Wall clock time and date at job start Tue Mar 31 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46670 * 2 1 4 4 O 1.42897 * 109.47106 * 239.99867 * 2 1 3 5 5 C 1.35918 * 117.00013 * 84.83382 * 4 2 1 6 6 C 1.38750 * 120.03653 * 174.59864 * 5 4 2 7 7 C 1.38139 * 119.98254 * 180.02562 * 6 5 4 8 8 C 1.38357 * 120.05572 * 359.74651 * 7 6 5 9 9 Cl 1.73596 * 119.96731 * 180.25594 * 8 7 6 10 10 C 1.38461 * 120.06996 * 0.50694 * 8 7 6 11 11 Cl 1.73606 * 119.99211 * 179.76866 * 10 8 7 12 12 C 1.38277 * 120.02133 * 359.49403 * 10 8 7 13 13 C 1.50702 * 109.47187 * 119.99429 * 2 1 3 14 14 O 1.21278 * 119.99644 * 120.00181 * 13 2 1 15 15 N 1.34776 * 120.00124 * 300.00579 * 13 2 1 16 16 C 1.46497 * 119.99657 * 179.97438 * 15 13 2 17 17 C 1.50704 * 109.46848 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99679 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99932 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00187 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99815 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47684 * 59.99648 * 21 19 17 23 23 H 1.48504 * 109.46873 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47315 * 299.99182 * 21 19 17 25 25 H 1.09004 * 109.46670 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47444 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47375 * 60.00789 * 1 2 3 28 28 H 1.07996 * 120.00884 * 0.04423 * 6 5 4 29 29 H 1.08000 * 119.97317 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.02879 * 180.27519 * 12 10 8 31 31 H 0.96996 * 119.99808 * 0.02562 * 15 13 2 32 32 H 1.08988 * 109.47599 * 299.99896 * 16 15 13 33 33 H 1.09001 * 109.47173 * 59.99881 * 16 15 13 34 34 H 0.97000 * 120.00692 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.1092 0.0618 -2.3051 6 6 2.6692 -0.4972 -3.4449 7 6 2.7736 0.2514 -4.6011 8 6 2.3156 1.5567 -4.6252 9 17 2.4419 2.4933 -6.0814 10 6 1.7611 2.1185 -3.4876 11 17 1.1925 3.7585 -3.5184 12 6 1.6550 1.3720 -2.3286 13 6 2.0323 -0.7103 1.2305 14 8 2.7296 -1.6963 1.1193 15 7 1.7067 -0.2498 2.4546 16 6 2.1946 -0.9407 3.6507 17 6 1.6928 -0.2298 4.8812 18 1 1.0721 0.6485 4.7820 19 6 2.0260 -0.7007 6.1335 20 7 2.7814 -1.7704 6.2542 21 14 1.4034 0.1800 7.6586 22 1 -0.0815 0.1800 7.6588 23 1 1.8981 -0.5202 8.8711 24 1 1.8985 1.5801 7.6585 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 3.0230 -1.5174 -3.4282 29 1 3.2092 -0.1840 -5.4883 30 1 1.2185 1.8086 -1.4425 31 1 1.1487 0.5386 2.5435 32 1 1.8310 -1.9681 3.6507 33 1 3.2846 -0.9410 3.6509 34 1 3.0156 -2.1020 7.1352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344220102.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:29 Heat of formation + Delta-G solvation = -87.871164 kcal Electronic energy + Delta-G solvation = -20956.402861 eV Core-core repulsion = 17326.449793 eV Total energy + Delta-G solvation = -3629.953068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.82314 -40.44575 -38.89279 -37.58481 -37.21670 -36.21722 -34.56037 -33.14269 -31.98161 -30.65193 -29.23884 -26.04111 -24.81340 -24.03404 -23.24968 -21.40386 -19.71291 -19.27590 -17.98736 -17.69337 -17.08825 -17.00284 -16.82497 -16.15029 -16.08674 -15.86041 -15.10283 -14.88947 -14.81684 -14.40289 -14.07098 -13.97008 -13.68759 -13.33542 -13.25829 -12.95540 -12.92134 -12.75486 -12.66033 -12.38538 -12.23126 -12.11638 -11.86371 -11.68576 -11.52135 -10.80558 -10.80160 -10.11050 -9.92928 -9.31324 -8.28973 -6.45783 -0.13910 -0.02959 0.76353 1.12821 1.44134 1.48202 1.52728 1.56259 1.61459 2.32631 2.36590 2.65447 3.06372 3.49115 3.51695 3.73455 3.79304 3.85310 3.96367 4.22094 4.39191 4.54415 4.62042 4.72056 4.90297 4.99425 5.08595 5.10964 5.21795 5.30577 5.41996 5.62313 5.82371 6.10588 6.63166 6.78377 7.21142 7.36686 8.82933 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002515 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.172318 B =11131.087195 C =11864.810355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.127 0.873 4 O -0.300 6.300 5 C 0.138 3.862 6 C -0.138 4.138 7 C -0.048 4.048 8 C -0.079 4.079 9 Cl -0.049 7.049 10 C 0.003 3.997 11 Cl -0.043 7.043 12 C -0.196 4.196 13 C 0.499 3.501 14 O -0.587 6.587 15 N -0.695 5.695 16 C 0.267 3.733 17 C -0.555 4.555 18 H 0.088 0.912 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.984 3.016 22 H -0.261 1.261 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.164 0.836 31 H 0.412 0.588 32 H -0.009 1.009 33 H -0.010 1.010 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 11.117 -23.064 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.144 0.856 4 O -0.212 6.212 5 C 0.092 3.908 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.107 4.107 9 Cl -0.020 7.020 10 C -0.025 4.025 11 Cl -0.014 7.014 12 C -0.215 4.215 13 C 0.285 3.715 14 O -0.467 6.467 15 N -0.346 5.346 16 C 0.144 3.856 17 C -0.593 4.593 18 H 0.106 0.894 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.807 3.193 22 H -0.185 1.185 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.174 0.826 29 H 0.193 0.807 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.009 0.991 33 H 0.008 0.992 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.809 10.333 -23.090 25.750 hybrid contribution -0.190 0.528 1.010 1.155 sum -4.999 10.861 -22.080 25.110 Atomic orbital electron populations 1.22378 0.89983 1.04531 1.05939 1.22370 0.97476 0.97083 0.81670 0.85561 1.86253 1.80962 1.37754 1.16278 1.19223 0.94607 0.89987 0.87023 1.20776 1.02174 1.02596 0.90166 1.21093 0.96323 0.90377 0.98898 1.20794 1.07050 0.94421 0.88444 1.98382 1.96836 1.72474 1.34354 1.20548 1.00273 0.87778 0.93855 1.98401 1.87154 1.17198 1.98646 1.21257 1.07243 0.93677 0.99313 1.20827 0.80461 0.84734 0.85476 1.90684 1.40093 1.28578 1.87353 1.46041 1.52015 1.31722 1.04840 1.18606 0.93102 0.91849 0.82025 1.21572 1.33450 1.13814 0.90479 0.89409 1.26050 0.94732 0.95600 1.03161 1.70125 1.37136 1.24336 1.25347 0.85221 0.79047 0.78480 0.76571 1.18549 1.21360 1.18615 0.91792 0.87934 0.88395 0.82600 0.80661 0.81866 0.75119 0.99121 0.99230 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.06 71.98 0.65 -2.66 16 2 C 0.07 1.91 2.64 29.85 0.08 1.99 16 3 H 0.13 2.53 6.32 -2.39 -0.02 2.52 16 4 O -0.30 -8.60 9.33 -73.59 -0.69 -9.28 16 5 C 0.14 3.07 6.60 22.50 0.15 3.22 16 6 C -0.14 -2.59 9.99 22.37 0.22 -2.37 16 7 C -0.05 -0.74 9.82 22.27 0.22 -0.52 16 8 C -0.08 -1.38 6.32 22.35 0.14 -1.24 16 9 Cl -0.05 -0.80 27.95 -2.72 -0.08 -0.88 16 10 C 0.00 0.06 6.32 22.33 0.14 0.20 16 11 Cl -0.04 -0.75 27.95 -2.72 -0.08 -0.83 16 12 C -0.20 -3.68 8.02 22.39 0.18 -3.50 16 13 C 0.50 19.44 7.23 87.66 0.63 20.07 16 14 O -0.59 -29.46 16.50 16.01 0.26 -29.20 16 15 N -0.69 -27.52 5.44 -466.80 -2.54 -30.06 16 16 C 0.27 14.13 5.43 85.63 0.46 14.59 16 17 C -0.56 -28.98 9.28 25.60 0.24 -28.74 16 18 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 19 C 0.00 0.24 5.46 84.66 0.46 0.70 16 20 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 21 Si 0.98 41.04 29.54 68.60 2.03 43.07 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.63 7.56 -2.39 -0.02 1.61 16 27 H 0.10 1.41 6.90 -2.38 -0.02 1.40 16 28 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.16 2.51 5.42 -2.91 -0.02 2.49 16 31 H 0.41 12.75 7.74 -92.71 -0.72 12.03 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.32 327.89 3.22 -68.10 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.44 Total: 12.20 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 3.58 Total: 1.74 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.25 Total: -84.92 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.42 Total: -38.48 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.15 Total: -1.71 kcal Total: -71.32 3.22 -68.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344220102.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.772 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds