Wall clock time and date at job start Tue Mar 31 2020 12:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39862 * 120.06837 * 314.97467 * 3 2 1 5 5 C 1.37586 * 119.92550 * 179.72340 * 4 3 2 6 6 C 1.39273 * 120.07123 * 0.52637 * 5 4 3 7 7 S 1.76201 * 119.93057 * 179.72105 * 6 5 4 8 8 C 1.81404 * 103.00133 * 359.72861 * 7 6 5 9 9 C 1.52997 * 109.47257 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47153 * 304.99667 * 9 8 7 11 11 O 1.42898 * 109.47319 * 64.99975 * 9 8 7 12 12 C 1.50699 * 109.47078 * 184.99874 * 9 8 7 13 13 H 1.07999 * 120.00019 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00129 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99723 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99900 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47147 * 90.00197 * 16 14 12 18 18 H 1.48499 * 109.46797 * 209.99607 * 16 14 12 19 19 H 1.48500 * 109.47032 * 329.99738 * 16 14 12 20 20 C 1.39238 * 120.13948 * 359.44869 * 6 5 4 21 21 C 1.37617 * 120.07013 * 0.29715 * 20 6 5 22 22 C 1.50700 * 120.03645 * 180.02562 * 21 20 6 23 23 F 1.39903 * 109.47244 * 359.97438 * 22 21 20 24 24 F 1.39903 * 109.47524 * 119.99675 * 22 21 20 25 25 F 1.39899 * 109.47171 * 240.00025 * 22 21 20 26 26 H 1.08000 * 120.03529 * 359.97254 * 4 3 2 27 27 H 1.08005 * 119.96497 * 180.26712 * 5 4 3 28 28 H 1.09001 * 109.46988 * 59.99392 * 8 7 6 29 29 H 1.09004 * 109.46649 * 300.00083 * 8 7 6 30 30 H 0.96698 * 113.99898 * 59.99520 * 11 9 8 31 31 H 0.97003 * 119.99231 * 179.97438 * 15 14 12 32 32 H 1.08008 * 119.96298 * 180.27282 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2692 -0.8546 0.8563 5 6 4.6450 -0.8556 0.8498 6 6 5.3396 0.0015 -0.0004 7 16 7.1016 0.0023 -0.0003 8 6 7.5102 -1.2462 1.2505 9 6 9.0305 -1.3669 1.3730 10 1 9.4585 -1.5774 0.3929 11 8 9.5669 -0.1407 1.8736 12 6 9.3707 -2.4880 2.3209 13 1 8.5815 -3.0572 2.7895 14 6 10.6895 -2.7863 2.5908 15 7 11.6505 -2.0928 2.0206 16 14 11.1110 -4.1755 3.7664 17 1 11.2380 -5.4453 3.0069 18 1 12.3963 -3.8752 4.4468 19 1 10.0340 -4.3104 4.7798 20 6 4.6445 0.8537 -0.8543 21 6 3.2683 0.8558 -0.8564 22 6 2.5167 1.7781 -1.7814 23 9 3.4274 2.5283 -2.5331 24 9 1.7125 1.0224 -2.6413 25 9 1.7126 2.6402 -1.0282 26 1 2.7312 -1.5162 1.5189 27 1 5.1871 -1.5188 1.5076 28 1 7.0917 -2.2080 0.9541 29 1 7.0911 -0.9483 2.2117 30 1 9.2294 0.1098 2.7445 31 1 12.5783 -2.3026 2.2109 32 1 5.1859 1.5141 -1.5156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352160890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:24 Heat of formation + Delta-G solvation = -163.973561 kcal Electronic energy + Delta-G solvation = -22838.664112 eV Core-core repulsion = 18668.030811 eV Total energy + Delta-G solvation = -4170.633300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.34893 -48.84558 -48.82353 -40.68844 -37.86685 -37.68342 -34.24777 -33.60341 -32.66257 -31.55372 -27.72498 -27.16988 -25.37761 -23.52078 -22.79208 -20.61144 -19.67529 -19.60960 -19.46477 -19.17356 -17.50214 -16.80336 -16.66305 -16.24585 -16.00257 -15.93373 -15.83004 -15.67986 -15.32917 -15.27277 -15.14987 -14.94922 -14.92085 -14.77420 -14.20904 -14.11130 -13.99453 -13.82255 -13.35964 -13.26887 -13.07217 -12.75768 -12.59220 -12.44101 -11.99503 -11.39652 -10.98846 -10.95535 -10.67392 -10.50198 -10.26203 -8.48334 -8.13376 -6.39788 -0.77729 -0.12138 0.42735 1.36837 1.42570 1.45680 1.46187 1.50296 1.56897 1.59875 2.39783 2.41561 2.42285 2.61259 2.81795 3.14598 3.20368 3.61543 3.90033 4.02216 4.10472 4.14644 4.20847 4.37190 4.57927 4.61152 4.87277 4.91437 4.98722 5.33816 5.56787 5.69348 6.00304 6.20222 6.71013 7.34381 7.53861 8.90944 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.002843 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.655128 B = 9845.978316 C =10597.571391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.260 3.740 3 C -0.008 4.008 4 C -0.024 4.024 5 C -0.108 4.108 6 C -0.060 4.060 7 S -0.098 6.098 8 C -0.115 4.115 9 C 0.243 3.757 10 H 0.029 0.971 11 O -0.575 6.575 12 C -0.579 4.579 13 H 0.073 0.927 14 C 0.028 3.972 15 N -0.899 5.899 16 Si 0.960 3.040 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.259 1.259 20 C -0.060 4.060 21 C -0.121 4.121 22 C 0.506 3.494 23 F -0.168 7.168 24 F -0.177 7.177 25 F -0.177 7.177 26 H 0.179 0.821 27 H 0.160 0.840 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.360 0.640 31 H 0.261 0.739 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 3.934 -3.278 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.055 4.055 3 C -0.015 4.015 4 C -0.046 4.046 5 C -0.133 4.133 6 C -0.175 4.175 7 S 0.153 5.847 8 C -0.263 4.263 9 C 0.184 3.816 10 H 0.047 0.953 11 O -0.379 6.379 12 C -0.619 4.619 13 H 0.091 0.909 14 C -0.176 4.176 15 N -0.536 5.536 16 Si 0.785 3.215 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.183 1.183 20 C -0.085 4.085 21 C -0.127 4.127 22 C 0.452 3.548 23 F -0.149 7.149 24 F -0.159 7.159 25 F -0.159 7.159 26 H 0.196 0.804 27 H 0.177 0.823 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.206 0.794 31 H 0.070 0.930 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.428 4.620 -4.552 17.662 hybrid contribution -0.261 -1.127 1.365 1.789 sum -16.689 3.493 -3.187 17.346 Atomic orbital electron populations 1.81264 1.12646 1.08235 1.08223 1.25632 0.92599 0.93632 0.93636 1.15617 0.83700 1.01128 1.01090 1.21345 0.93195 0.95044 0.95057 1.21648 0.94525 0.98474 0.98608 1.22409 0.98619 0.98195 0.98252 1.86295 0.95939 1.51570 1.50876 1.24692 1.02965 0.99320 0.99353 1.18951 0.84971 0.83304 0.94348 0.95305 1.86565 1.72174 1.41999 1.37203 1.21944 0.92726 1.18228 1.28988 0.90920 1.25883 0.96571 0.98015 0.97094 1.70215 1.00000 1.40242 1.43095 0.85553 0.77731 0.79134 0.79120 1.20145 1.21573 1.18281 1.20537 0.91015 0.98462 0.98441 1.19713 0.94315 0.99336 0.99300 1.18285 0.77529 0.79490 0.79519 1.93206 1.66409 1.77675 1.77614 1.93238 1.74814 1.75926 1.71905 1.93237 1.74821 1.71760 1.76058 0.80383 0.82279 0.87921 0.87966 0.79444 0.92958 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.94 18.54 19.01 0.35 -10.59 16 2 C 0.26 5.56 13.18 88.33 1.16 6.72 16 3 C -0.01 -0.14 5.72 -21.26 -0.12 -0.26 16 4 C -0.02 -0.33 9.75 22.51 0.22 -0.11 16 5 C -0.11 -1.80 9.34 22.36 0.21 -1.59 16 6 C -0.06 -1.26 6.13 22.76 0.14 -1.12 16 7 S -0.10 -2.76 21.70 -56.49 -1.23 -3.99 16 8 C -0.12 -3.55 3.93 71.98 0.28 -3.27 16 9 C 0.24 10.69 2.82 29.85 0.08 10.78 16 10 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 11 O -0.58 -26.42 12.48 -148.98 -1.86 -28.28 16 12 C -0.58 -27.67 8.76 25.60 0.22 -27.44 16 13 H 0.07 3.21 7.74 -2.91 -0.02 3.18 16 14 C 0.03 1.40 5.40 84.65 0.46 1.86 16 15 N -0.90 -50.17 12.84 21.45 0.28 -49.90 16 16 Si 0.96 39.52 29.54 68.60 2.03 41.54 16 17 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 C -0.06 -1.19 9.16 22.36 0.20 -0.98 16 21 C -0.12 -2.33 5.40 -19.63 -0.11 -2.44 16 22 C 0.51 10.52 2.89 71.24 0.21 10.73 16 23 F -0.17 -3.39 15.97 44.97 0.72 -2.67 16 24 F -0.18 -3.98 16.52 44.97 0.74 -3.24 16 25 F -0.18 -3.98 16.52 44.97 0.74 -3.23 16 26 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 27 H 0.16 2.36 5.86 -2.91 -0.02 2.34 16 28 H 0.10 2.87 7.73 -2.39 -0.02 2.85 16 29 H 0.10 2.75 7.75 -2.39 -0.02 2.73 16 30 H 0.36 14.17 9.04 -74.06 -0.67 13.50 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.16 2.89 7.14 -2.91 -0.02 2.87 16 Total: -1.00 -60.42 317.68 5.28 -55.15 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.54 Total: 12.34 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 2.96 Total: -7.13 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.63 Total: -60.49 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.86 Total: -28.28 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 2.20 Total: -9.14 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -1.23 Total: -3.99 kcal Total: -60.42 5.28 -55.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352160890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.827 kcal (2) G-P(sol) polarization free energy of solvation -60.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds