992.529115 eV Total energy + Delta-G solvation = -3628.809379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74942 -40.34858 -38.86870 -37.57959 -37.19295 -36.68393 -34.15119 -32.81060 -31.77928 -30.62360 -28.16690 -26.96300 -25.21055 -24.21549 -23.31873 -20.94949 -19.65263 -18.96441 -17.99529 -17.71438 -17.27734 -16.75292 -16.53341 -16.10710 -15.94747 -15.67238 -15.02593 -14.93451 -14.80658 -14.29766 -13.89746 -13.68469 -13.52728 -13.14548 -13.05174 -13.03193 -12.92736 -12.68131 -12.55301 -12.35977 -12.28169 -12.14055 -12.04832 -11.84628 -11.63413 -11.03096 -10.36143 -10.08499 -9.76538 -9.28388 -8.37687 -6.01467 -0.15137 0.02461 0.74098 1.08845 1.35820 1.42070 1.52727 1.85590 1.90580 2.32180 2.34659 3.03763 3.06987 3.52535 3.61775 3.79969 3.86209 3.95794 4.00769 4.12829 4.45918 4.57666 4.64376 4.66551 4.73067 4.92256 5.00441 5.07772 5.14749 5.24245 5.40833 5.43159 5.98578 6.21081 6.45352 7.11591 7.37019 7.92649 8.63581 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.002808 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.721606 B = 9970.134920 C =10483.411347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 H 0.117 0.883 4 O -0.306 6.306 5 C 0.138 3.862 6 C -0.192 4.192 7 C -0.044 4.044 8 C -0.079 4.079 9 Cl -0.048 7.048 10 C 0.004 3.996 11 Cl -0.042 7.042 12 C -0.149 4.149 13 C 0.431 3.569 14 O -0.626 6.626 15 N -0.448 5.448 16 C 0.111 3.889 17 C -0.349 4.349 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.887 5.887 21 Si 0.988 3.012 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.279 1.279 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.168 0.832 29 H 0.178 0.822 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 9.976 -16.589 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.027 3.973 3 H 0.135 0.865 4 O -0.218 6.218 5 C 0.091 3.909 6 C -0.211 4.211 7 C -0.062 4.062 8 C -0.107 4.107 9 Cl -0.019 7.019 10 C -0.023 4.023 11 Cl -0.013 7.013 12 C -0.169 4.169 13 C 0.220 3.780 14 O -0.513 6.513 15 N -0.167 5.167 16 C -0.031 4.031 17 C -0.477 4.477 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.525 5.525 21 Si 0.811 3.189 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.204 1.204 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.185 0.815 29 H 0.196 0.804 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.322 9.382 -16.686 19.188 hybrid contribution 0.463 -0.630 0.760 1.090 sum -0.860 8.752 -15.926 18.193 Atomic orbital electron populations 1.22420 0.91038 1.03785 1.05613 1.22196 0.96729 0.96564 0.81790 0.86524 1.86233 1.80769 1.38259 1.16564 1.19202 0.94177 0.91194 0.86315 1.21673 1.05399 0.92800 1.01189 1.21133 0.94870 1.01422 0.88796 1.20744 1.07448 0.91389 0.91120 1.98375 1.96807 1.71396 1.35284 1.20391 1.00277 0.92455 0.89216 1.98387 1.82193 1.84052 1.36682 1.20224 1.04662 1.02074 0.89910 1.20513 0.85693 0.86594 0.85216 1.90516 1.46728 1.27300 1.86799 1.43712 1.48012 1.21168 1.03836 1.21745 0.96589 0.84299 1.00459 1.19605 1.16968 1.25430 0.85718 0.91240 1.25994 0.95440 0.96713 1.01569 1.70035 1.14890 1.40414 1.27140 0.85021 0.78125 0.78661 0.77078 1.18881 1.19642 1.20450 0.93011 0.87942 0.88637 0.81466 0.80422 0.83812 0.92118 0.92532 0.90757 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 8.88 71.98 0.64 -4.17 16 2 C 0.09 2.96 1.82 29.85 0.05 3.02 16 3 H 0.12 3.19 5.28 -2.38 -0.01 3.17 16 4 O -0.31 -11.07 9.34 -73.65 -0.69 -11.75 16 5 C 0.14 3.84 6.60 22.50 0.15 3.98 16 6 C -0.19 -3.91 8.25 22.37 0.18 -3.73 16 7 C -0.04 -0.75 9.82 22.28 0.22 -0.53 16 8 C -0.08 -1.61 6.32 22.35 0.14 -1.47 16 9 Cl -0.05 -0.87 27.95 -2.72 -0.08 -0.94 16 10 C 0.00 0.10 6.32 22.33 0.14 0.24 16 11 Cl -0.04 -0.92 27.95 -2.72 -0.08 -0.99 16 12 C -0.15 -3.97 9.77 22.38 0.22 -3.75 16 13 C 0.43 20.98 7.05 87.66 0.62 21.60 16 14 O -0.63 -37.01 16.18 15.92 0.26 -36.75 16 15 N -0.45 -22.14 3.02 -658.88 -1.99 -24.13 16 16 C 0.11 4.37 7.17 127.77 0.92 5.29 16 17 C -0.35 -19.44 9.31 84.04 0.78 -18.66 16 18 H 0.07 4.22 7.39 -2.91 -0.02 4.19 16 19 C 0.01 0.30 5.07 84.93 0.43 0.73 16 20 N -0.89 -44.17 10.65 21.66 0.23 -43.94 16 21 Si 0.99 41.10 29.58 68.60 2.03 43.13 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.10 2.06 6.94 -2.39 -0.02 2.04 16 27 H 0.10 2.60 5.18 -2.39 -0.01 2.59 16 28 H 0.17 2.66 5.44 -2.91 -0.02 2.65 16 29 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 31 H 0.06 2.44 6.60 -2.38 -0.02 2.42 16 32 H 0.06 2.38 7.08 -2.39 -0.02 2.36 16 33 H 0.07 2.14 5.86 -2.39 -0.01 2.13 16 34 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 Total: -1.00 -68.27 314.70 5.34 -62.93 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.16 Total: 9.88 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 4.49 Total: 2.57 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -1.76 Total: -68.07 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.43 Total: -48.50 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.15 Total: -1.94 kcal Total: -68.27 5.34 -62.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337519662.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.431 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds