Wall clock time and date at job start Tue Mar 31 2020 11:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34779 * 116.99546 * 2 1 4 4 O 1.21521 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.47287 * 119.99737 * 180.02562 * 3 2 1 6 6 C 1.39842 * 120.20641 * 5.10601 * 5 3 2 7 7 C 1.37799 * 119.92723 * 180.25822 * 6 5 3 8 8 Cl 1.73595 * 119.82899 * 179.74278 * 7 6 5 9 9 C 1.38737 * 120.34491 * 359.72777 * 7 6 5 10 10 C 1.38025 * 120.41091 * 359.97438 * 9 7 6 11 11 Cl 1.73600 * 119.96652 * 180.02562 * 10 9 7 12 12 C 1.39059 * 120.06059 * 0.02562 * 10 9 7 13 13 N 1.38955 * 120.16633 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00035 * 276.20979 * 13 12 10 15 15 C 1.52999 * 109.46802 * 185.11497 * 14 13 12 16 16 C 1.50703 * 109.46850 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00214 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99645 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00201 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99846 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46903 * 90.00183 * 20 18 16 22 22 H 1.48493 * 109.47270 * 210.00472 * 20 18 16 23 23 H 1.48502 * 109.47155 * 330.00447 * 20 18 16 24 24 H 1.08999 * 109.47812 * 60.00274 * 1 2 3 25 25 H 1.09009 * 109.46785 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47250 * 299.99793 * 1 2 3 27 27 H 1.07997 * 120.03450 * 0.02562 * 6 5 3 28 28 H 1.07995 * 119.79232 * 180.02562 * 9 7 6 29 29 H 1.00902 * 111.00063 * 40.16467 * 13 12 10 30 30 H 1.08995 * 109.46938 * 305.10806 * 14 13 12 31 31 H 1.08995 * 109.47164 * 65.11224 * 14 13 12 32 32 H 1.09007 * 109.47093 * 299.99659 * 15 14 13 33 33 H 1.08995 * 109.47485 * 59.99923 * 15 14 13 34 34 H 0.96997 * 119.99866 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2009 0.0000 4 8 1.4018 2.2200 -0.0005 5 6 3.5346 1.2781 -0.0006 6 6 4.3002 0.1128 -0.1087 7 6 5.6759 0.1912 -0.1032 8 17 6.6238 -1.2575 -0.2308 9 6 6.3075 1.4219 0.0034 10 6 5.5656 2.5814 0.1046 11 17 6.3678 4.1153 0.2368 12 6 4.1763 2.5221 0.1009 13 7 3.4273 3.6880 0.2032 14 6 3.2699 4.0910 1.6071 15 6 2.3371 5.3011 1.6887 16 6 2.1751 5.7141 3.1289 17 1 2.6866 5.1685 3.9080 18 6 1.3746 6.7894 3.4517 19 7 0.7522 7.4541 2.5029 20 14 1.1732 7.3010 5.2370 21 1 2.2210 8.2928 5.5889 22 1 -0.1680 7.9085 5.4295 23 1 1.3067 6.1085 6.1118 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.8137 -0.8477 -0.1925 28 1 7.3862 1.4730 0.0063 29 1 3.8381 4.4308 -0.3423 30 1 2.8440 3.2650 2.1766 31 1 4.2433 4.3540 2.0209 32 1 2.7630 6.1272 1.1190 33 1 1.3637 5.0381 1.2748 34 1 0.1888 8.2103 2.7302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342835766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:39 Heat of formation + Delta-G solvation = -84.452559 kcal Electronic energy + Delta-G solvation = -21676.010882 eV Core-core repulsion = 18046.206055 eV Total energy + Delta-G solvation = -3629.804826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81275 -40.39227 -38.19764 -37.70444 -37.19432 -36.91849 -35.06284 -32.75582 -32.15484 -29.62592 -28.55587 -26.36000 -25.21848 -23.51885 -22.66391 -21.89615 -19.37775 -18.65523 -18.17425 -18.03179 -17.31791 -16.97880 -16.64119 -16.46026 -16.01977 -15.75914 -15.30857 -14.70581 -14.60973 -14.30368 -14.12779 -13.82772 -13.47016 -13.39241 -13.18000 -12.91662 -12.89288 -12.52556 -12.33088 -12.19304 -12.11033 -12.06906 -11.72281 -11.55550 -11.49826 -11.33981 -10.57688 -10.26156 -10.11383 -9.35957 -8.20508 -6.32542 -0.66986 -0.30288 0.61069 1.08800 1.35997 1.39073 1.41178 1.52119 1.69334 2.27107 2.39918 2.90388 3.12900 3.45045 3.70411 3.77971 3.92260 4.24635 4.27890 4.37257 4.38394 4.40709 4.48808 4.69680 4.73213 4.83947 4.96438 5.08566 5.34041 5.42878 5.59139 5.73534 5.99195 6.18693 6.28381 6.80853 6.83901 7.36307 8.91818 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004168 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.405936 B = 6716.279424 C = 8122.350430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.496 3.504 4 O -0.488 6.488 5 C -0.111 4.111 6 C -0.027 4.027 7 C -0.048 4.048 8 Cl -0.034 7.034 9 C -0.043 4.043 10 C -0.089 4.089 11 Cl -0.043 7.043 12 C 0.170 3.830 13 N -0.643 5.643 14 C 0.107 3.893 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.263 1.263 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.051 0.949 27 H 0.177 0.823 28 H 0.174 0.826 29 H 0.356 0.644 30 H 0.048 0.952 31 H 0.038 0.962 32 H -0.006 1.006 33 H -0.008 1.008 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 -19.868 -7.055 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.339 3.661 4 O -0.374 6.374 5 C -0.115 4.115 6 C -0.046 4.046 7 C -0.076 4.076 8 Cl -0.004 7.004 9 C -0.063 4.063 10 C -0.119 4.119 11 Cl -0.014 7.014 12 C 0.070 3.930 13 N -0.272 5.272 14 C -0.018 4.018 15 C 0.003 3.997 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.192 0.808 29 H 0.179 0.821 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.010 0.990 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.293 -19.679 -7.096 23.314 hybrid contribution 0.268 1.258 0.751 1.489 sum 10.561 -18.421 -6.345 22.161 Atomic orbital electron populations 1.23518 0.74545 1.05779 1.02167 1.86489 1.24898 1.31432 1.84677 1.20936 0.88976 0.81955 0.74191 1.91042 1.66525 1.36513 1.43366 1.18825 0.89792 0.92708 1.10126 1.21519 0.91648 0.98755 0.92649 1.20513 0.91559 0.88623 1.06884 1.98401 1.71343 1.34312 1.96389 1.21265 1.02240 0.88242 0.94504 1.21536 0.91993 0.89097 1.09260 1.98413 1.78625 1.27955 1.96390 1.18828 0.88726 0.91907 0.93543 1.57538 1.51571 1.05218 1.12824 1.21719 0.98228 0.97592 0.84275 1.18820 0.93780 0.91518 0.95592 1.21531 1.28911 1.14262 0.93485 0.92174 1.25962 0.95002 0.96299 1.02269 1.70122 1.31368 1.20912 1.34611 0.85423 0.77626 0.78704 0.79146 1.19470 1.20703 1.18761 0.92180 0.84070 0.93034 0.80566 0.80825 0.82121 0.93364 0.94387 0.98725 0.98998 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.57 113.37 1.20 1.88 16 2 O -0.36 -9.16 9.83 -56.90 -0.56 -9.72 16 3 C 0.50 16.18 7.88 70.20 0.55 16.74 16 4 O -0.49 -20.46 14.66 19.77 0.29 -20.17 16 5 C -0.11 -3.16 5.89 -20.00 -0.12 -3.28 16 6 C -0.03 -0.54 9.38 22.55 0.21 -0.33 16 7 C -0.05 -0.87 6.31 22.29 0.14 -0.73 16 8 Cl -0.03 -0.49 28.94 -2.72 -0.08 -0.57 16 9 C -0.04 -0.82 9.58 22.34 0.21 -0.60 16 10 C -0.09 -2.26 6.30 22.42 0.14 -2.12 16 11 Cl -0.04 -1.12 26.95 -2.72 -0.07 -1.19 16 12 C 0.17 5.31 5.26 38.72 0.20 5.51 16 13 N -0.64 -24.87 4.21 -337.81 -1.42 -26.30 16 14 C 0.11 4.77 5.20 86.30 0.45 5.22 16 15 C 0.04 2.26 5.28 29.85 0.16 2.42 16 16 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 20 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 25 H 0.14 1.68 8.14 -2.38 -0.02 1.67 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.18 2.75 7.62 -2.91 -0.02 2.73 16 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.36 13.28 7.78 -89.69 -0.70 12.58 16 30 H 0.05 2.23 8.11 -2.39 -0.02 2.21 16 31 H 0.04 1.61 7.43 -2.39 -0.02 1.59 16 32 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -71.61 330.71 4.76 -66.85 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.45 Total: 8.26 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 3.85 Total: -6.36 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -1.14 Total: -84.24 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.27 Total: -29.89 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.15 Total: -1.76 kcal Total: -71.61 4.76 -66.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342835766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.603 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds