Wall clock time and date at job start Tue Mar 31 2020 12:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39862 * 120.06837 * 314.97467 * 3 2 1 5 5 C 1.37586 * 119.92550 * 179.72340 * 4 3 2 6 6 C 1.39273 * 120.07123 * 0.52637 * 5 4 3 7 7 S 1.76201 * 119.93057 * 179.72105 * 6 5 4 8 8 C 1.81404 * 103.00133 * 359.72861 * 7 6 5 9 9 C 1.52997 * 109.47257 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47153 * 304.99667 * 9 8 7 11 11 O 1.42898 * 109.47319 * 64.99975 * 9 8 7 12 12 C 1.50699 * 109.47078 * 184.99874 * 9 8 7 13 13 H 1.07999 * 120.00019 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00129 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99723 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99900 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47147 * 90.00197 * 16 14 12 18 18 H 1.48499 * 109.46797 * 209.99607 * 16 14 12 19 19 H 1.48500 * 109.47032 * 329.99738 * 16 14 12 20 20 C 1.39238 * 120.13948 * 359.44869 * 6 5 4 21 21 C 1.37617 * 120.07013 * 0.29715 * 20 6 5 22 22 C 1.50700 * 120.03645 * 180.02562 * 21 20 6 23 23 F 1.39903 * 109.47244 * 359.97438 * 22 21 20 24 24 F 1.39903 * 109.47524 * 119.99675 * 22 21 20 25 25 F 1.39899 * 109.47171 * 240.00025 * 22 21 20 26 26 H 1.08000 * 120.03529 * 359.97254 * 4 3 2 27 27 H 1.08005 * 119.96497 * 180.26712 * 5 4 3 28 28 H 1.09001 * 109.46988 * 59.99392 * 8 7 6 29 29 H 1.09004 * 109.46649 * 300.00083 * 8 7 6 30 30 H 0.96698 * 113.99898 * 59.99520 * 11 9 8 31 31 H 0.97003 * 119.99231 * 179.97438 * 15 14 12 32 32 H 1.08008 * 119.96298 * 180.27282 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -0.8546 0.8563 5 6 4.6450 -0.8556 0.8498 6 6 5.3396 0.0015 -0.0004 7 16 7.1016 0.0023 -0.0003 8 6 7.5102 -1.2462 1.2505 9 6 9.0305 -1.3669 1.3730 10 1 9.4585 -1.5774 0.3929 11 8 9.5669 -0.1407 1.8736 12 6 9.3707 -2.4880 2.3209 13 1 8.5815 -3.0572 2.7895 14 6 10.6895 -2.7863 2.5908 15 7 11.6505 -2.0928 2.0206 16 14 11.1110 -4.1755 3.7664 17 1 11.2380 -5.4453 3.0069 18 1 12.3963 -3.8752 4.4468 19 1 10.0340 -4.3104 4.7798 20 6 4.6445 0.8537 -0.8543 21 6 3.2683 0.8558 -0.8564 22 6 2.5167 1.7781 -1.7814 23 9 3.4274 2.5283 -2.5331 24 9 1.7125 1.0224 -2.6413 25 9 1.7126 2.6402 -1.0282 26 1 2.7312 -1.5162 1.5189 27 1 5.1871 -1.5188 1.5076 28 1 7.0917 -2.2080 0.9541 29 1 7.0911 -0.9483 2.2117 30 1 9.2294 0.1098 2.7445 31 1 12.5783 -2.3026 2.2109 32 1 5.1859 1.5141 -1.5156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352160890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:25 Heat of formation + Delta-G solvation = -148.078459 kcal Electronic energy + Delta-G solvation = -22837.974848 eV Core-core repulsion = 18668.030811 eV Total energy + Delta-G solvation = -4169.944037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.44728 -47.95631 -47.90090 -39.82695 -36.71049 -36.14096 -32.72118 -32.34878 -31.80219 -30.00930 -26.66076 -25.62730 -24.40220 -22.58336 -21.24579 -19.72305 -18.76849 -18.72300 -18.49765 -17.39992 -16.43491 -15.90122 -15.07104 -14.94569 -14.82476 -14.79547 -14.57042 -14.46510 -14.37616 -14.31840 -14.18937 -14.04158 -14.00677 -13.57808 -13.17643 -12.98807 -12.93491 -12.80478 -12.10821 -11.79747 -11.63605 -11.39472 -11.05607 -10.94871 -10.32676 -10.06118 -10.01595 -9.70689 -9.38799 -8.78288 -8.50733 -7.38455 -6.22569 -4.44178 0.09748 0.68517 1.52343 2.28479 2.32888 2.48836 2.62693 3.15397 3.23835 3.24638 3.26800 3.30358 3.50483 3.69618 4.09932 4.21995 4.39282 4.72059 4.85985 4.94967 5.04573 5.31633 5.43642 5.46858 5.63205 5.70367 5.75650 5.99736 6.13400 6.35720 7.12493 7.34531 7.58639 7.84360 8.56773 9.10960 9.33188 10.81299 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.002843 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.655128 B = 9845.978316 C =10597.571391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.243 3.757 3 C -0.009 4.009 4 C -0.042 4.042 5 C -0.114 4.114 6 C -0.057 4.057 7 S -0.068 6.068 8 C -0.131 4.131 9 C 0.246 3.754 10 H 0.068 0.932 11 O -0.557 6.557 12 C -0.575 4.575 13 H 0.060 0.940 14 C 0.082 3.918 15 N -0.853 5.853 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.064 4.064 21 C -0.120 4.120 22 C 0.506 3.494 23 F -0.170 7.170 24 F -0.173 7.173 25 F -0.173 7.173 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.348 0.652 31 H 0.264 0.736 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.466 4.762 -4.298 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.072 4.072 3 C -0.017 4.017 4 C -0.064 4.064 5 C -0.140 4.140 6 C -0.172 4.172 7 S 0.185 5.815 8 C -0.279 4.279 9 C 0.187 3.813 10 H 0.086 0.914 11 O -0.360 6.360 12 C -0.615 4.615 13 H 0.078 0.922 14 C -0.126 4.126 15 N -0.488 5.488 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.089 4.089 21 C -0.126 4.126 22 C 0.452 3.548 23 F -0.151 7.151 24 F -0.154 7.154 25 F -0.154 7.154 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.193 0.807 31 H 0.074 0.926 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.745 5.456 -5.581 16.684 hybrid contribution -0.663 -1.449 1.743 2.362 sum -15.408 4.008 -3.838 16.377 Atomic orbital electron populations 1.81239 1.11647 1.07142 1.07130 1.25519 0.92522 0.94588 0.94593 1.15501 0.84392 1.00912 1.00868 1.21066 0.93774 0.95785 0.95787 1.21476 0.94055 0.99146 0.99283 1.22594 1.00847 0.96849 0.96909 1.86230 0.92775 1.51675 1.50859 1.25161 1.07117 0.97923 0.97700 1.19198 0.81407 0.84059 0.96684 0.91396 1.86622 1.71223 1.41815 1.36299 1.21455 0.92539 1.18021 1.29456 0.92195 1.25034 0.96315 0.95761 0.95453 1.70069 0.99817 1.37976 1.40915 0.86567 0.78107 0.82120 0.80992 1.20349 1.20940 1.19698 1.20531 0.91046 0.98643 0.98631 1.19780 0.94499 0.99166 0.99133 1.18229 0.77605 0.79491 0.79519 1.93201 1.66563 1.77698 1.77636 1.93246 1.74613 1.75817 1.71715 1.93245 1.74622 1.71572 1.75953 0.83617 0.83445 0.89161 0.89817 0.80745 0.92574 0.82943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.39 18.54 41.84 0.78 -4.61 16 2 C 0.24 2.87 13.18 -22.47 -0.30 2.58 16 3 C -0.01 -0.09 5.72 -106.77 -0.61 -0.70 16 4 C -0.04 -0.37 9.75 -39.21 -0.38 -0.75 16 5 C -0.11 -1.16 9.34 -39.43 -0.37 -1.52 16 6 C -0.06 -0.66 6.13 -38.83 -0.24 -0.90 16 7 S -0.07 -1.00 21.70 -107.50 -2.33 -3.33 16 8 C -0.13 -2.12 3.93 37.16 0.15 -1.97 16 9 C 0.25 5.39 2.82 -27.88 -0.08 5.32 16 10 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 11 O -0.56 -12.68 12.48 -35.23 -0.44 -13.12 16 12 C -0.58 -13.93 8.76 -34.44 -0.30 -14.23 16 13 H 0.06 1.38 7.74 -52.49 -0.41 0.98 16 14 C 0.08 2.10 5.40 -17.82 -0.10 2.00 16 15 N -0.85 -23.33 12.84 55.43 0.71 -22.62 16 16 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 C -0.06 -0.69 9.16 -39.44 -0.36 -1.05 16 21 C -0.12 -1.28 5.40 -104.26 -0.56 -1.85 16 22 C 0.51 5.63 2.89 36.01 0.10 5.73 16 23 F -0.17 -1.82 15.97 2.25 0.04 -1.78 16 24 F -0.17 -2.05 16.52 2.25 0.04 -2.01 16 25 F -0.17 -2.05 16.52 2.25 0.04 -2.01 16 26 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 27 H 0.15 1.40 5.86 -52.48 -0.31 1.09 16 28 H 0.09 1.36 7.73 -51.92 -0.40 0.96 16 29 H 0.08 1.24 7.75 -51.92 -0.40 0.84 16 30 H 0.35 6.89 9.04 45.56 0.41 7.30 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.15 1.50 7.14 -52.48 -0.37 1.13 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -27.91 317.68 -5.92 -33.82 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -1.46 Total: 3.83 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.05 Total: -7.35 kcal Atomic # 7 Polarization: -28.71 SS G_CDS: 1.49 Total: -27.23 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.44 Total: -13.12 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.33 Total: -3.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.91 -5.92 -33.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352160890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.254 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds